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Conserved domains on  [gi|303299479|gb|ADM09078|]
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methionyl-tRNA formyltransferase [Parvularcula bermudensis HTCC2503]

Protein Classification

methionyl-tRNA formyltransferase( domain architecture ID 11415469)

methionyl-tRNA formyltransferase catalyzes formylation of the initiator methionyl-tRNA

EC:  2.1.2.9
Gene Ontology:  GO:0004479|GO:0071951
PubMed:  8199241

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Fmt COG0223
Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis];
1-318 9.99e-150

Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis];


:

Pssm-ID: 439993 [Multi-domain]  Cd Length: 308  Bit Score: 422.59  E-value: 9.99e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479   1 MRIVFMGTPAFAVPALASLLAAGHEVIAVYSQPPRKSGRGHRVQKTPVHQFAEPHGIEVRTPDRLKGPTETQRFVDLNAD 80
Cdd:COG0223    1 MRIVFMGTPDFAVPSLEALLAAGHEVVAVVTQPDRPAGRGRKLTPSPVKELALEHGIPVLQPESLKDPEFLEELRALNPD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  81 LGIVVAYGLILPTAFLEAPRHGCLNLHASLLPRWRGAAPVQRAIMAGDAMTGVQVMQMEKGLDTGPILLSETVPIGADQT 160
Cdd:COG0223   81 LIVVVAYGQILPKEVLDIPRLGCINLHASLLPRYRGAAPIQWAILNGDTETGVTIMQMDEGLDTGDILLQEEVPIGPDDT 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479 161 AGQLTDILAQTGAELLPRALAALDRGGLQATPQSKSGVTYAEKISAAEAAVDWSGSARVLDRHIRGLSPFPGAWVMVhrG 240
Cdd:COG0223  161 AGSLHDKLAELGAELLLETLDALEAGTLTPTPQDESGATYAPKISKEDGRIDWSRPAEEIHRLIRALNPWPGAFTTL--D 238
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 303299479 241 GEpiRLKLLDSRLVEgegadgGAVGAAPGTILPAPEDRVRVATGQGALDLLLLQRPGKAPQDAAAFRRGFALAPGDRL 318
Cdd:COG0223  239 GK--RLKIWKARVLE------EAGGGAPGTILAVDKDGLLVACGDGALRLLELQPAGKKRMSAADFLRGYRLKPGERL 308
 
Name Accession Description Interval E-value
Fmt COG0223
Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis];
1-318 9.99e-150

Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis];


Pssm-ID: 439993 [Multi-domain]  Cd Length: 308  Bit Score: 422.59  E-value: 9.99e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479   1 MRIVFMGTPAFAVPALASLLAAGHEVIAVYSQPPRKSGRGHRVQKTPVHQFAEPHGIEVRTPDRLKGPTETQRFVDLNAD 80
Cdd:COG0223    1 MRIVFMGTPDFAVPSLEALLAAGHEVVAVVTQPDRPAGRGRKLTPSPVKELALEHGIPVLQPESLKDPEFLEELRALNPD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  81 LGIVVAYGLILPTAFLEAPRHGCLNLHASLLPRWRGAAPVQRAIMAGDAMTGVQVMQMEKGLDTGPILLSETVPIGADQT 160
Cdd:COG0223   81 LIVVVAYGQILPKEVLDIPRLGCINLHASLLPRYRGAAPIQWAILNGDTETGVTIMQMDEGLDTGDILLQEEVPIGPDDT 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479 161 AGQLTDILAQTGAELLPRALAALDRGGLQATPQSKSGVTYAEKISAAEAAVDWSGSARVLDRHIRGLSPFPGAWVMVhrG 240
Cdd:COG0223  161 AGSLHDKLAELGAELLLETLDALEAGTLTPTPQDESGATYAPKISKEDGRIDWSRPAEEIHRLIRALNPWPGAFTTL--D 238
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 303299479 241 GEpiRLKLLDSRLVEgegadgGAVGAAPGTILPAPEDRVRVATGQGALDLLLLQRPGKAPQDAAAFRRGFALAPGDRL 318
Cdd:COG0223  239 GK--RLKIWKARVLE------EAGGGAPGTILAVDKDGLLVACGDGALRLLELQPAGKKRMSAADFLRGYRLKPGERL 308
FMT_core_Met-tRNA-FMT_N cd08646
Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Methionyl-tRNA ...
1-204 1.08e-107

Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Methionyl-tRNA formyltransferase (Met-tRNA-FMT), N-terminal formyltransferase domain. Met-tRNA-FMT transfers a formyl group from N-10 formyltetrahydrofolate to the amino terminal end of a methionyl-aminoacyl-tRNA acyl moiety, yielding formyl-Met-tRNA. Formyl-Met-tRNA plays essential role in protein translation initiation by forming complex with IF2. The formyl group plays a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. The N-terminal domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187715 [Multi-domain]  Cd Length: 204  Bit Score: 312.07  E-value: 1.08e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479   1 MRIVFMGTPAFAVPALASLLAAGHEVIAVYSQPPRKSGRGHRVQKTPVHQFAEPHGIEVRTPDRLKGPTETQRFVDLNAD 80
Cdd:cd08646    1 MRIVFMGTPDFAVPSLEALLKSGHEVVAVVTQPDKPRGRGKKLTPSPVKELALELGLPVLQPEKLKDEEFLEELKALKPD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  81 LGIVVAYGLILPTAFLEAPRHGCLNLHASLLPRWRGAAPVQRAIMAGDAMTGVQVMQMEKGLDTGPILLSETVPIGADQT 160
Cdd:cd08646   81 LIVVVAYGQILPKEILDLPPYGCINVHPSLLPKYRGAAPIQRAILNGDKETGVTIMKMDEGLDTGDILAQEEVPIDPDDT 160
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 303299479 161 AGQLTDILAQTGAELLPRALAALDRGGLQATPQSKSGVTYAEKI 204
Cdd:cd08646  161 AGELLDKLAELGADLLLEVLDDIEAGKLNPVPQDESEATYAPKI 204
fmt TIGR00460
methionyl-tRNA formyltransferase; The top-scoring characterized proteins other than ...
1-311 4.99e-90

methionyl-tRNA formyltransferase; The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met. [Protein synthesis, tRNA aminoacylation]


Pssm-ID: 273088 [Multi-domain]  Cd Length: 313  Bit Score: 271.20  E-value: 4.99e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479    1 MRIVFMGTPAFAVPALASLLAAGHEVIAVYSQPPRKSGRGHRVQKTPVHQFAEPHGIEVRTPDRLKGPTETQRFVDLNAD 80
Cdd:TIGR00460   1 LRIVFFGTPTFSLPVLEELREDNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQLEELPLVRELKPD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479   81 LGIVVAYGLILPTAFLEAPRHGCLNLHASLLPRWRGAAPVQRAIMAGDAMTGVQVMQMEKGLDTGPILLSETVPIGADQT 160
Cdd:TIGR00460  81 VIVVVSFGKILPKEFLDLFPYGCINVHPSLLPRWRGGAPIQRAILNGDKKTGVTIMQMVPKMDAGDILKQETFPIEEEDN 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  161 AGQLTDILAQTGAELLPRALAALDRGGLQATPQSKSGVTYAEKISAAEAAVDWSGSARVLDRHIRGLSPFPGAWVMVhrg 240
Cdd:TIGR00460 161 SGTLSDKLSELGAQLLIETLKELPEGKNKPEPQDAEEATYAPKISKEQERIDWNQSAEELLNKIRALNPWPTAWLTF--- 237
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 303299479  241 gEPIRLKLLDSRLVEgegadGGAVGAAPGTILPAPEDRVRVATGQ-GALDLLLLQRPGKAPQDAAAFRRGFA 311
Cdd:TIGR00460 238 -EGKNIKIHKAKVID-----LSTYKAKPGEIVYHNKKGILVACGKdGILLLLSLQPPGKKVMRAEDFYNGSR 303
PLN02285 PLN02285
methionyl-tRNA formyltransferase
2-318 1.25e-68

methionyl-tRNA formyltransferase


Pssm-ID: 215159 [Multi-domain]  Cd Length: 334  Bit Score: 217.25  E-value: 1.25e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479   2 RIVFMGTPAFAVPALASLLAAGH------EVIAVYSQPPRKSGRGHRVQKTPVHQFAEPHGI---EVRTPDRLKGPTETQ 72
Cdd:PLN02285   8 RLVFLGTPEVAATVLDALLDASQapdsafEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFppdLIFTPEKAGEEDFLS 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  73 RFVDLNADLGIVVAYGLILPTAFLEAPRHGCLNLHASLLPRWRGAAPVQRAIMAGDAMTGVQVMQMEKGLDTGPILLSET 152
Cdd:PLN02285  88 ALRELQPDLCITAAYGNILPQKFLDIPKLGTVNIHPSLLPLYRGAAPVQRALQDGVNETGVSVAFTVRALDAGPVIAQER 167
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479 153 VPIGADQTAGQLTDILAQTGAELLPRALAAL--DRGGLQATPQSKSGVTYAEKISAAEAAVDWSGSARVLDRHIRGLSPF 230
Cdd:PLN02285 168 VEVDEDIKAPELLPLLFELGTKLLLRELPSVldGSAKDKATPQDDSKATHAPKISPEESWLSFDEEARVLHNKVRAFAGW 247
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479 231 PGAWVMVHRG------GEPIRLKLLDSRLVEGEGADGGAVGAAPGTilpapEDRVRVATGQG-ALDLLLLQRPGKAPQDA 303
Cdd:PLN02285 248 PGTRAKFQLVddgdgeREVLELKIITTRVCEAGGEQTGSADAVTFK-----KDSLLVPCGGGtWLEVLEVQPPGKKVMKA 322
                        330
                 ....*....|....*
gi 303299479 304 AAFRRGFalaPGDRL 318
Cdd:PLN02285 323 KDFWNGL---RGQTL 334
Formyl_trans_N pfam00551
Formyl transferase; This family includes the following members. Glycinamide ribonucleotide ...
1-180 7.39e-44

Formyl transferase; This family includes the following members. Glycinamide ribonucleotide transformylase catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.


Pssm-ID: 395436 [Multi-domain]  Cd Length: 181  Bit Score: 148.21  E-value: 7.39e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479    1 MRIVFM--GTPAFAVPALASLLAAGH--EVIAVYSQPPRKSGRGHRVQKTPVHQFAEPHGIEVRTpdrlKGPTETQRFVD 76
Cdd:pfam00551   1 MKIAVLisGTGSNLQALIDALRKGGQdaDVVLVISNKDKAAGLGRAEQAGIPTFVFEHKGLTPRS----LFDQELADALR 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479   77 -LNADLGIVVAYGLILPTAFLEAPRHGCLNLHASLLPRWRGAAPVQRAIMAGDAMTGVQVMQMEKGLDTGPILLSETVPI 155
Cdd:pfam00551  77 aLAADVIVLAGYMRILPPEFLQAPPGGILNIHPSLLPRFRGAAPIQRALEAGDKETGVTIHFVDEGLDTGPILAQKAVPI 156
                         170       180
                  ....*....|....*....|....*
gi 303299479  156 GADQTAGQLTDILAQTGAELLPRAL 180
Cdd:pfam00551 157 LPDDTAETLYNRVADLEHKALPRVL 181
 
Name Accession Description Interval E-value
Fmt COG0223
Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis];
1-318 9.99e-150

Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis];


Pssm-ID: 439993 [Multi-domain]  Cd Length: 308  Bit Score: 422.59  E-value: 9.99e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479   1 MRIVFMGTPAFAVPALASLLAAGHEVIAVYSQPPRKSGRGHRVQKTPVHQFAEPHGIEVRTPDRLKGPTETQRFVDLNAD 80
Cdd:COG0223    1 MRIVFMGTPDFAVPSLEALLAAGHEVVAVVTQPDRPAGRGRKLTPSPVKELALEHGIPVLQPESLKDPEFLEELRALNPD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  81 LGIVVAYGLILPTAFLEAPRHGCLNLHASLLPRWRGAAPVQRAIMAGDAMTGVQVMQMEKGLDTGPILLSETVPIGADQT 160
Cdd:COG0223   81 LIVVVAYGQILPKEVLDIPRLGCINLHASLLPRYRGAAPIQWAILNGDTETGVTIMQMDEGLDTGDILLQEEVPIGPDDT 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479 161 AGQLTDILAQTGAELLPRALAALDRGGLQATPQSKSGVTYAEKISAAEAAVDWSGSARVLDRHIRGLSPFPGAWVMVhrG 240
Cdd:COG0223  161 AGSLHDKLAELGAELLLETLDALEAGTLTPTPQDESGATYAPKISKEDGRIDWSRPAEEIHRLIRALNPWPGAFTTL--D 238
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 303299479 241 GEpiRLKLLDSRLVEgegadgGAVGAAPGTILPAPEDRVRVATGQGALDLLLLQRPGKAPQDAAAFRRGFALAPGDRL 318
Cdd:COG0223  239 GK--RLKIWKARVLE------EAGGGAPGTILAVDKDGLLVACGDGALRLLELQPAGKKRMSAADFLRGYRLKPGERL 308
FMT_core_Met-tRNA-FMT_N cd08646
Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Methionyl-tRNA ...
1-204 1.08e-107

Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Methionyl-tRNA formyltransferase (Met-tRNA-FMT), N-terminal formyltransferase domain. Met-tRNA-FMT transfers a formyl group from N-10 formyltetrahydrofolate to the amino terminal end of a methionyl-aminoacyl-tRNA acyl moiety, yielding formyl-Met-tRNA. Formyl-Met-tRNA plays essential role in protein translation initiation by forming complex with IF2. The formyl group plays a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. The N-terminal domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187715 [Multi-domain]  Cd Length: 204  Bit Score: 312.07  E-value: 1.08e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479   1 MRIVFMGTPAFAVPALASLLAAGHEVIAVYSQPPRKSGRGHRVQKTPVHQFAEPHGIEVRTPDRLKGPTETQRFVDLNAD 80
Cdd:cd08646    1 MRIVFMGTPDFAVPSLEALLKSGHEVVAVVTQPDKPRGRGKKLTPSPVKELALELGLPVLQPEKLKDEEFLEELKALKPD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  81 LGIVVAYGLILPTAFLEAPRHGCLNLHASLLPRWRGAAPVQRAIMAGDAMTGVQVMQMEKGLDTGPILLSETVPIGADQT 160
Cdd:cd08646   81 LIVVVAYGQILPKEILDLPPYGCINVHPSLLPKYRGAAPIQRAILNGDKETGVTIMKMDEGLDTGDILAQEEVPIDPDDT 160
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 303299479 161 AGQLTDILAQTGAELLPRALAALDRGGLQATPQSKSGVTYAEKI 204
Cdd:cd08646  161 AGELLDKLAELGADLLLEVLDDIEAGKLNPVPQDESEATYAPKI 204
fmt TIGR00460
methionyl-tRNA formyltransferase; The top-scoring characterized proteins other than ...
1-311 4.99e-90

methionyl-tRNA formyltransferase; The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met. [Protein synthesis, tRNA aminoacylation]


Pssm-ID: 273088 [Multi-domain]  Cd Length: 313  Bit Score: 271.20  E-value: 4.99e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479    1 MRIVFMGTPAFAVPALASLLAAGHEVIAVYSQPPRKSGRGHRVQKTPVHQFAEPHGIEVRTPDRLKGPTETQRFVDLNAD 80
Cdd:TIGR00460   1 LRIVFFGTPTFSLPVLEELREDNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQLEELPLVRELKPD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479   81 LGIVVAYGLILPTAFLEAPRHGCLNLHASLLPRWRGAAPVQRAIMAGDAMTGVQVMQMEKGLDTGPILLSETVPIGADQT 160
Cdd:TIGR00460  81 VIVVVSFGKILPKEFLDLFPYGCINVHPSLLPRWRGGAPIQRAILNGDKKTGVTIMQMVPKMDAGDILKQETFPIEEEDN 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  161 AGQLTDILAQTGAELLPRALAALDRGGLQATPQSKSGVTYAEKISAAEAAVDWSGSARVLDRHIRGLSPFPGAWVMVhrg 240
Cdd:TIGR00460 161 SGTLSDKLSELGAQLLIETLKELPEGKNKPEPQDAEEATYAPKISKEQERIDWNQSAEELLNKIRALNPWPTAWLTF--- 237
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 303299479  241 gEPIRLKLLDSRLVEgegadGGAVGAAPGTILPAPEDRVRVATGQ-GALDLLLLQRPGKAPQDAAAFRRGFA 311
Cdd:TIGR00460 238 -EGKNIKIHKAKVID-----LSTYKAKPGEIVYHNKKGILVACGKdGILLLLSLQPPGKKVMRAEDFYNGSR 303
PLN02285 PLN02285
methionyl-tRNA formyltransferase
2-318 1.25e-68

methionyl-tRNA formyltransferase


Pssm-ID: 215159 [Multi-domain]  Cd Length: 334  Bit Score: 217.25  E-value: 1.25e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479   2 RIVFMGTPAFAVPALASLLAAGH------EVIAVYSQPPRKSGRGHRVQKTPVHQFAEPHGI---EVRTPDRLKGPTETQ 72
Cdd:PLN02285   8 RLVFLGTPEVAATVLDALLDASQapdsafEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFppdLIFTPEKAGEEDFLS 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  73 RFVDLNADLGIVVAYGLILPTAFLEAPRHGCLNLHASLLPRWRGAAPVQRAIMAGDAMTGVQVMQMEKGLDTGPILLSET 152
Cdd:PLN02285  88 ALRELQPDLCITAAYGNILPQKFLDIPKLGTVNIHPSLLPLYRGAAPVQRALQDGVNETGVSVAFTVRALDAGPVIAQER 167
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479 153 VPIGADQTAGQLTDILAQTGAELLPRALAAL--DRGGLQATPQSKSGVTYAEKISAAEAAVDWSGSARVLDRHIRGLSPF 230
Cdd:PLN02285 168 VEVDEDIKAPELLPLLFELGTKLLLRELPSVldGSAKDKATPQDDSKATHAPKISPEESWLSFDEEARVLHNKVRAFAGW 247
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479 231 PGAWVMVHRG------GEPIRLKLLDSRLVEGEGADGGAVGAAPGTilpapEDRVRVATGQG-ALDLLLLQRPGKAPQDA 303
Cdd:PLN02285 248 PGTRAKFQLVddgdgeREVLELKIITTRVCEAGGEQTGSADAVTFK-----KDSLLVPCGGGtWLEVLEVQPPGKKVMKA 322
                        330
                 ....*....|....*
gi 303299479 304 AAFRRGFalaPGDRL 318
Cdd:PLN02285 323 KDFWNGL---RGQTL 334
Formyl_trans_N pfam00551
Formyl transferase; This family includes the following members. Glycinamide ribonucleotide ...
1-180 7.39e-44

Formyl transferase; This family includes the following members. Glycinamide ribonucleotide transformylase catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.


Pssm-ID: 395436 [Multi-domain]  Cd Length: 181  Bit Score: 148.21  E-value: 7.39e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479    1 MRIVFM--GTPAFAVPALASLLAAGH--EVIAVYSQPPRKSGRGHRVQKTPVHQFAEPHGIEVRTpdrlKGPTETQRFVD 76
Cdd:pfam00551   1 MKIAVLisGTGSNLQALIDALRKGGQdaDVVLVISNKDKAAGLGRAEQAGIPTFVFEHKGLTPRS----LFDQELADALR 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479   77 -LNADLGIVVAYGLILPTAFLEAPRHGCLNLHASLLPRWRGAAPVQRAIMAGDAMTGVQVMQMEKGLDTGPILLSETVPI 155
Cdd:pfam00551  77 aLAADVIVLAGYMRILPPEFLQAPPGGILNIHPSLLPRFRGAAPIQRALEAGDKETGVTIHFVDEGLDTGPILAQKAVPI 156
                         170       180
                  ....*....|....*....|....*
gi 303299479  156 GADQTAGQLTDILAQTGAELLPRAL 180
Cdd:pfam00551 157 LPDDTAETLYNRVADLEHKALPRVL 181
FMT_core cd08369
Formyltransferase, catalytic core domain; Formyltransferase, catalytic core domain. The ...
3-182 3.69e-42

Formyltransferase, catalytic core domain; Formyltransferase, catalytic core domain. The proteins of this superfamily contain a formyltransferase domain that hydrolyzes the removal of a formyl group from its substrate as part of a multistep transfer mechanism, and this alignment model represents the catalytic core of the formyltransferase domain. This family includes the following known members; Glycinamide Ribonucleotide Transformylase (GART), Formyl-FH4 Hydrolase, Methionyl-tRNA Formyltransferase, ArnA, and 10-Formyltetrahydrofolate Dehydrogenase (FDH). Glycinamide Ribonucleotide Transformylase (GART) catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyl-FH4 Hydrolase catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Methionyl-tRNA Formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA, which plays important role in translation initiation. ArnA is required for the modification of lipid A with 4-amino-4-deoxy-l-arabinose (Ara4N) that leads to resistance to cationic antimicrobial peptides (CAMPs) and clinical antimicrobials such as polymyxin. 10-formyltetrahydrofolate dehydrogenase (FDH) catalyzes the conversion of 10-formyltetrahydrofolate, a precursor for nucleotide biosynthesis, to tetrahydrofolate. Members of this family are multidomain proteins. The formyltransferase domain is located at the N-terminus of FDH, Methionyl-tRNA Formyltransferase and ArnA, and at the C-terminus of Formyl-FH4 Hydrolase. Prokaryotic Glycinamide Ribonucleotide Transformylase (GART) is a single domain protein while eukaryotic GART is a trifunctional protein that catalyzes the second, third and fifth steps in de novo purine biosynthesis.


Pssm-ID: 187712 [Multi-domain]  Cd Length: 173  Bit Score: 143.58  E-value: 3.69e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479   3 IVFMGTPAFAVPALASLL-AAGHEVIAVYSQPPrksgrghrvqktPVHQFAEPHGIEVRTPDRLKGPTETQRFVD----L 77
Cdd:cd08369    1 IVILGSGNIGQRVLKALLsKEGHEIVGVVTHPD------------SPRGTAQLSLELVGGKVYLDSNINTPELLEllkeF 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  78 NADLGIVVAYGLILPTAFLEAPRHGCLNLHASLLPRWRGAAPVQRAIMAGDAMTGVQVMQMEKGLDTGPILLSETVPIGA 157
Cdd:cd08369   69 APDLIVSINFRQIIPPEILKLPPGGAINIHPSLLPRYRGVNPLAWAIINGEKETGVTVHYMDEGIDTGDIIAQEVIPISP 148
                        170       180
                 ....*....|....*....|....*
gi 303299479 158 DQTAGQLTDILAQTGAELLPRALAA 182
Cdd:cd08369  149 DDTAGTLYQRLIELGPKLLKEALQK 173
FMT_core_ArnA_N cd08644
ArnA, N-terminal formyltransferase domain; ArnA_N: ArnA is a bifunctional enzyme required for ...
1-200 2.01e-35

ArnA, N-terminal formyltransferase domain; ArnA_N: ArnA is a bifunctional enzyme required for the modification of lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) that leads to resistance to cationic antimicrobial peptides (CAMPs) and clinical antimicrobials such as polymyxin. The C-terminal dehydrogenase domain of ArnA catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto-arabinose (UDP-Ara4O), while the N-terminal formyltransferase domain of ArnA catalyzes the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido-arabinose (UDP-L-Ara4FN). This domain family represents the catalytic core of the N-terminal formyltransferase domain. The formyltransferase also contains a smaller C-terminal domain the may be involved in substrate binding. ArnA forms a hexameric structure, in which the dehydrogenase domains are arranged at the center of the particle with the transformylase domains on the outside of the particle.


Pssm-ID: 187713 [Multi-domain]  Cd Length: 203  Bit Score: 127.08  E-value: 2.01e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479   1 MRIVFMGTPAFAVPALASLLAAGHEVIAVYSQpprKSGRGHRVQKTPVHQFAEPHGIEVRTPDRLKGPTETQRFVDLNAD 80
Cdd:cd08644    1 MKAVVFAYHEVGYRCLEALLAAGFEVVAVFTH---TDNPGENIWFGSVAQLAREHGIPVFTPDDINHPEWVERLRALKPD 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  81 LGIVVAYGLILPTAFLEAPRHGCLNLHASLLPRWRGAAPVQRAIMAGDAMTGVQVMQMEKGLDTGPILLSETVPIGADQT 160
Cdd:cd08644   78 LIFSFYYRHMISEDILEIARLGAFNLHGSLLPKYRGRAPLNWALINGETETGVTLHRMTKKPDAGAIVDQEKVPILPDDT 157
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 303299479 161 AGQLTDILAQTGAELLPRALAALDRGGLQATPQSKSGVTY 200
Cdd:cd08644  158 AKSLFHKLCVAARRLLARTLPALKAGKARERPQDETQASY 197
PRK08125 PRK08125
bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ...
16-233 1.77e-31

bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA;


Pssm-ID: 236156 [Multi-domain]  Cd Length: 660  Bit Score: 123.94  E-value: 1.77e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  16 LASLLAAGHEVIAVYSQPPRKSgrghrvQKT---PVHQFAEPHGIEVRTPDRLKGPTETQRFVDLNADLGIVVAYGLILP 92
Cdd:PRK08125  16 IEALLAAGYEIAAVFTHTDNPG------ENHffgSVARLAAELGIPVYAPEDVNHPLWVERIRELAPDVIFSFYYRNLLS 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  93 TAFLEAPRHGCLNLHASLLPRWRGAAPVQRAIMAGDAMTGVQVMQMEKGLDTGPILLSETVPIGADQTAGQLTDILAQTG 172
Cdd:PRK08125  90 DEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQQRVAIAPDDTALTLHHKLCHAA 169
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 303299479 173 AELLPRALAALDRGGLQATPQSKSGVTYAEKISAAEAAVDWSGSARVLDRHIRGLS-PFPGA 233
Cdd:PRK08125 170 RQLLEQTLPAIKHGNIPEIPQDESQATYFGRRTPADGLIDWHKPASTLHNLVRAVTdPWPGA 231
PRK06988 PRK06988
formyltransferase;
1-233 1.13e-28

formyltransferase;


Pssm-ID: 235902 [Multi-domain]  Cd Length: 312  Bit Score: 112.09  E-value: 1.13e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479   1 MRIVFMGTPAFAVPALASLLAAGHEVIAVYSQPPRKSgrgHRVQKTPVHQFAEPHGIEVRTPDRLKGPTETQRFVDLNAD 80
Cdd:PRK06988   3 PRAVVFAYHNVGVRCLQVLLARGVDVALVVTHEDNPT---ENIWFGSVAAVAAEHGIPVITPADPNDPELRAAVAAAAPD 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  81 LGIVVAYGLILPTAFLEAPRHGCLNLHASLLPRWRGAAPVQRAIMAGDAMTGVQVMQMEKGLDTGPILLSETVPIGADQT 160
Cdd:PRK06988  80 FIFSFYYRHMIPVDLLALAPRGAYNMHGSLLPKYRGRVPVNWAVLNGETETGATLHEMVAKPDAGAIVDQTAVPILPDDT 159
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 303299479 161 AGQLTDILAQTGAELLPRALAALDRGGLQATPQSKSGVTYAEKISAAEAAVDWSGSARVLDRHIRGLS-PFPGA 233
Cdd:PRK06988 160 AAQVFDKVTVAAEQTLWRVLPALLAGEAPHLPNDLAQGSYFGGRKPEDGRIDWSKPAAQVYNLIRAVApPYPGA 233
FMT_core_like_4 cd08651
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
2-183 2.78e-27

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187720 [Multi-domain]  Cd Length: 180  Bit Score: 105.04  E-value: 2.78e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479   2 RIVFMGTPAFAVPALASLLAAGHEVIAVYSQPPRKSGRghRVQKTPVHQFAEPHGIEVRTPDRLKGPTETQRFVDLNADL 81
Cdd:cd08651    1 RIVFIGCVEFSLIALEAILEAGGEVVGVITLDDSSSNN--DSDYLDLDSFARKNGIPYYKFTDINDEEIIEWIKEANPDI 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  82 GIVVAYGLILPTAFLEAPRHGCLNLHASLLPRWRGAAPVQRAIMAGDAMTGVQVMQMEKGLDTGPILLSETVPIGADQTA 161
Cdd:cd08651   79 IFVFGWSQLLKPEILAIPRLGVIGFHPTKLPKNRGRAPIPWAILLGLKETASTFFWMDEGADSGDILSQEPFPIDKDDTA 158
                        170       180
                 ....*....|....*....|..
gi 303299479 162 GQLTDILAQTGAELLPRALAAL 183
Cdd:cd08651  159 NSLYDKIMEAAKQQIDKFLPRL 180
Met_tRNA_FMT_C cd08704
C-terminal domain of Formyltransferase and other enzymes; C-terminal domain of formyl ...
207-303 3.08e-22

C-terminal domain of Formyltransferase and other enzymes; C-terminal domain of formyl transferase and other proteins with diverse enzymatic activities. Proteins found in this family include methionyl-tRNA formyltransferase, ArnA, and 10-formyltetrahydrofolate dehydrogenase. Methionyl-tRNA formyltransferases constitute the majority of the family and also demonstrate greater sequence diversity. Although most proteins with formyltransferase activity contain the C-terminal domain, some formyltransferases ( for example, prokaryotic glycinamide ribonucleotide transformylase (GART)) only have the core catalytic domain, indicating that the C-terminal domain is not a requirement for catalytic activity and may be involved in substrate binding. For example, the C-terminal domain of methionyl-tRNA formyltransferase is involved in the tRNA binding.


Pssm-ID: 187732 [Multi-domain]  Cd Length: 87  Bit Score: 88.74  E-value: 3.08e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479 207 AEAAVDWSGSARVLDRHIRGLSPFPGAWVMVhrggEPIRLKLLDSRLVEgegadgGAVGAAPGTILPAPEDRVRVATGQG 286
Cdd:cd08704    1 EEGRIDWSKSAEEIHNLIRALNPWPGAYTTL----NGKRLKILKAEVLE------ESGEAAPGTILAVDKKGLLVACGDG 70
                         90
                 ....*....|....*..
gi 303299479 287 ALDLLLLQRPGKAPQDA 303
Cdd:cd08704   71 ALEILELQPEGKKRMSA 87
Formyl_trans_C pfam02911
Formyl transferase, C-terminal domain;
203-310 3.48e-21

Formyl transferase, C-terminal domain;


Pssm-ID: 460744 [Multi-domain]  Cd Length: 99  Bit Score: 86.17  E-value: 3.48e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  203 KISAAEAAVDWSGSARVLDRHIRGLSPFPGAWvMVHRGGepiRLKLLDSRLVEgegadgGAVGAAPGTILPAPEDRVRVA 282
Cdd:pfam02911   1 KIKKEDGRIDWNQPAEEIHRLIRALDPWPGAY-TFLNGK---RVKLLKASVLD------QESGAAPGTIVTVDKGGLLVA 70
                          90       100
                  ....*....|....*....|....*...
gi 303299479  283 TGQGALDLLLLQRPGKAPQDAAAFRRGF 310
Cdd:pfam02911  71 CGDGALLILELQLEGKKPMSAEDFLNGF 98
FMT_core_FDH_N cd08647
10-formyltetrahydrofolate dehydrogenase (FDH), N-terminal hydrolase domain; This family ...
1-204 1.29e-20

10-formyltetrahydrofolate dehydrogenase (FDH), N-terminal hydrolase domain; This family represents the N-terminal hydrolase domain of the bifunctional protein 10-formyltetrahydrofolate dehydrogenase (FDH). This domain contains a 10-formyl-tetrahydrofolate (10-formyl-THF) binding site and shares sequence homology and structural topology with other enzymes utilizing this substrate. This domain functions as a hydrolase, catalyzing the conversion of 10-formyl-THF, a precursor for nucleotide biosynthesis, to tetrahydrofolate (THF). The overall FDH reaction mechanism is a coupling of two sequential reactions, a hydrolase and a formyl dehydrogenase, bridged by a substrate transfer step. The N-terminal hydrolase domain removes the formyl group from 10-formyl-THF and the C-terminal NADP-dependent dehydrogenase domain then reduces the formyl group to carbon dioxide. The two catalytic domains are connected by a third intermediate linker domain that transfers the formyl group, covalently attached to the sulfhydryl group of the phosphopantetheine arm, from the N-terminal domain to the C-terminal domain.


Pssm-ID: 187716 [Multi-domain]  Cd Length: 203  Bit Score: 87.89  E-value: 1.29e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479   1 MRIVFMGTPAFAVPALASLLAAGHEVIAVYSQPPRKSgrghrvQKTPVHQFAEPHGIEVRTPDR--LKG---PTETQRFV 75
Cdd:cd08647    1 MKIAVIGQSLFGQEVYKELRKEGHEVVGVFTIPDKDG------KADPLALEAEKDGVPVFKFPRwrAKGqaiPEVVAKYK 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  76 DLNADLGIVVAYGLILPTAFLEAPRHGCLNLHASLLPRWRGAAPVQRAIMAGDAMTGVQVMQMEKGLDTGPILLSETVPI 155
Cdd:cd08647   75 ALGAELNVLPFCSQFIPMEVIDAPKHGSIIYHPSILPRHRGASAINWTLIHGDKKAGFTIFWADDGLDTGPILLQKECDV 154
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 303299479 156 GADQTAGQLTD-ILAQTGAELLPRALAALDRGGLQATPQSKSGVTYaEKI 204
Cdd:cd08647  155 LPNDTVDTLYNrFLYPEGIKAMVEAVRLIAEGKAPRIPQPEEGATY-EGI 203
FMT_core_like_5 cd08823
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
76-184 9.34e-19

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187725 [Multi-domain]  Cd Length: 177  Bit Score: 82.11  E-value: 9.34e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  76 DLNADLGIVVAYGLILPTAFLEAPRHGCLNLHASLLPRWRGAAPVQRAIMAGDAMTGVQVMQMEKGLDTGPILLSETVPI 155
Cdd:cd08823   69 ALAADTVVVFTFPYRIPQHILDLPPLGFYNLHPGLLPAYRGPDPLFWQIRNQEQETAITVHKMTAEIDRGPIVLEQFTPI 148
                         90       100
                 ....*....|....*....|....*....
gi 303299479 156 GADQTAGQLTDILAQTGAELLPRALAALD 184
Cdd:cd08823  149 HPDDTYGLLCSRLAMLAVGLLEELYQNLA 177
FMT_core_NRPS_like cd08649
N-terminal formyl transferase catalytic core domain of NRPS_like proteins, one of the proteins ...
4-183 3.42e-17

N-terminal formyl transferase catalytic core domain of NRPS_like proteins, one of the proteins involved in the synthesis of Oxazolomycin; This family represents the N-terminal formyl transferase catalytic core domain present in a subgroup of non-ribosomal peptide synthetases. In Streptomyces albus a member of this family has been shown to be involved in the synthesis of oxazolomycin (OZM). OZM is a hybrid peptide-polyketide antibiotic and exhibits potent antitumor and antiviral activities. It is a multi-domain protein consisting of a formyl transferase domain, a Flavin-utilizing monoxygenase domain, a LuxE domain functioning as an acyl protein synthetase and a pp-binding domain, which may function as an acyl carrier. It shows sequence similarity with other peptide-polyketide biosynthesis proteins.


Pssm-ID: 187718 [Multi-domain]  Cd Length: 166  Bit Score: 77.68  E-value: 3.42e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479   4 VFMGTPAFAVPALASLLAAGHEVIAVYSQPPrksgrghrvqktPVHQFAEPHGIEVRTPdrLKGPTETQRfvDLNADLGI 83
Cdd:cd08649    3 VIIGGGTLLIQCAEQLLAAGHRIAAVVSTDP------------AIRAWAAAEGIAVLEP--GEALEELLS--DEPFDWLF 66
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  84 VVAYGLILPTAFLEAPRHGCLNLHASLLPRWRGA-APVQrAIMAGDAMTGVQVMQMEKGLDTGPILLSETVPIGADQTAG 162
Cdd:cd08649   67 SIVNLRILPSEVLALPRKGAINFHDGPLPRYAGLnATSW-ALLAGETRHGVTWHRIEEGVDAGDILVQRPFDIAPDDTAL 145
                        170       180
                 ....*....|....*....|.
gi 303299479 163 QLTDILAQTGAELLPRALAAL 183
Cdd:cd08649  146 SLNLKCYEAGIEGFGELIDEL 166
FMT_core_like_3 cd08653
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
56-183 4.98e-17

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187721 [Multi-domain]  Cd Length: 152  Bit Score: 76.48  E-value: 4.98e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  56 GIEVRTPDRLKGPTETQRFVDLNADLgIVVAYGLILPTAFLEAPRHGCLNLHASLLPRWRGAAPVQRAIMAGDA-MTGVQ 134
Cdd:cd08653   25 GVGVIVVNSINGPEVVAALRALAPDV-VSVYGCGIIKDALLAIPPLGVLNLHGGILPDYRGVHTGFWALANGDPdNVGVT 103
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 303299479 135 VMQMEKGLDTGPILLSETVPIGADQTAGQLTDILAQTGAELLPRALAAL 183
Cdd:cd08653  104 VHLVDAGIDTGDVLAQARPPLAAGDTLLSLYLRLYRAGVELMVEAIADL 152
PurN COG0299
Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and ...
50-189 1.77e-16

Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]; Folate-dependent phosphoribosylglycinamide formyltransferase PurN is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 440068 [Multi-domain]  Cd Length: 202  Bit Score: 76.23  E-value: 1.77e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  50 QFAEPHGIEVRTPDRLKGPTE-------TQRFVDLNADLgIVVA-YGLILPTAFLEAPRHGCLNLHASLLPRWRGAAPVQ 121
Cdd:COG0299   45 ERARAAGIPTFVLDHKDFPSReafdaalLEALDAYGPDL-VVLAgFMRILTPEFVRAFPGRIINIHPSLLPAFPGLHAHR 123
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 303299479 122 RAIMAGDAMTGVQVMQMEKGLDTGPILLSETVPIGADQTAGQLTD-ILAQtGAELLPRALAALDRGGLQ 189
Cdd:COG0299  124 QALEAGVKVTGCTVHFVDEEVDTGPIIAQAAVPVLPDDTEETLAArILEQ-EHRLYPEAIRLLAEGRLT 191
FMT_core_GART cd08645
Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART); ...
50-183 8.00e-16

Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART); Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.


Pssm-ID: 187714 [Multi-domain]  Cd Length: 183  Bit Score: 73.96  E-value: 8.00e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  50 QFAEPHGIEVRTPDRLKGPTE-------TQRFVDLNADLgIVVA-YGLILPTAFLEAPRHGCLNLHASLLPRWRGAAPVQ 121
Cdd:cd08645   43 ERAKKAGIPTFVINRKDFPSReefdealLELLKEYKVDL-IVLAgFMRILSPEFLEAFPGRIINIHPSLLPKFYGLHAHE 121
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 303299479 122 RAIMAGDAMTGVQVMQMEKGLDTGPILLSETVPIGADQTAGQLTD-ILAqtgAE--LLPRALAAL 183
Cdd:cd08645  122 AALEAGVKVTGCTVHFVDEEVDTGPIIAQAAVPVLPGDTPETLAErIHA---LEhrLYPEAIKLL 183
FMT_core_like_6 cd08820
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
2-175 3.54e-15

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187722 [Multi-domain]  Cd Length: 173  Bit Score: 72.09  E-value: 3.54e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479   2 RIVFMGTPAFAVPALASLL----AAGHEVIAVYSQPprkSGRGhrvqktpVHQFAEPhgIEVRTPDRLKGPTETQRFVDL 77
Cdd:cd08820    1 RIVFLGQKPIGEECLRTLLrlqdRGSFEIIAVLTNT---SPAD-------VWEGSEP--LYDIGSTERNLHKLLEILENK 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  78 NADLGIVVAYGLILPTAFLEAPRHGCLNLHASLLPRWRGAAPVQRAIMAGDAMTGVQVMQMEKGLDTGPILLSETVPIGA 157
Cdd:cd08820   69 GVDILISVQYHWILPGSILEKAKEIAFNLHNAPLPEYRGCNQFSHAILNGDDQFGTTIHWMAEGIDSGDIIFEKRFPIPS 148
                        170
                 ....*....|....*...
gi 303299479 158 DQTAGQLTDILAQTGAEL 175
Cdd:cd08820  149 DCTVISLYILAHYAAIAL 166
PurN TIGR00639
phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; This model ...
80-188 1.04e-13

phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; This model describes phosphoribosylglycinamide formyltransferase (GAR transformylase), one of several proteins in formyl_transf (pfam00551). This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. PurT, a different GAR transformylase, uses ATP and formate rather than formyl tetrahydrofolate. Experimental proof includes complementation of E. coli purN mutants by orthologs from vertebrates (where it is a domain of a multifunctional protein), Bacillus subtilis, and Arabidopsis. No archaeal example was detected. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 161973 [Multi-domain]  Cd Length: 190  Bit Score: 68.55  E-value: 1.04e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479   80 DLGIVVAYGLILPTAFLEAPRHGCLNLHASLLPRWRGAAPVQRAIMAGDAMTGVQVMQMEKGLDTGPILLSETVPIGADQ 159
Cdd:TIGR00639  81 DLVVLAGFMRILGPTFLSRFAGRILNIHPSLLPAFPGLHAVEQALEAGVKESGCTVHYVDEEVDTGPIIAQAKVPILPED 160
                          90       100
                  ....*....|....*....|....*....
gi 303299479  160 TAGQLTDILAQTGAELLPRALAALDRGGL 188
Cdd:TIGR00639 161 TEETLEQRIHKQEHRIYPLAIAWFAQGRL 189
FMT_core_like_2 cd08822
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
1-201 8.15e-13

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187724 [Multi-domain]  Cd Length: 192  Bit Score: 65.94  E-value: 8.15e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479   1 MRIVFMGTPAFAVPALASLLAAGHEVIAVYSqpPRKSGRGHRVQKTPVHQFAEPHGIEVRTPDRLKGPTetqrfvdlnaD 80
Cdd:cd08822    1 MKIAIAGQKWFGTAVLEALRARGIALLGVAA--PEEGDRLAAAARTAGSRGLPRAGVAVLPADAIPPGT----------D 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  81 LgIVVAYG-LILPTAFLEAPRHGCLNLHASLLPRWRGAAPVQRAIMAGDAMTGVQVMQMEKGLDTGPILLSETVPIGADQ 159
Cdd:cd08822   69 L-IVAAHChAFISAKTRARARLGAIGYHPSLLPRHRGRDAVEWTIRMRDPITGGTVYHLDDGVDGGPIAAQDWCHVRPGD 147
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 303299479 160 TAGQL-TDILAQTGAELLPRALAALDRGG-LQATPQSKSGVTYA 201
Cdd:cd08822  148 TAAELwRRALAPMGVKLLTQVIDALLRGGnLPAQPQDERLATWE 191
PLN02828 PLN02828
formyltetrahydrofolate deformylase
42-148 5.73e-07

formyltetrahydrofolate deformylase


Pssm-ID: 178422  Cd Length: 268  Bit Score: 50.13  E-value: 5.73e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  42 RVQKTPVHQFAEPHGIEVRTPDRLKGPTETQRFVDL--NADLGIVVAYGLILPTAFLEAPRHGCLNLHASLLPRWRGAAP 119
Cdd:PLN02828 109 RGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELvkGTDFLVLARYMQILSGNFLKGYGKDIINIHHGLLPSFKGGNP 188
                         90       100
                 ....*....|....*....|....*....
gi 303299479 120 VQRAIMAGDAMTGVQVMQMEKGLDTGPIL 148
Cdd:PLN02828 189 SKQAFDAGVKLIGATSHFVTEELDAGPII 217
FMT_core_like_1 cd08821
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
103-173 1.85e-06

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187723 [Multi-domain]  Cd Length: 211  Bit Score: 47.70  E-value: 1.85e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 303299479 103 CLNLHASLLPRWRGAAPVQRAIMAGDAMTGVQVMQMEKGLDTGPILLSEtvPIgadQTAGQLTDILAQTGA 173
Cdd:cd08821   67 CVVFHMTDLPYGRGGSPLQNLIVRGHYETKISALKMEKGLDTGPIYLKR--DL---SLKGTAEEIYERASK 132
PLN02331 PLN02331
phosphoribosylglycinamide formyltransferase
50-183 4.89e-06

phosphoribosylglycinamide formyltransferase


Pssm-ID: 177965 [Multi-domain]  Cd Length: 207  Bit Score: 46.61  E-value: 4.89e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  50 QFAEPHGIEVRTPDRLKGPTE---TQRFVD----LNADLGIVVAYGLILPTAFLEAPRHGCLNLHASLLPRWRGAA---- 118
Cdd:PLN02331  43 EYARENGIPVLVYPKTKGEPDglsPDELVDalrgAGVDFVLLAGYLKLIPVELVRAYPRSILNIHPALLPAFGGKGyygi 122
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 303299479 119 PVQRAIMAGDA-MTGVQVMQMEKGLDTGPILLSETVPIGADQTAGQLTDILAQTGAELLPRALAAL 183
Cdd:PLN02331 123 KVHKAVIASGArYSGPTVHFVDEHYDTGRILAQRVVPVLATDTPEELAARVLHEEHQLYVEVVAAL 188
Arna_FMT_C cd08702
C-terminal subdomain of the formyltransferase domain on ArnA, which modifies lipid A with ...
212-306 4.97e-06

C-terminal subdomain of the formyltransferase domain on ArnA, which modifies lipid A with 4-amino-4-deoxy-l-arabinose; Domain found in ArnA with similarity to the C-terminal domain of Formyltransferase. ArnA is a bifunctional enzyme required for the modification of lipid A with 4-amino-4-deoxy-l-arabinose (Ara4N) that leads to resistance to cationic antimicrobial peptides (CAMPs) and clinical antimicrobials such as polymyxin. The C-terminal domain of ArnA is a dehydrogenase domain that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto-arabinose (UDP-Ara4O) and the N-terminal domain is a formyltransferase domain that catalyzes the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido-arabinose (UDP-L-Ara4FN). This domain family represents the C-terminal subdomain of the formyltransferase domain, downstream of the N-terminal subdomain containing the catalytic center. ArnA forms a hexameric structure (a dimer of trimers), in which the dehydrogenase domains are arranged at the center with the transformylase domains on the outside of the complex.


Pssm-ID: 187730  Cd Length: 92  Bit Score: 44.15  E-value: 4.97e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479 212 DWSGSARVLDRHIRGLS-PFPGAWVMVhrGGEpiRLKLLDSRLVEGEGADGGAVgaapgTILPAPEDRVRVATGQGALDL 290
Cdd:cd08702    6 DWRMSAREIYNLVRAVTkPYPGAFTFV--GGQ--KIKIWKARPVDDAFYNGEPG-----KVLSVDGDPLIVACGDGALEI 76
                         90
                 ....*....|....*.
gi 303299479 291 LLLQRPGKAPQDAAAF 306
Cdd:cd08702   77 LEAELDGGLPLAGEQL 92
FMT_core_Formyl-FH4-Hydrolase_C cd08648
Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain; ...
51-155 9.20e-06

Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain; Formyl-FH4 Hydrolase catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formate is the substrate of phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase has been proposed to regulate the balance of FH4 and C1-FH4 in the cell. The enzyme uses methionine and glycine to sense the pools of C1-FH4 and FH4, respectively. This domain belongs to the formyltransferase (FMT) domain superfamily. Members of this family have an N-terminal ACT domain, which is commonly involved in specifically bind an amino acid or other small ligand leading to regulation of the enzyme. The N-terminal of this protein family may be responsible for the binding of the regulators methionine and glycine.


Pssm-ID: 187717 [Multi-domain]  Cd Length: 196  Bit Score: 45.63  E-value: 9.20e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  51 FAEPHGIE---VRTPDRLKGPTEtQRFVDL----NADLgIVVA-YGLILPTAFLEAPRHGCLNLHASLLPRWRGAAPVQR 122
Cdd:cd08648   43 LAERFGIPfhhIPVTKDTKAEAE-AEQLELleeyGVDL-VVLArYMQILSPDFVERYPNRIINIHHSFLPAFKGAKPYHQ 120
                         90       100       110
                 ....*....|....*....|....*....|...
gi 303299479 123 AIMAGDAMTGVQVMQMEKGLDTGPILLSETVPI 155
Cdd:cd08648  121 AFERGVKLIGATAHYVTEELDEGPIIEQDVERV 153
purU PRK13010
formyltetrahydrofolate deformylase; Reviewed
79-182 9.04e-03

formyltetrahydrofolate deformylase; Reviewed


Pssm-ID: 139334 [Multi-domain]  Cd Length: 289  Bit Score: 37.08  E-value: 9.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303299479  79 ADLGIVVAYGLILPTAFLEAPRHGCLNLHASLLPRWRGAAPVQRAIMAGDAMTGVQVMQMEKGLDTGPILLSETVPIGAD 158
Cdd:PRK13010 170 AELVVLARYMQVLSDDLSRKLSGRAINIHHSFLPGFKGARPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQDVERVDHS 249
                         90       100
                 ....*....|....*....|....*...
gi 303299479 159 QTAGQLT----DILAQTgaelLPRALAA 182
Cdd:PRK13010 250 YSPEDLVakgrDVECLT----LARAVKA 273
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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