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Conserved domains on  [gi|306415771|gb|ADM86789|]
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NADH dehydrogenase subunit 1, partial (mitochondrion) [Rafflesia azlanii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06076 super family cl00469
NADH-quinone oxidoreductase subunit NuoH;
1-35 1.60e-07

NADH-quinone oxidoreductase subunit NuoH;


The actual alignment was detected with superfamily member MTH00054:

Pssm-ID: 469782  Cd Length: 324  Bit Score: 44.33  E-value: 1.60e-07
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 306415771   1 SIGLILITVLICVGPRNSSEIVMAQKQIWSGIPLF 35
Cdd:MTH00054 149 SIGLIIISVVLCVGSLNLTEIVLAQKNIWFIFPLF 183
 
Name Accession Description Interval E-value
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 1-35 1.60e-07

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 44.33  E-value: 1.60e-07
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 306415771   1 SIGLILITVLICVGPRNSSEIVMAQKQIWSGIPLF 35
Cdd:MTH00054 149 SIGLIIISVVLCVGSLNLTEIVLAQKNIWFIFPLF 183
 
Name Accession Description Interval E-value
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 1-35 1.60e-07

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 44.33  E-value: 1.60e-07
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 306415771   1 SIGLILITVLICVGPRNSSEIVMAQKQIWSGIPLF 35
Cdd:MTH00054 149 SIGLIIISVVLCVGSLNLTEIVLAQKNIWFIFPLF 183
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 1-35 1.34e-06

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 41.93  E-value: 1.34e-06
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 306415771   1 SIGLILITVLICVGPRNSSEIVMAQKQIWSGIPLF 35
Cdd:MTH00029 154 AIGLIIISVILCVGSLNISEIVISQRSVWLIIPLF 188
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 1-35 1.74e-05

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 38.56  E-value: 1.74e-05
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 306415771   1 SIGLILITVLICVGPRNSSEIVMAQKQ-IWSGIPLF 35
Cdd:MTH00216 153 SIGLIIISVLLCVGSLSITEIVLAQNNgIWFFFPLF 188
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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