|
Name |
Accession |
Description |
Interval |
E-value |
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-301 |
2.26e-163 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 456.11 E-value: 2.26e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKAIGYMPE 80
Cdd:COG4152 1 MLELKGLTKRF--GDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPEDRRRIGYLPE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 81 ERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFS 160
Cdd:COG4152 79 ERGLYPKMKVGEQLVYLARLKGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILDEPFS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 161 GFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEVRERFKQNVYEVVLAHSNSELle 240
Cdd:COG4152 159 GLDPVNVELLKDVIRELAAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRRQFGRNTLRLEADGDAGWL-- 236
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 312445476 241 nfKSEFSPSDWQEKDGLISFNLKYQGEQNQLLSKLMPLGSIRSFNEKIPSMNEVFITAVQN 301
Cdd:COG4152 237 --RALPGVTVVEEDGDGAELKLEDGADAQELLRALLARGPVREFEEVRPSLNEIFIEVVGE 295
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
2-213 |
2.00e-107 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 310.75 E-value: 2.00e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKAIGYMPEE 81
Cdd:cd03269 1 LEVENVTKRF--GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 82 RGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSG 161
Cdd:cd03269 79 RGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSG 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 312445476 162 FDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDG 213
Cdd:cd03269 159 LDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
2-222 |
1.70e-82 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 248.44 E-value: 1.70e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKA---IGYM 78
Cdd:COG1131 1 IEVRGLTKRY--GDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVrrrIGYV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 79 PEERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEP 158
Cdd:COG1131 79 PQEPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEP 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 312445476 159 FSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEVRERF 222
Cdd:COG1131 159 TSGLDPEARRELWELLRELAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKARL 222
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
1-240 |
1.04e-71 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 221.27 E-value: 1.04e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNE---ILSPHHIKAIGY 77
Cdd:COG4555 1 MIEVENLSKKY--GKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEdvrKEPREARRQIGV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 78 MPEERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDE 157
Cdd:COG4555 79 LPDERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 158 PFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEVRERF-KQNVYEVVLAHSNS 236
Cdd:COG4555 159 PTNGLDVMARRLLREILRALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEIgEENLEDAFVALIGS 238
|
....
gi 312445476 237 ELLE 240
Cdd:COG4555 239 EEGE 242
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
2-208 |
2.38e-64 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 199.93 E-value: 2.38e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKA---IGYM 78
Cdd:cd03230 1 IEVRNLSKRY--GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVkrrIGYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 79 PEERGLYKNMTVGDQIlyfgelkgmsknealtqakywferlnidqwwkkklsELSKGMAQKIQFVVTVLHRPKLLILDEP 158
Cdd:cd03230 79 PEEPSLYENLTVRENL------------------------------------KLSGGMKQRLALAQALLHDPELLILDEP 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 312445476 159 FSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSK 208
Cdd:cd03230 123 TSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGR 172
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1-213 |
5.65e-56 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 180.26 E-value: 5.65e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGRK--VALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFID--NEILSPHHIKA-I 75
Cdd:cd03266 1 MITADALTKRFRDVKKtvQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDgfDVVKEPAEARRrL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 76 GYMPEERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLIL 155
Cdd:cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 312445476 156 DEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDG 213
Cdd:cd03266 161 DEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
2-213 |
2.13e-50 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 165.83 E-value: 2.13e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYdaGRKVALSDFSIEVPTGsIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKA---IGYM 78
Cdd:cd03264 1 LQLENLTKRY--GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLrrrIGYL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 79 PEERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEP 158
Cdd:cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 312445476 159 FSGFDPVN----ANLIKDQiinlkNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDG 213
Cdd:cd03264 158 TAGLDPEErirfRNLLSEL-----GEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
9-296 |
3.49e-50 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 167.95 E-value: 3.49e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 9 KTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDN-EILS-PHHIK-AIGYMPEERGLY 85
Cdd:TIGR01188 1 KVY--GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGyDVVRePRKVRrSIGIVPQYASVD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 86 KNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPV 165
Cdd:TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 166 NANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEVRERFKQNVYEVV------LAHSNSELL 239
Cdd:TIGR01188 159 TRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESRprdiqsLKVEVSMLI 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 312445476 240 ENFkseFSPSDWQEKDGLISFNLK-YQGEQNQLLSKLMPLGS-----IRSFNEKIPSMNEVFI 296
Cdd:TIGR01188 239 AEL---GETGLGLLAVTVDSDRIKiLVPDGDETVPEIVEAAIrngirIRSISTERPSLDDVFL 298
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
2-208 |
9.27e-48 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 159.21 E-value: 9.27e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKA---IGYM 78
Cdd:cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAArqsLGYC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 79 PEERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEP 158
Cdd:cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 312445476 159 FSGFDPVNANLIKDQIINLKNNgTTIILSTHRMESVEEMCDYVALVNHSK 208
Cdd:cd03263 161 TSGLDPASRRAIWDLILEVRKG-RSIILTTHSMDEAEALCDRIAIMSDGK 209
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
2-213 |
1.53e-46 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 155.45 E-value: 1.53e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHH--IKAIGYMP 79
Cdd:cd03268 1 LKTNDLTKTY--GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIeaLRRIGALI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 80 EERGLYKNMTVGDQILYFGELKGMSK---NEALtqakywfERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILD 156
Cdd:cd03268 79 EAPGFYPNLTARENLRLLARLLGIRKkriDEVL-------DVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILD 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 312445476 157 EPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDG 213
Cdd:cd03268 152 EPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
2-218 |
6.25e-46 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 154.80 E-value: 6.25e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDAGRKvALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKAI----GY 77
Cdd:COG1122 1 IELENLSFSYPGGTP-ALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLRELrrkvGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 78 M---PEerglykNM----TVGDQILyFG-ELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGmaQKiQFVV--TVL 147
Cdd:COG1122 80 VfqnPD------DQlfapTVEEDVA-FGpENLGLPREEIRERVEEALELVGLEHLADRPPHELSGG--QK-QRVAiaGVL 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 312445476 148 -HRPKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEV 218
Cdd:COG1122 150 aMEPEVLVLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREV 221
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
3-208 |
9.55e-42 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 143.38 E-value: 9.55e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 3 RAEHITKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKA----IGYM 78
Cdd:cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKElrrkVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 79 ---PEeRGLYkNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLIL 155
Cdd:cd03225 81 fqnPD-DQFF-GPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 312445476 156 DEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSK 208
Cdd:cd03225 159 DEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
2-208 |
4.93e-40 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 138.81 E-value: 4.93e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILS--PHHIKAIGYMP 79
Cdd:cd03259 1 LELKGLSKTY--GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTgvPPERRNIGMVF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 80 EERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPF 159
Cdd:cd03259 79 QDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 312445476 160 SGFDPVNANLIKDQIINL-KNNGTTIILSTHRMESVEEMCDYVALVNHSK 208
Cdd:cd03259 159 SALDAKLREELREELKELqRELGITTIYVTHDQEEALALADRIAVMNEGR 208
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
4-219 |
1.04e-39 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 138.27 E-value: 1.04e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 4 AEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDN-EILS-PHHIKA-IGYMPE 80
Cdd:cd03265 3 VENLVKKY--GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGhDVVRePREVRRrIGIVFQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 81 ERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFS 160
Cdd:cd03265 81 DLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 161 GFDPVNANLIKDQIINLK-NNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEVR 219
Cdd:cd03265 161 GLDPQTRAHVWEYIEKLKeEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-218 |
4.31e-39 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 137.53 E-value: 4.31e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHiKAIGYMPE 80
Cdd:COG1121 6 AIELENLTVSY--GGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRAR-RRIGYVPQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 81 ERGLYKN--MTVGDQIL-----YFGELKGMSK------NEALtqakywfERLNIDQWWKKKLSELSKGMAQKIQFVVTVL 147
Cdd:COG1121 83 RAEVDWDfpITVRDVVLmgrygRRGLFRRPSRadreavDEAL-------ERVGLEDLADRPIGELSGGQQQRVLLARALA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 312445476 148 HRPKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHsKKILDGKVFEV 218
Cdd:COG1121 156 QDPDLLLLDEPFAGVDAATEEALYELLRELRREGKTILVVTHDLGAVREYFDRVLLLNR-GLVAHGPPEEV 225
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
2-216 |
6.27e-39 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 136.52 E-value: 6.27e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILS--PHHIKA---IG 76
Cdd:cd03218 1 LRAENLSKRY--GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITklPMHKRArlgIG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 77 YMPEERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILD 156
Cdd:cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLD 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 312445476 157 EPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCD--YValvnhskkILDGKVF 216
Cdd:cd03218 159 EPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDraYI--------IYEGKVL 212
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-220 |
2.02e-38 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 135.49 E-value: 2.02e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEI---LSPHHIKA--- 74
Cdd:COG1127 5 MIEVRNLTKSF--GDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDitgLSEKELYElrr 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 75 -IGYMPEERGLYKNMTVGDQILyFG--ELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPK 151
Cdd:COG1127 83 rIGMLFQGGALFDSLTVFENVA-FPlrEHTDLSEAEIRELVLEKLELVGLPGAADKMPSELSGGMRKRVALARALALDPE 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 152 LLILDEPFSGFDPVNANLIKDQIINL-KNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEVRE 220
Cdd:COG1127 162 ILLYDEPTAGLDPITSAVIDELIRELrDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELLA 231
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
3-206 |
5.89e-38 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 133.43 E-value: 5.89e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 3 RAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIR-IINQITQAdSGKVFIDNEILSPHHiKAIGYMPEE 81
Cdd:cd03235 1 EVEDLTVSY--GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKaILGLLKPT-SGSIRVFGKPLEKER-KRIGYVPQR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 82 RGLYKNM--TVGDQIL-----YFGELKGMSK------NEALtqakywfERLNIDQWWKKKLSELSKGMAQKIQFVVTVLH 148
Cdd:cd03235 77 RSIDRDFpiSVRDVVLmglygHKGLFRRLSKadkakvDEAL-------ERVGLSELADRQIGELSGGQQQRVLLARALVQ 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 312445476 149 RPKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNH 206
Cdd:cd03235 150 DPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNR 207
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
2-203 |
1.08e-37 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 132.98 E-value: 1.08e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDAG--RKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHiKAIGYMP 79
Cdd:cd03293 1 LEVRNVSKTYGGGggAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPG-PDRGYVF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 80 EERGLYKNMTVGDQILyFG-ELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEP 158
Cdd:cd03293 80 QQDALLPWLTVLDNVA-LGlELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEP 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 312445476 159 FSGFDPVNANLIKDQIINL-KNNGTTIILSTHrmeSVEE---MCDYVAL 203
Cdd:cd03293 159 FSALDALTREQLQEELLDIwRETGKTVLLVTH---DIDEavfLADRVVV 204
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1-216 |
2.49e-37 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 132.85 E-value: 2.49e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDaGRKVaLSDFSIEVPTGSIYGLLGPNGAGK-TSFiRIINQITQADSGKVFIDNEILS--PHHIKA--- 74
Cdd:COG1137 3 TLEAENLVKSYG-KRTV-VKDVSLEVNQGEIVGLLGPNGAGKtTTF-YMIVGLVKPDSGRIFLDGEDIThlPMHKRArlg 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 75 IGYMPEERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLI 154
Cdd:COG1137 80 IGYLPQEASIFRKLTVEDNILAVLELRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNPKFIL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 312445476 155 LDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHrmeSVEE---MCDYVALVNhskkilDGKVF 216
Cdd:COG1137 160 LDEPFAGVDPIAVADIQKIIRHLKERGIGVLITDH---NVREtlgICDRAYIIS------EGKVL 215
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-196 |
5.33e-36 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 129.82 E-value: 5.33e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTY--DAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNE-ILSPHHikAIGY 77
Cdd:COG1116 7 ALELRGVSKRFptGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKpVTGPGP--DRGV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 78 MPEERGLYKNMTVGDQILyFG-ELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILD 156
Cdd:COG1116 85 VFQEPALLPWLTVLDNVA-LGlELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPEVLLMD 163
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 312445476 157 EPFSGFDPVNANLIKDQIINL-KNNGTTIILSTHrmeSVEE 196
Cdd:COG1116 164 EPFGALDALTRERLQDELLRLwQETGKTVLFVTH---DVDE 201
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
2-218 |
7.72e-36 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 128.93 E-value: 7.72e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILS--PHHIKA---IG 76
Cdd:TIGR04406 2 LVAENLIKSY--KKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDIThlPMHERArlgIG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 77 YMPEERGLYKNMTVGDQILYFGEL-KGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLIL 155
Cdd:TIGR04406 80 YLPQEASIFRKLTVEENIMAVLEIrKDLDRAEREERLEALLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPKFILL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 312445476 156 DEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEV 218
Cdd:TIGR04406 160 DEPFAGVDPIAVGDIKKIIKHLKERGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEI 222
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
3-208 |
1.65e-35 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 125.43 E-value: 1.65e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 3 RAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKAigympeer 82
Cdd:cd00267 1 EIENLSFRY--GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEE-------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 83 glyknmtVGDQILYfgelkgmsknealtqakywferlnidqwwkkkLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGF 162
Cdd:cd00267 71 -------LRRRIGY--------------------------------VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGL 111
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 312445476 163 DPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSK 208
Cdd:cd00267 112 DPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-214 |
1.82e-35 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 129.54 E-value: 1.82e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEIL---SPHHIKAIGYM 78
Cdd:PRK13537 8 IDFRNVEKRY--GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVpsrARHARQRVGVV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 79 PEERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEP 158
Cdd:PRK13537 86 PQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEP 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 312445476 159 FSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGK 214
Cdd:PRK13537 166 TTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGA 221
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
2-208 |
2.97e-35 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 125.38 E-value: 2.97e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNE------ILSPHHIKAI 75
Cdd:cd03229 1 LELKNVSKRY--GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEdltdleDELPPLRRRI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 76 GYMPEERGLYKNMTVGDQILYfgelkgmsknealtqakywferlnidqwwkkklsELSKGMAQKIQFVVTVLHRPKLLIL 155
Cdd:cd03229 79 GMVFQDFALFPHLTVLENIAL----------------------------------GLSGGQQQRVALARALAMDPDVLLL 124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 312445476 156 DEPFSGFDPVNANLIKDQIINLK-NNGTTIILSTHRMESVEEMCDYVALVNHSK 208
Cdd:cd03229 125 DEPTSALDPITRREVRALLKSLQaQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-219 |
4.62e-35 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 127.08 E-value: 4.62e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNE-I--LSPHHIKAigy 77
Cdd:COG0411 4 LLEVRGLTKRF--GGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRdItgLPPHRIAR--- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 78 mpeeRG---------LYKNMTVGDQIL----------YFGELKGMSKN-----EALTQAKYWFERLNIDQWWKKKLSELS 133
Cdd:COG0411 79 ----LGiartfqnprLFPELTVLENVLvaaharlgrgLLAALLRLPRArreerEARERAEELLERVGLADRADEPAGNLS 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 134 KGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNANLIKDQIINLKNN-GTTIILSTHRMESVEEMCDYVALVNHSKKILD 212
Cdd:COG0411 155 YGQQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDErGITILLIEHDMDLVMGLADRIVVLDFGRVIAE 234
|
....*..
gi 312445476 213 GKVFEVR 219
Cdd:COG0411 235 GTPAEVR 241
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1-189 |
5.92e-35 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 125.67 E-value: 5.92e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNE---ILSPHHIKAIGY 77
Cdd:COG4133 2 MLEAENLSCRR--GERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEpirDAREDYRRRLAY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 78 MPEERGLYKNMTVGDQILYFGELKGMSKNEALTQAkyWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDE 157
Cdd:COG4133 80 LGHADGLKPELTVRENLRFWAALYGLRADREAIDE--ALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDE 157
|
170 180 190
....*....|....*....|....*....|..
gi 312445476 158 PFSGFDPVNANLIKDQIINLKNNGTTIILSTH 189
Cdd:COG4133 158 PFTALDAAGVALLAELIAAHLARGGAVLLTTH 189
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
7-229 |
1.74e-34 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 128.02 E-value: 1.74e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 7 ITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILsPHHIKA----IGYMPEER 82
Cdd:PRK13536 47 VSKSY--GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPV-PARARLararIGVVPQFD 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 83 GLYKNMTVGDQILYFGELKGMS--KNEALTQAKYWFERLniDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFS 160
Cdd:PRK13536 124 NLDLEFTVRENLLVFGRYFGMStrEIEAVIPSLLEFARL--ESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTT 201
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 161 GFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFE-VRERFKQNVYEV 229
Cdd:PRK13536 202 GLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHAlIDEHIGCQVIEI 271
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
2-219 |
2.69e-34 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 124.47 E-value: 2.69e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNE-I--LSPHHIKaigym 78
Cdd:cd03219 1 LEVRGLTKRF--GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEdItgLPPHEIA----- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 79 peERG---------LYKNMTVGDQIL---------YFGELKGMSKNEALT-QAKYWFERLNIDQWWKKKLSELSKGMAQK 139
Cdd:cd03219 74 --RLGigrtfqiprLFPELTVLENVMvaaqartgsGLLLARARREEREAReRAEELLERVGLADLADRPAGELSYGQQRR 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 140 IQFVVTVLHRPKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEVR 219
Cdd:cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR 231
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-218 |
1.21e-33 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 128.48 E-value: 1.21e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQAD---SGKVFIDNEILSPHHI----K 73
Cdd:COG1123 4 LLEVRDLSVRYPGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEalrgR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 74 AIGYMPEERGLYKNM-TVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKL 152
Cdd:COG1123 84 RIGMVFQDPMTQLNPvTVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALDPDL 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 312445476 153 LILDEPFSGFDPVNANLIKDQIINL-KNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEV 218
Cdd:COG1123 164 LIADEPTTALDVTTQAEILDLLRELqRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEI 230
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
2-218 |
2.08e-33 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 122.69 E-value: 2.08e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDaGRKVaLSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILS--PHHIKA---IG 76
Cdd:PRK10895 4 LTAKNLAKAYK-GRRV-VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISllPLHARArrgIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 77 YMPEERGLYKNMTVGDQILYFGEL-KGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLIL 155
Cdd:PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIrDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILL 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 312445476 156 DEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEV 218
Cdd:PRK10895 162 DEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
1-217 |
7.46e-33 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 120.69 E-value: 7.46e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGRKV--ALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPH-------H 71
Cdd:cd03257 1 LLEVKNLSVSFPTGGGSvkALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLsrrlrkiR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 72 IKAIGYMPEERGLYKN--MTVGDQI---LYFgeLKGMSKNEALTQAKYW-FERLNIDQWWKKKL-SELSKGMAQKIQFVV 144
Cdd:cd03257 81 RKEIQMVFQDPMSSLNprMTIGEQIaepLRI--HGKLSKKEARKEAVLLlLVGVGLPEEVLNRYpHELSGGQRQRVAIAR 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 312445476 145 TVLHRPKLLILDEPFSGFDPVnanlIKDQIINL-----KNNGTTIILSTHRMESVEEMCDYVALvnhskkILDGKVFE 217
Cdd:cd03257 159 ALALNPKLLIADEPTSALDVS----VQAQILDLlkklqEELGLTLLFITHDLGVVAKIADRVAV------MYAGKIVE 226
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
5-219 |
8.82e-33 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 120.68 E-value: 8.82e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 5 EHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSP-------HHIKAIGY 77
Cdd:cd03261 4 RGLTKSF--GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGlseaelyRLRRRMGM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 78 MPEERGLYKNMTVGDQI---LYfgELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLI 154
Cdd:cd03261 82 LFQSGALFDSLTVFENVafpLR--EHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 312445476 155 LDEPFSGFDPVNANLIKDQIINLKN-NGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEVR 219
Cdd:cd03261 160 YDEPTAGLDPIASGVIDDLIRSLKKeLGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
19-160 |
6.27e-32 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 115.82 E-value: 6.27e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 19 LSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKA----IGYMPEERGLYKNMTVGDQI 94
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSlrkeIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 95 LYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKL----SELSKGMAQKIQFVVTVLHRPKLLILDEPFS 160
Cdd:pfam00005 81 RLGLLLKGLSKREKDARAEEALEKLGLGDLADRPVgerpGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
2-208 |
6.75e-31 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 115.86 E-value: 6.75e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDAGRKvALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNE-ILSPHHIK---AIGY 77
Cdd:cd03295 1 IEFENVTKRYGGGKK-AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEdIREQDPVElrrKIGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 78 MPEERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNID--QWWKKKLSELSKGMAQKIQFVVTVLHRPKLLIL 155
Cdd:cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDpaEFADRYPHELSGGQQQRVGVARALAADPPLLLM 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 312445476 156 DEPFSGFDPVNANLIKDQIINLKNN-GTTIILSTHRMESVEEMCDYVALVNHSK 208
Cdd:cd03295 160 DEPFGALDPITRDQLQEEFKRLQQElGKTIVFVTHDIDEAFRLADRIAIMKNGE 213
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
1-229 |
8.67e-31 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 115.91 E-value: 8.67e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKA----IG 76
Cdd:COG1120 1 MLEAENLSVGY--GGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRElarrIA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 77 YMPEERGLYKNMTVGDQIL-----YFGELKGMSKN--EALTQAkywFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHR 149
Cdd:COG1120 79 YVPQEPPAPFGLTVRELVAlgrypHLGLFGRPSAEdrEAVEEA---LERTGLEHLADRPVDELSGGERQRVLIARALAQE 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 150 PKLLILDEPFSGFDPVNA----NLIKDQIinlKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEV--RERFK 223
Cdd:COG1120 156 PPLLLLDEPTSHLDLAHQlevlELLRRLA---RERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVltPELLE 232
|
....*.
gi 312445476 224 QnVYEV 229
Cdd:COG1120 233 E-VYGV 237
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
2-201 |
3.57e-30 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 113.35 E-value: 3.57e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDAG--RKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILS--PHHIKA--- 74
Cdd:cd03255 1 IELKNLSKTYGGGgeKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISklSEKELAafr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 75 ---IGYMPEERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPK 151
Cdd:cd03255 81 rrhIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 312445476 152 LLILDEPFSGFDPVNAnlikDQIINL-----KNNGTTIILSTHRMEsVEEMCDYV 201
Cdd:cd03255 161 IILADEPTGNLDSETG----KEVMELlrelnKEAGTTIVVVTHDPE-LAEYADRI 210
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-218 |
4.92e-30 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 118.47 E-value: 4.92e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGRK---VALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKAIgy 77
Cdd:COG1123 260 LLEVRNLSKRYPVRGKggvRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRSL-- 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 78 mpeeRGLYKN---------------MTVGDQIlyfGE----LKGMSKNEALTQAKYWFERLNIDQWWKKKL-SELSKGMA 137
Cdd:COG1123 338 ----RELRRRvqmvfqdpysslnprMTVGDII---AEplrlHGLLSRAERRERVAELLERVGLPPDLADRYpHELSGGQR 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 138 QKIQFVVTVLHRPKLLILDEPFSGFDPVnanlIKDQIINL-----KNNGTTIILSTHRMESVEEMCDYVALVNHSKKILD 212
Cdd:COG1123 411 QRVAIARALALEPKLLILDEPTSALDVS----VQAQILNLlrdlqRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVED 486
|
....*.
gi 312445476 213 GKVFEV 218
Cdd:COG1123 487 GPTEEV 492
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1-218 |
8.69e-30 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 112.67 E-value: 8.69e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGRK--VALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILS-------PHH 71
Cdd:cd03258 1 MIELKNVSKVFGDTGGkvTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTllsgkelRKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 72 IKAIGYMPEERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPK 151
Cdd:cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 312445476 152 LLILDEPFSGFDPVNAN----LIKDqiINlKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEV 218
Cdd:cd03258 161 VLLCDEATSALDPETTQsilaLLRD--IN-RELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
2-227 |
1.07e-29 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 112.66 E-value: 1.07e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDAGRKvALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFI-DNEI--LSPHHIKA---- 74
Cdd:cd03256 1 IEVENLSKTYPNGKK-ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIdGTDInkLKGKALRQlrrq 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 75 IGYMPEERGLYKNMTVGDQILyFGELKGMS---------KNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVT 145
Cdd:cd03256 80 IGMIFQQFNLIERLSVLENVL-SGRLGRRStwrslfglfPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 146 VLHRPKLLILDEPFSGFDPVNA----NLIKDqiINlKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEVRER 221
Cdd:cd03256 159 LMQQPKLILADEPVASLDPASSrqvmDLLKR--IN-REEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTDE 235
|
....*.
gi 312445476 222 FKQNVY 227
Cdd:cd03256 236 VLDEIY 241
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
2-220 |
1.51e-29 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 111.76 E-value: 1.51e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNE-I--LSPHHI--KAIG 76
Cdd:cd03224 1 LEVENLNAGY--GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRdItgLPPHERarAGIG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 77 YMPEERGLYKNMTVGDQILYFGELKGMSKNEALTQAKY-WFERLniDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLIL 155
Cdd:cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYeLFPRL--KERRKQLAGTLSGGEQQMLAIARALMSRPKLLLL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 312445476 156 DEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEVRE 220
Cdd:cd03224 157 DEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
2-213 |
2.01e-29 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 112.04 E-value: 2.01e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDAGRK-------------------VALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFI 62
Cdd:cd03267 1 IEVSNLSKSYRVYSKepgligslkslfkrkyrevEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 63 DNEI---LSPHHIKAIGYMPEERG-LYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQ 138
Cdd:cd03267 81 AGLVpwkRRKKFLRRIGVVFGQKTqLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRM 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 312445476 139 KIQFVVTVLHRPKLLILDEPFSGFDPVNANLIKDQIINL-KNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDG 213
Cdd:cd03267 161 RAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYnRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
1-221 |
3.08e-29 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 110.91 E-value: 3.08e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGRKvALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILS-------PHHIK 73
Cdd:COG2884 1 MIRFENVSKRYPGGRE-ALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSrlkrreiPYLRR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 74 AIGYMPEERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLL 153
Cdd:COG2884 80 RIGVVFQDFRLLPDRTVYENVALPLRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPELL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 312445476 154 ILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHrmesveemcDYvALVNHSKK----ILDGKVFEVRER 221
Cdd:COG2884 160 LADEPTGNLDPETSWEIMELLEEINRRGTTVLIATH---------DL-ELVDRMPKrvleLEDGRLVRDEAR 221
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
2-206 |
3.17e-29 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 109.39 E-value: 3.17e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDN---EILSPHHI-KAIGY 77
Cdd:cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGvdlRDLDLESLrKNIAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 78 MPEERGLYkNMTVGDqilyfgelkgmsknealtqakywferlNIdqwwkkklseLSKGMAQKIQFVVTVLHRPKLLILDE 157
Cdd:cd03228 81 VPQDPFLF-SGTIRE---------------------------NI----------LSGGQRQRIAIARALLRDPPILILDE 122
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 312445476 158 PFSGFDPVNANLIKDQIINLKnNGTTIILSTHRMESVeEMCDYVALVNH 206
Cdd:cd03228 123 ATSALDPETEALILEALRALA-KGKTVIVIAHRLSTI-RDADRIIVLDD 169
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-294 |
3.73e-29 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 113.26 E-value: 3.73e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTY-----DAGRK--------------VALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVF 61
Cdd:COG4586 1 IIEVENLSKTYrvyekEPGLKgalkglfrreyrevEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 62 IDNEIlsPH-----HIKAIGYMPEERG-LYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKG 135
Cdd:COG4586 81 VLGYV--PFkrrkeFARRIGVVFGQRSqLWWDLPAIDSFRLLKAIYRIPDAEYKKRLDELVELLDLGELLDTPVRQLSLG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 136 MAQKIQFVVTVLHRPKLLILDEPFSGFDpVNAnliKDQIINL-----KNNGTTIILSTHRMESVEEMCDYVALVNHSKKI 210
Cdd:COG4586 159 QRMRCELAAALLHRPKILFLDEPTIGLD-VVS---KEAIREFlkeynRERGTTILLTSHDMDDIEALCDRVIVIDHGRII 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 211 LDGKVFEVRERF-KQNVYEVVLAHSNSEL-LENFKsefspsDWQEKDGL-ISFNLKYQGEQNQLLSKLMPLGSIRSFNEK 287
Cdd:COG4586 235 YDGSLEELKERFgPYKTIVLELAEPVPPLeLPRGG------EVIEREGNrVRLEVDPRESLAEVLARLLARYPVRDLTIE 308
|
....*..
gi 312445476 288 IPSMNEV 294
Cdd:COG4586 309 EPPIEEV 315
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
2-228 |
3.73e-29 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 113.70 E-value: 3.73e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEI----LSPHHiKAIGY 77
Cdd:COG1118 3 IEVRNISKRF--GSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDlftnLPPRE-RRVGF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 78 MPEERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIqfvvtVLHR-----PKL 152
Cdd:COG1118 80 VFQHYALFPHMTVAENIAFGLRVRPPSKAEIRARVEELLELVQLEGLADRYPSQLSGGQRQRV-----ALARalavePEV 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 153 LILDEPFSGFDpvnANLIKD------QIinLKNNGTTIILSTHRMESVEEMCDYVALVNHskkildGKVFEVRErfKQNV 226
Cdd:COG1118 155 LLLDEPFGALD---AKVRKElrrwlrRL--HDELGGTTVFVTHDQEEALELADRVVVMNQ------GRIEQVGT--PDEV 221
|
..
gi 312445476 227 YE 228
Cdd:COG1118 222 YD 223
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1-201 |
4.91e-29 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 115.50 E-value: 4.91e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYdAGRKvALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKA-----I 75
Cdd:COG1129 4 LLEMRGISKSF-GGVK-ALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRDaqaagI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 76 GYMPEERGLYKNMTVGDQIlYFGELKG----MSKNEALTQAKYWFERLNIDQWWKKKLSELSkgMAQKiQFVV---TVLH 148
Cdd:COG1129 82 AIIHQELNLVPNLSVAENI-FLGREPRrgglIDWRAMRRRARELLARLGLDIDPDTPVGDLS--VAQQ-QLVEiarALSR 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 312445476 149 RPKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYV 201
Cdd:COG1129 158 DARVLILDEPTASLTEREVERLFRIIRRLKAQGVAIIYISHRLDEVFEIADRV 210
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
3-213 |
6.06e-29 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 109.06 E-value: 6.06e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 3 RAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKA----IGYM 78
Cdd:cd03214 1 EVENLSVGY--GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKElarkIAYV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 79 PeerglyknmtvgdQILyfgelkgmsknealtqakywfERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEP 158
Cdd:cd03214 79 P-------------QAL---------------------ELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEP 124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 312445476 159 FSGFDPVNANLIKDQIINL-KNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDG 213
Cdd:cd03214 125 TSHLDIAHQIELLELLRRLaRERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-206 |
6.99e-29 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 112.88 E-value: 6.99e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILS---PHHiKAIGY 77
Cdd:COG3842 5 ALELENVSKRY--GDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTglpPEK-RNVGM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 78 MPEERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQF---VVTvlhRPKLLI 154
Cdd:COG3842 82 VFQDYALFPHLTVAENVAFGLRMRGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQQRVALaraLAP---EPRVLL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 312445476 155 LDEPFSGFDpvnANLIKDQIINLKN----NGTTIILSTHrmeSVEE---MCDYVALVNH 206
Cdd:COG3842 159 LDEPLSALD---AKLREEMREELRRlqreLGITFIYVTH---DQEEalaLADRIAVMND 211
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
2-208 |
1.03e-28 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 110.02 E-value: 1.03e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILS--PHHIKAIGYMP 79
Cdd:cd03300 1 IELENVSKFY--GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITnlPPHKRPVNTVF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 80 EERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPF 159
Cdd:cd03300 79 QNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 312445476 160 SGFDpvnANLIKDQIINLKN----NGTTIILSTHRMESVEEMCDYVALVNHSK 208
Cdd:cd03300 159 GALD---LKLRKDMQLELKRlqkeLGITFVFVTHDQEEALTMSDRIAVMNKGK 208
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1-218 |
2.79e-28 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 111.32 E-value: 2.79e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGRK--VALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDN-EI--LSPHHI--- 72
Cdd:COG1135 1 MIELENLSKTFPTKGGpvTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGvDLtaLSERELraa 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 73 -KAIGYMPEERGLYKNMTVGDQILYFGELKGMSKNEALTQAKywfERLNI----DqwwKKK--LSELSKGmaQKiQFV-- 143
Cdd:COG1135 81 rRKIGMIFQHFNLLSSRTVAENVALPLEIAGVPKAEIRKRVA---ELLELvglsD---KADayPSQLSGG--QK-QRVgi 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 144 ----VTvlhRPKLLILDEPFSGFDPVNA----NLIKDqiINlKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKV 215
Cdd:COG1135 152 aralAN---NPKVLLCDEATSALDPETTrsilDLLKD--IN-RELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPV 225
|
...
gi 312445476 216 FEV 218
Cdd:COG1135 226 LDV 228
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1-228 |
6.55e-28 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 107.86 E-value: 6.55e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTY--------------------DAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKV 60
Cdd:COG1134 4 MIEVENVSKSYrlyhepsrslkelllrrrrtRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 61 FIDNEILSPhhikaI----GYMPEerglyknMTVGDQILYFGELKGMSKNEalTQAKY----WFERLN--IDQwwkkKLS 130
Cdd:COG1134 84 EVNGRVSAL-----LelgaGFHPE-------LTGRENIYLNGRLLGLSRKE--IDEKFdeivEFAELGdfIDQ----PVK 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 131 ELSKGMAQKIQF-VVTVLhRPKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKK 209
Cdd:COG1134 146 TYSSGMRARLAFaVATAV-DPDILLVDEVLAVGDAAFQKKCLARIRELRESGRTVIFVSHSMGAVRRLCDRAIWLEKGRL 224
|
250
....*....|....*....
gi 312445476 210 ILDGKVFEVRERFKQNVYE 228
Cdd:COG1134 225 VMDGDPEEVIAAYEALLAG 243
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
19-204 |
2.91e-27 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 105.45 E-value: 2.91e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 19 LSDFSIEVPT---GSIYGLLGPNGAGKTSFIRIINQITQADSGKVFID---------NEILSPHHiKAIGYMPEERGLYK 86
Cdd:cd03297 10 LPDFTLKIDFdlnEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNgtvlfdsrkKINLPPQQ-RKIGLVFQQYALFP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 87 NMTVGDQILYfgELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDpvn 166
Cdd:cd03297 89 HLNVRENLAF--GLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALD--- 163
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 312445476 167 aNLIKDQIIN-----LKNNGTTIILSTHRMESVEEMCDYVALV 204
Cdd:cd03297 164 -RALRLQLLPelkqiKKNLNIPVIFVTHDLSEAEYLADRIVVM 205
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
2-208 |
1.37e-26 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 104.34 E-value: 1.37e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIK--AIGYMP 79
Cdd:cd03296 3 IEVRNVSKRF--GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQerNVGFVF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 80 EERGLYKNMTVGDQILYFGELKGMSK--NEALTQAKYwFERLNIDQ--WWKKKL-SELSKGMAQKIQFVVTVLHRPKLLI 154
Cdd:cd03296 81 QHYALFRHMTVFDNVAFGLRVKPRSErpPEAEIRAKV-HELLKLVQldWLADRYpAQLSGGQRQRVALARALAVEPKVLL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 312445476 155 LDEPFSGFDP-VNANL------IKDQIinlknnGTTIILSTHRMESVEEMCDYVALVNHSK 208
Cdd:cd03296 160 LDEPFGALDAkVRKELrrwlrrLHDEL------HVTTVFVTHDQEEALEVADRVVVMNKGR 214
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
2-208 |
1.43e-26 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 103.87 E-value: 1.43e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEI---LSPHHiKAIGYM 78
Cdd:cd03301 1 VELENVTKRF--GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDvtdLPPKD-RDIAMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 79 PEERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEP 158
Cdd:cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 312445476 159 FSGFDpvnANL---IKDQIINL-KNNGTTIILSTHRMESVEEMCDYVALVNHSK 208
Cdd:cd03301 158 LSNLD---AKLrvqMRAELKRLqQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQ 208
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
19-221 |
1.94e-26 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 103.95 E-value: 1.94e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 19 LSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILS--PHHIKAIGYMPEERGLYKNMTVGDQILY 96
Cdd:cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITnlPPEKRDISYVPQNYALFPHMTVYKNIAY 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 97 FGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPvnanLIKDQIIN 176
Cdd:cd03299 95 GLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDV----RTKEKLRE 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 312445476 177 L-----KNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEVRER 221
Cdd:cd03299 171 ElkkirKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-201 |
3.04e-26 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 107.81 E-value: 3.04e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNE---ILSPHH-IKA-I 75
Cdd:COG3845 5 ALELRGITKRF--GGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKpvrIRSPRDaIALgI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 76 GYMPEERGLYKNMTVGDQI-LYFGELKGM--SKNEALTQ-----AKYwfeRLNIDqwWKKKLSELSKGMAQKIQfVVTVL 147
Cdd:COG3845 83 GMVHQHFMLVPNLTVAENIvLGLEPTKGGrlDRKAARARirelsERY---GLDVD--PDAKVEDLSVGEQQRVE-ILKAL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 312445476 148 HR-PKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYV 201
Cdd:COG3845 157 YRgARILILDEPTAVLTPQEADELFEILRRLAAEGKSIIFITHKLREVMAIADRV 211
|
|
| PQQ_ABC_ATP |
TIGR03864 |
ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system; Members of ... |
1-219 |
5.61e-26 |
|
ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system; Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 274822 [Multi-domain] Cd Length: 236 Bit Score: 102.76 E-value: 5.61e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKA---IGY 77
Cdd:TIGR03864 1 ALEVAGLSFRY--GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQSGQISVAGHDLRRAPRAAlarLGV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 78 MPEERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDE 157
Cdd:TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDE 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 312445476 158 PFSGFDPVNANLIKDQIINL-KNNGTTIILSTHRMESVEEMcDYVALVNHSKKILDGKVFEVR 219
Cdd:TIGR03864 159 PTVGLDPASRAAITAHVRALaRDQGLSVLWATHLVDEIEAS-DRLVVLHRGRVLADGAAAELR 220
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
2-215 |
7.24e-26 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 100.20 E-value: 7.24e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDAGrkVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNE---ILSPHHIKAIG-Y 77
Cdd:cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKevsFASPRDARRAGiA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 78 MpeerglyknmtvgdqilyfgelkgmsknealtqakywferlnIDQwwkkklseLSKGMAQKIQFVVTVLHRPKLLILDE 157
Cdd:cd03216 79 M------------------------------------------VYQ--------LSVGERQMVEIARALARNARLLILDE 108
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 312445476 158 PFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVAlvnhskkIL-DGKV 215
Cdd:cd03216 109 PTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVT-------VLrDGRV 160
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
12-213 |
9.21e-26 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 101.84 E-value: 9.21e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 12 DAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIkAIGYMPEerglyknMTVG 91
Cdd:cd03220 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGL-GGGFNPE-------LTGR 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 92 DQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNANLIK 171
Cdd:cd03220 103 ENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQ 182
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 312445476 172 DQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDG 213
Cdd:cd03220 183 RRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
3-201 |
1.49e-25 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 100.79 E-value: 1.49e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 3 RAEHITKTYDAGRKVaLSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPH-HIKAIGYMPEE 81
Cdd:cd03226 1 RIENISFSYKKGTEI-LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKeRRKSIGYVMQD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 82 --RGLYKNmTVGDQILYFGELKGMSKNEALTQAKywfeRLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPF 159
Cdd:cd03226 80 vdYQLFTD-SVREELLLGLKELDAGNEQAETVLK----DLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT 154
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 312445476 160 SGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYV 201
Cdd:cd03226 155 SGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRV 196
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
2-215 |
6.18e-25 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 99.56 E-value: 6.18e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIIN-----QITQADSGKVFIDNEilsphHIKAIG 76
Cdd:cd03260 1 IELRDLNVYY--GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNrlndlIPGAPDEGEVLLDGK-----DIYDLD 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 77 YMPEErgLYK------------NMTVGDQILYFGELKGMSKN--------EALTQAKYWFERLNidqwwKKKLSELSKGM 136
Cdd:cd03260 74 VDVLE--LRRrvgmvfqkpnpfPGSIYDNVAYGLRLHGIKLKeelderveEALRKAALWDEVKD-----RLHALGLSGGQ 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 312445476 137 AQKIQFVVTVLHRPKLLILDEPFSGFDPVNANLIKDQIINLKNNgTTIILSTHRMESVEEMCDYVALVNHSKKILDGKV 215
Cdd:cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPT 224
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
2-201 |
1.09e-24 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 98.76 E-value: 1.09e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHiKAIGYMPEE 81
Cdd:cd03262 1 IEIKNLHKSF--GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDK-KNINELRQK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 82 RG-------LYKNMTVGDQI-LYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLL 153
Cdd:cd03262 78 VGmvfqqfnLFPHLTVLENItLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVM 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 312445476 154 ILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYV 201
Cdd:cd03262 158 LFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRV 205
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
5-224 |
1.16e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 100.51 E-value: 1.16e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 5 EHITKTYDAG---RKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHI------KAI 75
Cdd:PRK13637 6 ENLTHIYMEGtpfEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVklsdirKKV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 76 GYM---PE----ERGLYKNMTVGDQILyfgelkGMSKNEALTQAKYWFERLNIDQWWKKKLS--ELSKGMAQKIQFVVTV 146
Cdd:PRK13637 86 GLVfqyPEyqlfEETIEKDIAFGPINL------GLSEEEIENRVKRAMNIVGLDYEDYKDKSpfELSGGQKRRVAIAGVV 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 312445476 147 LHRPKLLILDEPFSGFDPVNANLIKDQIINL-KNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEVrerFKQ 224
Cdd:PRK13637 160 AMEPKILILDEPTAGLDPKGRDEILNKIKELhKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV---FKE 235
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
5-227 |
5.44e-24 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 102.40 E-value: 5.44e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 5 EHITKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFI---DNEILSPHHIKAIGYMPEE 81
Cdd:TIGR01257 932 KNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVggkDIETNLDAVRQSLGMCPQH 1011
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 82 RGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSG 161
Cdd:TIGR01257 1012 NILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSG 1091
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 312445476 162 FDPVNANLIKDQIINLKnNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEVRERFKQNVY 227
Cdd:TIGR01257 1092 VDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFY 1156
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-215 |
1.32e-23 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 98.61 E-value: 1.32e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSphhikaiGYMPE 80
Cdd:COG3839 3 SLELENVSKSY--GGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVT-------DLPPK 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 81 ERG---------LYKNMTVGDQILyFG-ELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKiqfV------V 144
Cdd:COG3839 74 DRNiamvfqsyaLYPHMTVYENIA-FPlKLRKVPKAEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQR---ValgralV 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 312445476 145 TvlhRPKLLILDEPFSGFDpvnANL---IKDQIINL-KNNGTTIILSTHrmESVEEM--CDYVALVNhskkilDGKV 215
Cdd:COG3839 150 R---EPKVFLLDEPLSNLD---AKLrveMRAEIKRLhRRLGTTTIYVTH--DQVEAMtlADRIAVMN------DGRI 212
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
2-213 |
1.34e-23 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 100.68 E-value: 1.34e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDN---EILSPHHI-KAIGY 77
Cdd:COG2274 474 IELENVSFRYPGDSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGidlRQIDPASLrRQIGV 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 78 MPEE----RG-LYKNMTVGDQILYFGELKgmsknEALTQAkywferlNIDQWWKK-------KLSE----LSKGMAQKIQ 141
Cdd:COG2274 554 VLQDvflfSGtIRENITLGDPDATDEEII-----EAARLA-------GLHDFIEAlpmgydtVVGEggsnLSGGQRQRLA 621
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 312445476 142 FVVTVLHRPKLLILDEPFSGFDPVNANLIKDQIINLKnNGTTIILSTHRMESVeEMCDYVALVNHSKKILDG 213
Cdd:COG2274 622 IARALLRNPRILILDEATSALDAETEAIILENLRRLL-KGRTVIIIAHRLSTI-RLADRIIVLDKGRIVEDG 691
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1-231 |
2.42e-23 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 98.37 E-value: 2.42e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAgrKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILS--PHHIKAIGYM 78
Cdd:PRK11607 19 LLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLShvPPYQRPINMM 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 79 PEERGLYKNMTVgDQILYFGeLK--GMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILD 156
Cdd:PRK11607 97 FQSYALFPHMTV-EQNIAFG-LKqdKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLD 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 157 EPFSGFDPVNANLIKDQIIN-LKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEVRE----RFKQ------N 225
Cdd:PRK11607 175 EPMGALDKKLRDRMQLEVVDiLERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEhpttRYSAefigsvN 254
|
....*.
gi 312445476 226 VYEVVL 231
Cdd:PRK11607 255 VFEGVL 260
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
5-197 |
3.57e-23 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 94.78 E-value: 3.57e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 5 EHITKTYDAGrKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKAIGYMPEERG- 83
Cdd:cd03292 4 INVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGv 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 84 ------LYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDE 157
Cdd:cd03292 83 vfqdfrLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADE 162
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 312445476 158 PFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEM 197
Cdd:cd03292 163 PTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTT 202
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
1-218 |
4.79e-23 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 96.79 E-value: 4.79e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGRK--VALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNE---ILSPHHIKA- 74
Cdd:PRK11153 1 MIELKNISKVFPQGGRtiHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQdltALSEKELRKa 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 75 ---IGYMPEERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPK 151
Cdd:PRK11153 81 rrqIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 312445476 152 LLILDEPFSGFDPVNAN----LIKDqiINlKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEV 218
Cdd:PRK11153 161 VLLCDEATSALDPATTRsileLLKD--IN-RELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEV 228
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
2-199 |
8.10e-23 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 93.00 E-value: 8.10e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDAGRKVA----LSDFSIEVPTGSIYGLLGPNGAGKTSFIRIIN--QITQADSGKVFIDNEILSPHHIKA- 74
Cdd:cd03213 4 LSFRNLTVTVKSSPSKSgkqlLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAgrRTGLGVSGEVLINGRPLDKRSFRKi 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 75 IGYMPEERGLYKNMTVGDQILYFGELKGMSKNEaltqakywferlnidqwwKKKLSelskgmaqkiqFVVTVLHRPKLLI 154
Cdd:cd03213 84 IGYVPQDDILHPTLTVRETLMFAAKLRGLSGGE------------------RKRVS-----------IALELVSNPSLLF 134
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 312445476 155 LDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHR-MESVEEMCD 199
Cdd:cd03213 135 LDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQpSSEIFELFD 180
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1-213 |
1.18e-22 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 93.89 E-value: 1.18e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNE-I--LSPHHI--KAI 75
Cdd:COG0410 3 MLEVENLHAGY--GGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEdItgLPPHRIarLGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 76 GYMPEERGLYKNMTVGDQILYFGELKGMSKNEALTQAK-Y-WFERLnidqwwKKKLS----ELSKG-----------MAq 138
Cdd:COG0410 81 GYVPEGRRIFPSLTVEENLLLGAYARRDRAEVRADLERvYeLFPRL------KERRRqragTLSGGeqqmlaigralMS- 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 312445476 139 kiqfvvtvlhRPKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDG 213
Cdd:COG0410 154 ----------RPKLLLLDEPSLGLAPLIVEEIFEIIRRLNREGVTILLVEQNARFALEIADRAYVLERGRIVLEG 218
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-202 |
2.61e-22 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 94.35 E-value: 2.61e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGRKV--ALSDFSIEVPTGSIYGLLGPNGAGKTSFIRII------NQITqadSGKVFIDNE---ILSP 69
Cdd:COG0444 1 LLEVRNLKVYFPTRRGVvkAVDGVSFDVRRGETLGLVGESGSGKSTLARAIlgllppPGIT---SGEILFDGEdllKLSE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 70 HHIKAIgympeeRG-------------LykN--MTVGDQIlyfGEL----KGMSKNEALTQAKYWFERLNIDQWwKKKLS 130
Cdd:COG0444 78 KELRKI------RGreiqmifqdpmtsL--NpvMTVGDQI---AEPlrihGGLSKAEARERAIELLERVGLPDP-ERRLD 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 131 ----ELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVnanlIKDQIINL-----KNNGTTIILSTHRMESVEEMCDYV 201
Cdd:COG0444 146 ryphELSGGMRQRVMIARALALEPKLLIADEPTTALDVT----IQAQILNLlkdlqRELGLAILFITHDLGVVAEIADRV 221
|
.
gi 312445476 202 A 202
Cdd:COG0444 222 A 222
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1-216 |
1.29e-21 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 91.30 E-value: 1.29e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIIN-QITQADSGKVFIDNEIL---SPHHIKA-I 75
Cdd:COG1119 3 LLELRNVTVRR--GGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITgDLPPTYGNDVRLFGERRggeDVWELRKrI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 76 GYM-PE-ERGLYKNMTVGDQIL--YFGELkGMSKN---EALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLH 148
Cdd:COG1119 81 GLVsPAlQLRFPRDETVLDVVLsgFFDSI-GLYREptdEQRERARELLELLGLAHLADRPFGTLSQGEQRRVLIARALVK 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 312445476 149 RPKLLILDEPFSGFDPVNANLIKDQIINL-KNNGTTIILSTHRmesVEEMcdyVALVNHSKKILDGKVF 216
Cdd:COG1119 160 DPELLILDEPTAGLDLGARELLLALLDKLaAEGAPTLVLVTHH---VEEI---PPGITHVLLLKDGRVV 222
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
2-215 |
1.37e-21 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 89.20 E-value: 1.37e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKA----IGY 77
Cdd:cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNElgdhVGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 78 MPEERGLYKNmTVGDQIlyfgelkgmsknealtqakywferlnidqwwkkklseLSKGMAQKIQFVVTVLHRPKLLILDE 157
Cdd:cd03246 81 LPQDDELFSG-SIAENI-------------------------------------LSGGQRQRLGLARALYGNPRILVLDE 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 312445476 158 PFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVeEMCDYVALVNhskkilDGKV 215
Cdd:cd03246 123 PNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL-ASADRILVLE------DGRV 173
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
14-189 |
3.27e-21 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 88.63 E-value: 3.27e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 14 GRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEilsphhikAIGYmpEERGLYK-NMTVG- 91
Cdd:TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGE--------PLDY--SRKGLLErRQRVGl 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 92 ------DQILY--------FGELK-GMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILD 156
Cdd:TIGR01166 73 vfqdpdDQLFAadvdqdvaFGPLNlGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLD 152
|
170 180 190
....*....|....*....|....*....|...
gi 312445476 157 EPFSGFDPVNANLIKDQIINLKNNGTTIILSTH 189
Cdd:TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTH 185
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
1-218 |
6.04e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 90.14 E-value: 6.04e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGrKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEilsphhikAIGYmpE 80
Cdd:PRK13639 1 ILETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGE--------PIKY--D 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 81 ERGLYK-NMTVG-------DQI--------LYFGELK-GMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFV 143
Cdd:PRK13639 70 KKSLLEvRKTVGivfqnpdDQLfaptveedVAFGPLNlGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIA 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 312445476 144 VTVLHRPKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEV 218
Cdd:PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
18-219 |
5.29e-20 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 86.97 E-value: 5.29e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 18 ALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEI---LSPHHIKAIGYMP--EERGLYKNMTVGD 92
Cdd:PRK11300 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHiegLPGHQIARMGVVRtfQHVRLFREMTVIE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 93 QILY-------FGELKGM--------SKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDE 157
Cdd:PRK11300 100 NLLVaqhqqlkTGLFSGLlktpafrrAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDE 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 312445476 158 PFSGFDPVNANLIKDQIINLKNN-GTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEVR 219
Cdd:PRK11300 180 PAAGLNPKETKELDELIAELRNEhNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIR 242
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
1-204 |
7.13e-20 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 90.07 E-value: 7.13e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIIN---QITQADS---GKVFIDNeiLSPHHiKA 74
Cdd:TIGR01257 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTgdtTVTSGDAtvaGKSILTN--ISDVH-QN 2013
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 75 IGYMPEERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLI 154
Cdd:TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVL 2093
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 312445476 155 LDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALV 204
Cdd:TIGR01257 2094 LDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIM 2143
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-214 |
1.95e-19 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 88.06 E-value: 1.95e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGRkvALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADS--GKVFIDNEILSPHHIK----- 73
Cdd:PRK13549 5 LLEMKNITKTFGGVK--ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTyeGEIIFEGEELQASNIRdtera 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 74 AIGYMPEERGLYKNMTVGDQILYFGEL-KG--MSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRP 150
Cdd:PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEItPGgiMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 312445476 151 KLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALvnhskkILDGK 214
Cdd:PRK13549 163 RLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICV------IRDGR 220
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1-218 |
2.22e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 86.05 E-value: 2.22e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGRKvALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEilsPHHIKAIGYMPE 80
Cdd:PRK13636 5 ILKVEELNYNYSDGTH-ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGK---PIDYSRKGLMKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 81 ERGLYKNMTVGDQILY---------FGELK-GMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRP 150
Cdd:PRK13636 81 RESVGMVFQDPDNQLFsasvyqdvsFGAVNlKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 312445476 151 KLLILDEPFSGFDPVNANLIKDQIINL-KNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEV 218
Cdd:PRK13636 161 KVLVLDEPTAGLDPMGVSEIMKLLVEMqKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 229
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
16-228 |
4.05e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 84.71 E-value: 4.05e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 16 KVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEIL----------SPHHIKAIGYMPEERGLY 85
Cdd:PRK14246 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLyfgkdifqidAIKLRKEVGMVFQQPNPF 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 86 KNMTVGDQILYFGELKGMSKN--------EALTQAKYW---FERLNidqwwkKKLSELSKGMAQKIQFVVTVLHRPKLLI 154
Cdd:PRK14246 103 PHLSIYDNIAYPLKSHGIKEKreikkiveECLRKVGLWkevYDRLN------SPASQLSGGQQQRLTIARALALKPKVLL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 312445476 155 LDEPFSGFDPVNANLIKDQIINLKNNgTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEVRERFKQNVYE 228
Cdd:PRK14246 177 MDEPTSMIDIVNSQAIEKLITELKNE-IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTE 249
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-206 |
6.30e-19 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 84.01 E-value: 6.30e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKvfidneILSPHHIKaIGYMPE 80
Cdd:PRK09544 4 LVSLENVSVSF--GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGV------IKRNGKLR-IGYVPQ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 81 ErgLYKNMTVGDQILYFGELKGMSKNEALTQAkywFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFS 160
Cdd:PRK09544 75 K--LYLDTTLPLTVNRFLRLRPGTKKEDILPA---LKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 312445476 161 GFDpVNANL-IKDQIINLKNN-GTTIILSTHRMESVEEMCDYVALVNH 206
Cdd:PRK09544 150 GVD-VNGQVaLYDLIDQLRRElDCAVLMVSHDLHLVMAKTDEVLCLNH 196
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
5-221 |
7.25e-19 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 83.43 E-value: 7.25e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 5 EHITKTYDAGRKVaLSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKA----IGYMPE 80
Cdd:cd03254 6 ENVNFSYDEKKPV-LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSlrsmIGVVLQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 81 ERGLYkNMTVGDQILYFGELKGMSK-NEALTQAK--YWFERL--NIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLIL 155
Cdd:cd03254 85 DTFLF-SGTIMENIRLGRPNATDEEvIEAAKEAGahDFIMKLpnGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILIL 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 312445476 156 DEPFSGFDPVNANLIKDQIINLKNNGTTIILStHRMESVEEmCDYVALVNHSKKILDGKVFEVRER 221
Cdd:cd03254 164 DEATSNIDTETEKLIQEALEKLMKGRTSIIIA-HRLSTIKN-ADKILVLDDGKIIEEGTHDELLAK 227
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
2-201 |
1.15e-18 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 85.73 E-value: 1.15e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDAGRkvALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEilsPHHIK-------- 73
Cdd:PRK11288 5 LSFDGIGKTFPGVK--ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQ---EMRFAsttaalaa 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 74 --AIGYmpEERGLYKNMTVGDQiLYFGELK---GMSKNEAL-TQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVL 147
Cdd:PRK11288 80 gvAIIY--QELHLVPEMTVAEN-LYLGQLPhkgGIVNRRLLnYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALA 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 312445476 148 HRPKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYV 201
Cdd:PRK11288 157 RNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAI 210
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1-202 |
1.18e-18 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 85.84 E-value: 1.18e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITktydagRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNE---ILSPHH-IKA-I 75
Cdd:COG1129 256 VLEVEGLS------VGGVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKpvrIRSPRDaIRAgI 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 76 GYMPEER---GLYKNMTVGDQIL-----YFGELKGMSKNEALTQAKYWFERLNI-----DQwwkkKLSELSKGMAQKIqf 142
Cdd:COG1129 330 AYVPEDRkgeGLVLDLSIRENITlasldRLSRGGLLDRRRERALAEEYIKRLRIktpspEQ----PVGNLSGGNQQKV-- 403
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 312445476 143 vvtVL-----HRPKLLILDEPFSGFDpVNAnliKDQI---IN-LKNNGTTIILSTHRMESVEEMCDYVA 202
Cdd:COG1129 404 ---VLakwlaTDPKVLILDEPTRGID-VGA---KAEIyrlIReLAAEGKAVIVISSELPELLGLSDRIL 465
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
2-192 |
1.68e-18 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 82.75 E-value: 1.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDN---EILSPHHIKAIGYM 78
Cdd:PRK11124 3 IQLNGINCFY--GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGnhfDFSKTPSDKAIREL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 79 PEERG-------LYKNMTVGDQILyfgE----LKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVL 147
Cdd:PRK11124 81 RRNVGmvfqqynLWPHLTVQQNLI---EapcrVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALM 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 312445476 148 HRPKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRME 192
Cdd:PRK11124 158 MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE 202
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
6-245 |
2.47e-18 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 84.00 E-value: 2.47e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 6 HITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHI--KAIGYMPEERG 83
Cdd:PRK11432 11 NITKRF--GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIqqRDICMVFQSYA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 84 LYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFD 163
Cdd:PRK11432 89 LFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLD 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 164 pvnANL---IKDQIINLKNN-GTTIILSTHRMESVEEMCDYVALVNhskkilDGKVFEVRErfKQNVYEvvlaHSNSELL 239
Cdd:PRK11432 169 ---ANLrrsMREKIRELQQQfNITSLYVTHDQSEAFAVSDTVIVMN------KGKIMQIGS--PQELYR----QPASRFM 233
|
....*.
gi 312445476 240 ENFKSE 245
Cdd:PRK11432 234 ASFMGD 239
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
7-221 |
2.50e-18 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 84.23 E-value: 2.50e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 7 ITKTYDAgrKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSphHIKaigymPEER---- 82
Cdd:PRK09452 20 ISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIT--HVP-----AENRhvnt 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 83 -----GLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDE 157
Cdd:PRK09452 91 vfqsyALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 312445476 158 PFSGFDpvnANLIKDQIINLK----NNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEVRER 221
Cdd:PRK09452 171 SLSALD---YKLRKQMQNELKalqrKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
14-234 |
2.73e-18 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 84.02 E-value: 2.73e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 14 GRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIrIINQITQADSGKV---FIDNEILSPHHIKAIG-YMPEERGLYKNMT 89
Cdd:NF000106 24 GEVKAVDGVDLDVREGTVLGVLGP*GAA**RGA-LPAHV*GPDAGRRpwrF*TWCANRRALRRTIG*HRPVR*GRRESFS 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 90 VGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNANL 169
Cdd:NF000106 103 GRENLYMIGR*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNE 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 312445476 170 IKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEVRERFKQNVYEVVLAHS 234
Cdd:NF000106 183 VWDEVRSMVRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKTKVGGRTLQIRPAHA 247
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1-158 |
3.30e-18 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 84.35 E-value: 3.30e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDaGRKVaLSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIdneilsPHHIKaIGYMPE 80
Cdd:COG0488 315 VLELEGLSKSYG-DKTL-LDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL------GETVK-IGYFDQ 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 81 ER-GLYKNMTVgdqilyFGELKGMSKNEALTQAKYWFERLNI--DQWWkKKLSELSKGMAQKIQFVVTVLHRPKLLILDE 157
Cdd:COG0488 386 HQeELDPDKTV------LDELRDGAPGGTEQEVRGYLGRFLFsgDDAF-KPVGVLSGGEKARLALAKLLLSPPNVLLLDE 458
|
.
gi 312445476 158 P 158
Cdd:COG0488 459 P 459
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1-218 |
5.06e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 81.96 E-value: 5.06e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHI----KAIG 76
Cdd:PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLkeirKKIG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 77 YM---PEERglYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLL 153
Cdd:PRK13632 87 IIfqnPDNQ--FIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEII 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 312445476 154 ILDEPFSGFDPVNANLIKDQIINLKNNGT-TIILSTHRMESVeEMCDYVALVNHSKKILDGKVFEV 218
Cdd:PRK13632 165 IFDESTSMLDPKGKREIKKIMVDLRKTRKkTLISITHDMDEA-ILADKVIVFSEGKLIAQGKPKEI 229
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
2-218 |
5.26e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 82.44 E-value: 5.26e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDAGRKV---ALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKV------------------ 60
Cdd:PRK13651 3 IKVKNIVKIFNKKLPTelkALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIewifkdeknkkktkekek 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 61 FIDNEILSPHHIKAIGYMPE------------ERGLYKNMTVGDQIlyFGELK-GMSKNEALTQAKYWFERLNIDQ-WWK 126
Cdd:PRK13651 83 VLEKLVIQKTRFKKIKKIKEirrrvgvvfqfaEYQLFEQTIEKDII--FGPVSmGVSKEEAKKRAAKYIELVGLDEsYLQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 127 KKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNH 206
Cdd:PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD 240
|
250
....*....|..
gi 312445476 207 SKKILDGKVFEV 218
Cdd:PRK13651 241 GKIIKDGDTYDI 252
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
2-206 |
6.15e-18 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 83.68 E-value: 6.15e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDAGRKVaLSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDN-EI--LSPHHI-KAIGY 77
Cdd:COG1132 340 IEFENVSFSYPGDRPV-LKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGvDIrdLTLESLrRQIGV 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 78 MPEERGLYkNMTVGDQILYF------GELKgmsknEALTQAkywferlNIDQW---WKKKL--------SELSKGMAQKI 140
Cdd:COG1132 419 VPQDTFLF-SGTIRENIRYGrpdatdEEVE-----EAAKAA-------QAHEFieaLPDGYdtvvgergVNLSGGQRQRI 485
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 312445476 141 QFVVTVLHRPKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILStHRMESVeEMCDYVALVNH 206
Cdd:COG1132 486 AIARALLKDPPILILDEATSALDTETEALIQEALERLMKGRTTIVIA-HRLSTI-RNADRILVLDD 549
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
4-212 |
7.24e-18 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 83.64 E-value: 7.24e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 4 AEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHI---KAIGYMPE 80
Cdd:NF033858 269 ARGLTMRF--GDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDAGDIatrRRVGYMSQ 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 81 ERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFS 160
Cdd:NF033858 347 AFSLYGELTVRQNLELHARLFHLPAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTS 426
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 312445476 161 GFDPVNANLIKDQIINL-KNNGTTIILSTHRM-ESveEMCDYVALVnHSKKILD 212
Cdd:NF033858 427 GVDPVARDMFWRLLIELsREDGVTIFISTHFMnEA--ERCDRISLM-HAGRVLA 477
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
1-204 |
7.51e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 81.70 E-value: 7.51e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGRKVA---LSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSP-------- 69
Cdd:PRK13643 1 MIKFEKVNYTYQPNSPFAsraLFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSStskqkeik 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 70 ---HHIKAIGYMPEERgLYKNMTVGDqiLYFGELK-GMSKNEALTQAKYWFERLNID-QWWKKKLSELSKGMAQKIQFVV 144
Cdd:PRK13643 81 pvrKKVGVVFQFPESQ-LFEETVLKD--VAFGPQNfGIPKEKAEKIAAEKLEMVGLAdEFWEKSPFELSGGQMRRVAIAG 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 145 TVLHRPKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALV 204
Cdd:PRK13643 158 ILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLL 217
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
1-206 |
1.08e-17 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 79.01 E-value: 1.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITktydagRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNE---ILSPHH-IKA-I 75
Cdd:cd03215 4 VLEVRGLS------VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKpvtRRSPRDaIRAgI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 76 GYMPEER---GLYKNMTVGDqilyfgelkgmskNEALTqakywferlnidqwwkkklSELSKGMAQKIqfVVT--VLHRP 150
Cdd:cd03215 78 AYVPEDRkreGLVLDLSVAE-------------NIALS-------------------SLLSGGNQQKV--VLArwLARDP 123
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 312445476 151 KLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNH 206
Cdd:cd03215 124 RVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYE 179
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
1-218 |
1.15e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 81.82 E-value: 1.15e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGRK---VALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHI----- 72
Cdd:PRK13631 21 ILRVKNLYCVFDEKQEnelVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNnheli 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 73 ---------------KAIGYM---PEERgLYKNmTVGDQILyFGELK-GMSKNEALTQAKYWFERLNIDQ-WWKKKLSEL 132
Cdd:PRK13631 101 tnpyskkiknfkelrRRVSMVfqfPEYQ-LFKD-TIEKDIM-FGPVAlGVKKSEAKKLAKFYLNKMGLDDsYLERSPFGL 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 133 SKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILD 212
Cdd:PRK13631 178 SGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKT 257
|
....*.
gi 312445476 213 GKVFEV 218
Cdd:PRK13631 258 GTPYEI 263
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1-218 |
1.38e-17 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 82.54 E-value: 1.38e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTY---DAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKV-------FIDNEILSPH 70
Cdd:TIGR03269 279 IIKVRNVSKRYisvDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVnvrvgdeWVDMTKPGPD 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 71 H----IKAIGYMPEERGLYKNMTVGDQI-----LYF-GELKGMSKNEALTQAKywFERLNIDQWWKKKLSELSKGMAQKI 140
Cdd:TIGR03269 359 GrgraKRYIGILHQEYDLYPHRTVLDNLteaigLELpDELARMKAVITLKMVG--FDEEKAEEILDKYPDELSEGERHRV 436
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 312445476 141 QFVVTVLHRPKLLILDEPFSGFDPVNANLIKDQIINLKNN-GTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEV 218
Cdd:TIGR03269 437 ALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEmEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1-210 |
1.83e-17 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 82.18 E-value: 1.83e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGRkvALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADS--GKVFIDNEILSPHHI-----K 73
Cdd:TIGR02633 1 LLEMKGIVKTFGGVK--ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTwdGEIYWSGSPLKASNIrdterA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 74 AIGYMPEERGLYKNMTVGDQILYFGE--LKG--MSKNEALTQAKYWFERLNIDQW-WKKKLSELSKGMAQKIQFVVTVLH 148
Cdd:TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEitLPGgrMAYNAMYLRAKNLLRELQLDADnVTRPVGDYGGGQQQLVEIAKALNK 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 312445476 149 RPKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKI 210
Cdd:TIGR02633 159 QARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
7-204 |
2.20e-17 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 80.31 E-value: 2.20e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 7 ITKTYDAGRkVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFI----DNEILSPHhikAIGYMP--E 80
Cdd:PRK15056 12 VTVTWRNGH-TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISIlgqpTRQALQKN---LVAYVPqsE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 81 ERGLYKNMTVGDQILY--FGELKGMSKNEALTQAKY--WFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILD 156
Cdd:PRK15056 88 EVDWSFPVLVEDVVMMgrYGHMGWLRRAKKRDRQIVtaALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLD 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 312445476 157 EPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALV 204
Cdd:PRK15056 168 EPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV 215
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
5-213 |
5.70e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 79.01 E-value: 5.70e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 5 EHITKTYDAGRKvALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKAIGYM------ 78
Cdd:PRK13647 8 EDLHFRYKDGTK-ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKvglvfq 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 79 -PEERGLykNMTVGDQILyFGELK-GMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILD 156
Cdd:PRK13647 87 dPDDQVF--SSTVWDDVA-FGPVNmGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLD 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 312445476 157 EPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDG 213
Cdd:PRK13647 164 EPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-158 |
7.87e-17 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 80.49 E-value: 7.87e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 4 AEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEIlsphhikAIGYMPEERG 83
Cdd:COG0488 1 LENLSKSF--GGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPKGL-------RIGYLPQEPP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 84 LYKNMTVGDQILY-FGELKGMSKNEALTQAKYWF-----ERLN--------IDQW-------------------WKKKLS 130
Cdd:COG0488 72 LDDDLTVLDTVLDgDAELRALEAELEELEAKLAEpdedlERLAelqeefeaLGGWeaearaeeilsglgfpeedLDRPVS 151
|
170 180
....*....|....*....|....*...
gi 312445476 131 ELSKGMAQKIQFVVTVLHRPKLLILDEP 158
Cdd:COG0488 152 ELSGGWRRRVALARALLSEPDLLLLDEP 179
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
3-221 |
8.60e-17 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 80.55 E-value: 8.60e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 3 RAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFI------RIINQitqadsGKVFI-DNEILSPHHIKA- 74
Cdd:NF033858 3 RLEGVSHRY--GKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLsliagaRKIQQ------GRVEVlGGDMADARHRRAv 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 75 ---IGYMPEERG--LYKNMTVGDQILYFGELKGMSKNE------ALTQA------------Kywferlnidqwwkkklse 131
Cdd:NF033858 75 cprIAYMPQGLGknLYPTLSVFENLDFFGRLFGQDAAErrrridELLRAtglapfadrpagK------------------ 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 132 LSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNAN----LIKDqiINLKNNGTTIILSTHRMESVEEmCDYVALVNHS 207
Cdd:NF033858 137 LSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLSRRqfweLIDR--IRAERPGMSVLVATAYMEEAER-FDWLVAMDAG 213
|
250
....*....|....
gi 312445476 208 KKILDGKVFEVRER 221
Cdd:NF033858 214 RVLATGTPAELLAR 227
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
2-205 |
1.01e-16 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 80.08 E-value: 1.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDN--------EILSPHhik 73
Cdd:TIGR01842 317 LSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGadlkqwdrETFGKH--- 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 74 aIGYMPEERGLYKNmTVGDQILYFGELKGMSK-NEALTQAKYWFERLNIDQWWKKKLSE----LSKGMAQKIQFVVTVLH 148
Cdd:TIGR01842 394 -IGYLPQDVELFPG-TVAENIARFGENADPEKiIEAAKLAGVHELILRLPDGYDTVIGPggatLSGGQRQRIALARALYG 471
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 312445476 149 RPKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMeSVEEMCDYVALVN 205
Cdd:TIGR01842 472 DPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRP-SLLGCVDKILVLQ 527
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
19-213 |
1.22e-16 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 77.31 E-value: 1.22e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 19 LSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQAD---SGKVFIDNEILSPHHI-KAIGYMPEERGLYKNMTVGDQI 94
Cdd:cd03234 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGgttSGQILFNGQPRKPDQFqKCVAYVRQDDILLPGLTVRETL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 95 LYFGELK-GMSKNEALTQAKYWFERLN---IDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNANLI 170
Cdd:cd03234 103 TYTAILRlPRKSSDAIRKKRVEDVLLRdlaLTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNL 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 312445476 171 KDQIINLKNNGTTIILSTHRMES-VEEMCDYVALVNHSKKILDG 213
Cdd:cd03234 183 VSTLSQLARRNRIVILTIHQPRSdLFRLFDRILLLSSGEIVYSG 226
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
14-218 |
1.46e-16 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 79.31 E-value: 1.46e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 14 GRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFID--------NEILSPHHIKAIGYMPEERGLY 85
Cdd:PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDgvdiakisDAELREVRRKKIAMVFQSFALM 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 86 KNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPV 165
Cdd:PRK10070 119 PHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPL 198
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 312445476 166 NANLIKDQIINLK-NNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEV 218
Cdd:PRK10070 199 IRTEMQDELVKLQaKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
5-211 |
1.73e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 77.75 E-value: 1.73e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 5 EHITKTYDAG---RKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPH----HIKAI-- 75
Cdd:PRK13634 6 QKVEHRYQYKtpfERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGkknkKLKPLrk 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 76 --GYM---PEERgLYKNmTVGDQILyFGELK-GMSKNEALTQAKYWFERLNIDQwwkKKLS----ELSKGMAQKIQFVVT 145
Cdd:PRK13634 86 kvGIVfqfPEHQ-LFEE-TVEKDIC-FGPMNfGVSEEDAKQKAREMIELVGLPE---ELLArspfELSGGQMRRVAIAGV 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 312445476 146 VLHRPKLLILDEPFSGFDPVNANLIKDQIINL-KNNGTTIILSTHRMESVEEMCDYVaLVNHSKKIL 211
Cdd:PRK13634 160 LAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLhKEKGLTTVLVTHSMEDAARYADQI-VVMHKGTVF 225
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1-229 |
2.05e-16 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 76.98 E-value: 2.05e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEIL---SPHHI-KAIG 76
Cdd:PRK11231 2 TLRTENLTVGY--GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPIsmlSSRQLaRRLA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 77 YMPEERGLYKNMTVGDQILY--------FGELKGmsKNEAL-TQAkywFERLNIDQWWKKKLSELSKGMAQKIQFVVTVL 147
Cdd:PRK11231 80 LLPQHHLTPEGITVRELVAYgrspwlslWGRLSA--EDNARvNQA---MEQTRINHLADRRLTDLSGGQRQRAFLAMVLA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 148 HRPKLLILDEPFSGFDpVN--ANLIKdQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEV-RERFKQ 224
Cdd:PRK11231 155 QDTPVVLLDEPTTYLD-INhqVELMR-LMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVmTPGLLR 232
|
....*
gi 312445476 225 NVYEV 229
Cdd:PRK11231 233 TVFDV 237
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
5-214 |
2.58e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 77.09 E-value: 2.58e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 5 EHITKTYDAGRKV---ALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPH----HIKAIG- 76
Cdd:PRK13649 6 QNVSYTYQAGTPFegrALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTsknkDIKQIRk 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 77 ------YMPE----ERGLYKNMTVGDQILyfgelkGMSKNEALTQAKywfERLNI----DQWWKKKLSELSKGMAQKIQF 142
Cdd:PRK13649 86 kvglvfQFPEsqlfEETVLKDVAFGPQNF------GVSQEEAEALAR---EKLALvgisESLFEKNPFELSGGQMRRVAI 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 312445476 143 VVTVLHRPKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGK 214
Cdd:PRK13649 157 AGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
1-213 |
3.49e-16 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 76.28 E-value: 3.49e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDN-EILSPH-HIKAI--- 75
Cdd:PRK09493 1 MIEFKNVSKHF--GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGlKVNDPKvDERLIrqe 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 76 -GYMPEERGLYKNMTVGDQILyFGELK--GMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKL 152
Cdd:PRK09493 79 aGMVFQQFYLFPHLTALENVM-FGPLRvrGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 312445476 153 LILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDG 213
Cdd:PRK09493 158 MLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDG 218
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
2-229 |
3.57e-16 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 78.31 E-value: 3.57e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDAgrKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQ--ADSGKV-----------FID----- 63
Cdd:TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQyePTSGRIiyhvalcekcgYVErpskv 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 64 -------NEILSPHHIKAIGYMPEER---------------GLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNI 121
Cdd:TIGR03269 79 gepcpvcGGTLEPEEVDFWNLSDKLRrrirkriaimlqrtfALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 122 DQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNANLIKDQIINL-KNNGTTIILSTHRMESVEEMCDY 200
Cdd:TIGR03269 159 SHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAvKASGISMVLTSHWPEVIEDLSDK 238
|
250 260
....*....|....*....|....*....
gi 312445476 201 VALVNHSKKILDGKVFEVRERFKQNVYEV 229
Cdd:TIGR03269 239 AIWLENGEIKEEGTPDEVVAVFMEGVSEV 267
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
16-225 |
3.74e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 76.79 E-value: 3.74e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 16 KVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPH----HIKAI------GYMPEERGLY 85
Cdd:PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPEtgnkNLKKLrkkvslVFQFPEAQLF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 86 KNMTVGDqiLYFGELK-GMSKNEALTQAKYWFERLNI-DQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFD 163
Cdd:PRK13641 100 ENTVLKD--VEFGPKNfGFSEDEAKEKALKWLKKVGLsEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLD 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 312445476 164 PVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDG---KVFEVRERFKQN 225
Cdd:PRK13641 178 PEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHAspkEIFSDKEWLKKH 242
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
2-215 |
4.12e-16 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 78.25 E-value: 4.12e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDN--------EILSPHhik 73
Cdd:COG4618 331 LSVENLTVVPPGSKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGadlsqwdrEELGRH--- 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 74 aIGYMPEERGLYkNMTVGDQILYFGELKGmsknEALTQA------KYWFERLNidQWWKKKLSE----LSKGMAQKIQFV 143
Cdd:COG4618 408 -IGYLPQDVELF-DGTIAENIARFGDADP----EKVVAAaklagvHEMILRLP--DGYDTRIGEggarLSGGQRQRIGLA 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 144 VTVLHRPKLLILDEPfsgfdpvNANLikDQ---------IINLKNNGTTIILSTHRMeSVEEMCDYVALVNhskkilDGK 214
Cdd:COG4618 480 RALYGDPRLVVLDEP-------NSNL--DDegeaalaaaIRALKARGATVVVITHRP-SLLAAVDKLLVLR------DGR 543
|
.
gi 312445476 215 V 215
Cdd:COG4618 544 V 544
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
1-215 |
4.16e-16 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 75.95 E-value: 4.16e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDagrkVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPhhikaigYMPE 80
Cdd:COG3840 1 MLRLDDLTYRYG----DFPLRFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTA-------LPPA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 81 ERG---------LYKNMTVGDQIlYFGELKGMSKNEA----LTQAkywFERLNIDQWWKKKLSELSKGMAQKIQFV-VTV 146
Cdd:COG3840 70 ERPvsmlfqennLFPHLTVAQNI-GLGLRPGLKLTAEqraqVEQA---LERVGLAGLLDRLPGQLSGGQRQRVALArCLV 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 312445476 147 LHRPkLLILDEPFSGFDPVnanlIKDQIINL-----KNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKV 215
Cdd:COG3840 146 RKRP-ILLLDEPFSALDPA----LRQEMLDLvdelcRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPT 214
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
14-220 |
5.15e-16 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 76.34 E-value: 5.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 14 GRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNE---ILSPHHI----KAIGYMPEERGLYK 86
Cdd:PRK11831 18 GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGEnipAMSRSRLytvrKRMSMLFQSGALFT 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 87 NMTVGDQILY-FGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPV 165
Cdd:PRK11831 98 DMNVFDNVAYpLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPI 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 312445476 166 NANLIKDQIINLKNN-GTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEVRE 220
Cdd:PRK11831 178 TMGVLVKLISELNSAlGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-192 |
5.56e-16 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 75.89 E-value: 5.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGR---KVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNeilsphhiKAIGY 77
Cdd:COG1101 1 MLELKNLSKTFNPGTvneKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDG--------KDVTK 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 78 MPEER--------------GLYKNMTVGDQiLYFGELKGMSKN--EALTQAKYWF-------------ERLNIdqwwkkK 128
Cdd:COG1101 73 LPEYKrakyigrvfqdpmmGTAPSMTIEEN-LALAYRRGKRRGlrRGLTKKRRELfrellatlglgleNRLDT------K 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 312445476 129 LSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNANLI---KDQIINlKNNGTTIILsTHRME 192
Cdd:COG1101 146 VGLLSGGQRQALSLLMATLTKPKLLLLDEHTAALDPKTAALVlelTEKIVE-ENNLTTLMV-THNME 210
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
5-194 |
7.99e-16 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 74.96 E-value: 7.99e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 5 EHITKTYDAGRKVaLSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHI----KAIGYMPE 80
Cdd:cd03253 4 ENVTFAYDPGRPV-LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLdslrRAIGVVPQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 81 ERGLYkNMTVGDQILYfGELKGMSKN--EALTQAKYWFERLNIDQWWKKKLSE----LSKGMAQKIQFVVTVLHRPKLLI 154
Cdd:cd03253 83 DTVLF-NDTIGYNIRY-GRPDATDEEviEAAKAAQIHDKIMRFPDGYDTIVGErglkLSGGEKQRVAIARAILKNPPILL 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 312445476 155 LDEPFSGFDPVNANLIKDQIINLKNNGTTIILsTHRMESV 194
Cdd:cd03253 161 LDEATSALDTHTEREIQAALRDVSKGRTTIVI-AHRLSTI 199
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
5-224 |
1.32e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 75.22 E-value: 1.32e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 5 EHITKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADS---GKVFIDNEILSPhhiKAIGYMPEE 81
Cdd:PRK13640 9 KHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDnpnSKITVDGITLTA---KTVWDIREK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 82 RGL-YKN-------MTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLL 153
Cdd:PRK13640 86 VGIvFQNpdnqfvgATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKII 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 312445476 154 ILDEPFSGFDPVNANLIKDQIINLKN-NGTTIILSTHRMESVeEMCDYVALVNHSKKILDG---KVFEVRERFKQ 224
Cdd:PRK13640 166 ILDESTSMLDPAGKEQILKLIRKLKKkNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGspvEIFSKVEMLKE 239
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
5-206 |
1.53e-15 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 75.89 E-value: 1.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 5 EHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIK--AIGYMPEER 82
Cdd:PRK10851 6 ANIKKSF--GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARdrKVGFVFQHY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 83 GLYKNMTVGDQILyFGeLKGMSK----NEALTQAKY--WFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILD 156
Cdd:PRK10851 84 ALFRHMTVFDNIA-FG-LTVLPRrerpNAAAIKAKVtqLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLD 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 312445476 157 EPFSGFDPVNANLIKDQIINLKNN-GTTIILSTHRMESVEEMCDYVALVNH 206
Cdd:PRK10851 162 EPFGALDAQVRKELRRWLRQLHEElKFTSVFVTHDQEEAMEVADRVVVMSQ 212
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
14-228 |
2.92e-15 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 73.79 E-value: 2.92e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 14 GRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQ-----ADSGKVFIDNE-------ILSPHHIKAIGYMPE- 80
Cdd:PRK14247 14 GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIElypeaRVSGEVYLDGQdifkmdvIELRRRVQMVFQIPNp 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 81 --ERGLYKNMTVGDQILYF----GELKGMSKnEALTQAKYWFE---RLNidqwwkKKLSELSKGMAQKIQFVVTVLHRPK 151
Cdd:PRK14247 94 ipNLSIFENVALGLKLNRLvkskKELQERVR-WALEKAQLWDEvkdRLD------APAGKLSGGQQQRLCIARALAFQPE 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 312445476 152 LLILDEPFSGFDPVNANLIKDQIINLKNNgTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEVRERFKQNVYE 228
Cdd:PRK14247 167 VLLADEPTANLDPENTAKIESLFLELKKD-MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPRHELTE 242
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
1-164 |
5.37e-15 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 72.13 E-value: 5.37e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQAD---SGKVFIDNEILS--PHHIKAI 75
Cdd:COG4136 1 MLSLENLTITL--GGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAfsaSGEVLLNGRRLTalPAEQRRI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 76 GYMPEERGLYKNMTVGDQILyFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLIL 155
Cdd:COG4136 79 GILFQDDLLFPHLSVGENLA-FALPPTIGRAQRRARVEQALEEAGLAGFADRDPATLSGGQRARVALLRALLAEPRALLL 157
|
....*....
gi 312445476 156 DEPFSGFDP 164
Cdd:COG4136 158 DEPFSKLDA 166
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
2-205 |
5.38e-15 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 73.28 E-value: 5.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQIT------QADsGKVFIDNEILSPHHIKA- 74
Cdd:PRK14243 11 LRTENLNVYY--GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNdlipgfRVE-GKVTFHGKNLYAPDVDPv 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 75 -----IGYM-----PEERGLYKNMTVGDQIL-YFGELKGMSKnEALTQAKYWFERlnidqwwKKKLSE----LSKGMAQK 139
Cdd:PRK14243 88 evrrrIGMVfqkpnPFPKSIYDNIAYGARINgYKGDMDELVE-RSLRQAALWDEV-------KDKLKQsglsLSGGQQQR 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 312445476 140 IQFVVTVLHRPKLLILDEPFSGFDPVNANLIKDQIINLKNNgTTIILSTHRMESVEEMCDYVALVN 205
Cdd:PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVTHNMQQAARVSDMTAFFN 224
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
2-224 |
5.78e-15 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 73.51 E-value: 5.78e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHI----KAIGY 77
Cdd:PRK13635 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVwdvrRQVGM 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 78 M---PEERglYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLI 154
Cdd:PRK13635 86 VfqnPDNQ--FVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIII 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 312445476 155 LDEPFSGFDPVNANLIKDQIINLKNNGTTIILS-THRMESVEEmCDYVALVNHSKKILDG---KVFEVRERFKQ 224
Cdd:PRK13635 164 LDEATSMLDPRGRREVLETVRQLKEQKGITVLSiTHDLDEAAQ-ADRVIVMNKGEILEEGtpeEIFKSGHMLQE 236
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
18-206 |
6.51e-15 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 71.73 E-value: 6.51e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 18 ALSDFSIEVPTGSIYGLLGPNGAGKTSFIR-IINQItQADSGKVfidneilspHHIKAIGYMPEERGLYkNMTVGDQILy 96
Cdd:cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSaLLGEL-EKLSGSV---------SVPGSIAYVSQEPWIQ-NGTIRENIL- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 97 FGElkgmsknealtqaKYWFERLN-----------IDQWWKKKLSE-------LSKGMAQKIQFVVTVLHRPKLLILDEP 158
Cdd:cd03250 88 FGK-------------PFDEERYEkvikacalepdLEILPDGDLTEigekginLSGGQKQRISLARAVYSDADIYLLDDP 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 312445476 159 FSGFDP-VNANLIKDQIINLKNNGTTIILSTHRMESVEEmCDYVALVNH 206
Cdd:cd03250 155 LSAVDAhVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDN 202
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
21-213 |
6.57e-15 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 72.14 E-value: 6.57e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 21 DFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFID--NEILSPHHIKAIGYMPEERGLYKNMTVgDQILYFG 98
Cdd:cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINgvDVTAAPPADRPVSMLFQENNLFAHLTV-EQNVGLG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 99 ELKGMSKNEALTQA-KYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNANLIKDQIINL 177
Cdd:cd03298 95 LSPGLKLTAEDRQAiEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDL 174
|
170 180 190
....*....|....*....|....*....|....*..
gi 312445476 178 -KNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDG 213
Cdd:cd03298 175 hAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
14-199 |
6.63e-15 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 73.79 E-value: 6.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 14 GRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQaDSGKVFID----NEI----LSPHHIKAIgyMPEE---- 81
Cdd:COG4170 18 GRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITK-DNWHVTADrfrwNGIdllkLSPRERRKI--IGREiami 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 82 -----RGLYKNMTVGDQI---LYFGELKGM---SKNEALTQAKYWFERLNIDQWwKKKLS----ELSKGMAQKIQFVVTV 146
Cdd:COG4170 95 fqepsSCLDPSAKIGDQLieaIPSWTFKGKwwqRFKWRKKRAIELLHRVGIKDH-KDIMNsyphELTEGECQKVMIAMAI 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 312445476 147 LHRPKLLILDEPFSGFDPVNanliKDQIINL-----KNNGTTIILSTHRMESVEEMCD 199
Cdd:COG4170 174 ANQPRLLIADEPTNAMESTT----QAQIFRLlarlnQLQGTSILLISHDLESISQWAD 227
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
14-217 |
7.50e-15 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 72.57 E-value: 7.50e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 14 GRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQAD-----SGKVF-----IDNEILSPHHI-KAIGYMPEER 82
Cdd:PRK14267 15 GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNeearvEGEVRlfgrnIYSPDVDPIEVrREVGMVFQYP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 83 GLYKNMTVGDQILYFGELKGMSKNE---------ALTQAKYWFE---RLNidqwwkKKLSELSKGMAQKIQFVVTVLHRP 150
Cdd:PRK14267 95 NPFPHLTIYDNVAIGVKLNGLVKSKkeldervewALKKAALWDEvkdRLN------DYPSNLSGGQRQRLVIARALAMKP 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 151 KLLILDEPFSGFDPVNANLIKDQIINLKNNgTTIILSTHRMESVEEMCDYVALVNHSKKILDG---KVFE 217
Cdd:PRK14267 169 KILLMDEPTANIDPVGTAKIEELLFELKKE-YTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGptrKVFE 237
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-214 |
8.34e-15 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 74.32 E-value: 8.34e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGRKVALSDFSIEvpTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEI---LSPHHIKAIG- 76
Cdd:PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLH--AGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPcarLTPAKAHQLGi 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 77 YM-PEERGLYKNMTVGDQILyFGELKGMSKNEALTQAkywFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLIL 155
Cdd:PRK15439 89 YLvPQEPLLFPNLSVKENIL-FGLPKRQASMQKMKQL---LAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILIL 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 312445476 156 DEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGK 214
Cdd:PRK15439 165 DEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGK 223
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
1-224 |
8.53e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 72.81 E-value: 8.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAG----RKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNeiLSPHHIKAIG 76
Cdd:PRK13633 4 MIKCKNVSYKYESNeestEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDG--LDTSDEENLW 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 77 YMPEERGL-YKN------MTVGDQILYFG-ELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLH 148
Cdd:PRK13633 82 DIRNKAGMvFQNpdnqivATIVEEDVAFGpENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAM 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 312445476 149 RPKLLILDEPFSGFDPVNANLIKDQIINL-KNNGTTIILSTHRMESVEEmCDYVALVNHSKKILDGKvfeVRERFKQ 224
Cdd:PRK13633 162 RPECIIFDEPTAMLDPSGRREVVNTIKELnKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGT---PKEIFKE 234
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
6-218 |
1.66e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 72.14 E-value: 1.66e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 6 HITKTYD-----AGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKAIgympe 80
Cdd:PRK13652 2 HLIETRDlcysySGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREV----- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 81 erglykNMTVG-------DQI--------LYFGELK-GMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVV 144
Cdd:PRK13652 77 ------RKFVGlvfqnpdDQIfsptveqdIAFGPINlGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAG 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 312445476 145 TVLHRPKLLILDEPFSGFDPVNANLIKDQIINL-KNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEV 218
Cdd:PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLpETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
29-214 |
1.85e-14 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 73.38 E-value: 1.85e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 29 GSIYGLLGPNGAGKTSFIRIINQITQADS--GKVFIDNEILSPHHIKAIGYMPEERGLYKNMTVGDQILYFGEL---KGM 103
Cdd:PLN03211 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNftGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLrlpKSL 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 104 SKNEALTQAKYWFERLNIDQWWKKKLSE-----LSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNANLIKDQIINLK 178
Cdd:PLN03211 174 TKQEKILVAESVISELGLTKCENTIIGNsfirgISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLA 253
|
170 180 190
....*....|....*....|....*....|....*..
gi 312445476 179 NNGTTIILSTHRMES-VEEMCDYVALVNHSKKILDGK 214
Cdd:PLN03211 254 QKGKTIVTSMHQPSSrVYQMFDSVLVLSEGRCLFFGK 290
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
2-217 |
2.21e-14 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 71.11 E-value: 2.21e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKA----IGY 77
Cdd:cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASlrrqIGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 78 MPEERGLYkNMTVGDQILYFGELKGMSKNEALTQAKYWFERL-NIDQWWKKKLSE----LSKGMAQKIQFVVTVLHRPKL 152
Cdd:cd03251 81 VSQDVFLF-NDTVAENIAYGRPGATREEVEEAARAANAHEFImELPEGYDTVIGErgvkLSGGQRQRIAIARALLKDPPI 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 312445476 153 LILDEPFSGFDPVNANLIKDQIINLKNNGTTIILStHRMESVEemcdyvalvnHSKKIL---DGKVFE 217
Cdd:cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIA-HRLSTIE----------NADRIVvleDGKIVE 216
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
4-192 |
2.34e-14 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 70.76 E-value: 2.34e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 4 AEHITKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIR-IINQIT-QADSGKVFIDNEILSPhhikaigympee 81
Cdd:COG2401 31 LEAFGVELRVVERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRlLAGALKgTPVAGCVDVPDNQFGR------------ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 82 rglykNMTVGDQILYFGELKgmSKNEALTQAKywferLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSG 161
Cdd:COG2401 99 -----EASLIDAIGRKGDFK--DAVELLNAVG-----LSDAVLWLRRFKELSTGQKFRFRLALLLAERPKLLVIDEFCSH 166
|
170 180 190
....*....|....*....|....*....|..
gi 312445476 162 FDPVNANLIKDQIINL-KNNGTTIILSTHRME 192
Cdd:COG2401 167 LDRQTAKRVARNLQKLaRRAGITLVVATHHYD 198
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1-213 |
2.47e-14 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 71.58 E-value: 2.47e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGRKVALSDFSIEvpTGSIYGLLGPNGAGKTSFIRIINQITQADS----------------GKVFIDN 64
Cdd:PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIH--HGEMVALLGPSGSGKSTLLRHLSGLITGDKsagshiellgrtvqreGRLARDI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 65 EILSPHhikaIGYMPEERGLYKNMTVGDQIL---------------YFGELKGMSKNEALTqakywfeRLNIDQWWKKKL 129
Cdd:PRK09984 82 RKSRAN----TGYIFQQFNLVNRLSVLENVLigalgstpfwrtcfsWFTREQKQRALQALT-------RVGMVHFAHQRV 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 130 SELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNANLIKDQIINL-KNNGTTIILSTHRMESVEEMCDYVALVNHSK 208
Cdd:PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDInQNDGITVVVTLHQVDYALRYCERIVALRQGH 230
|
....*
gi 312445476 209 KILDG 213
Cdd:PRK09984 231 VFYDG 235
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
14-218 |
3.20e-14 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 70.96 E-value: 3.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 14 GRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQAD-----SGKV-FIDNEILSPHH-----IKAIGYMPEER 82
Cdd:PRK14239 16 NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNpevtiTGSIvYNGHNIYSPRTdtvdlRKEIGMVFQQP 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 83 GLYKnMTVGDQILYFGELKGMSKNE--------ALTQAKYWFERlnidqwwKKKLSE----LSKGMAQKIQFVVTVLHRP 150
Cdd:PRK14239 96 NPFP-MSIYENVVYGLRLKGIKDKQvldeavekSLKGASIWDEV-------KDRLHDsalgLSGGQQQRVCIARVLATSP 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 312445476 151 KLLILDEPFSGFDPVNANLIKDQIINLKNNgTTIILSTHRMESVEEMCDYVALvnhskkILDGKVFEV 218
Cdd:PRK14239 168 KIILLDEPTSALDPISAGKIEETLLGLKDD-YTMLLVTRSMQQASRISDRTGF------FLDGDLIEY 228
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-203 |
5.27e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 70.45 E-value: 5.27e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDAGRkvALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADS-----GKVFIDNEILSPHHI---- 72
Cdd:PRK14258 8 IKVNNLSFYYDTQK--ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESevrveGRVEFFNQNIYERRVnlnr 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 73 --KAIGYMPEERGLYKnMTVGDQILYFGELKGMSKN--------EALTQAKYWFErlnIDQWWKKKLSELSKGMAQKIQF 142
Cdd:PRK14258 86 lrRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKleiddiveSALKDADLWDE---IKHKIHKSALDLSGGQQQRLCI 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 312445476 143 VVTVLHRPKLLILDEPFSGFDPVNANLIKDQIINLK-NNGTTIILSTHRMESVEEMCDYVAL 203
Cdd:PRK14258 162 ARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRlRSELTMVIVSHNLHQVSRLSDFTAF 223
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
5-194 |
5.48e-14 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 69.82 E-value: 5.48e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 5 EHITKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNE---ILSPHHIKA-IGYMPE 80
Cdd:cd03252 4 EHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHdlaLADPAWLRRqVGVVLQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 81 ERGLYkNMTVGDQILYFGElkGMSKNEALTQAK------YWFE-RLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLL 153
Cdd:cd03252 84 ENVLF-NRSIRDNIALADP--GMSMERVIEAAKlagahdFISElPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 312445476 154 ILDEPFSGFDPVNANLIkdqIINLKN--NGTTIILSTHRMESV 194
Cdd:cd03252 161 IFDEATSALDYESEHAI---MRNMHDicAGRTVIIIAHRLSTV 200
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
19-194 |
6.76e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 70.53 E-value: 6.76e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 19 LSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSP-------HHIKAIGYMPEERglYKNMTVG 91
Cdd:PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEenvwdirHKIGMVFQNPDNQ--FVGATVE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 92 DQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVN-ANLI 170
Cdd:PRK13650 101 DDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGrLELI 180
|
170 180
....*....|....*....|....*
gi 312445476 171 KdQIINLK-NNGTTIILSTHRMESV 194
Cdd:PRK13650 181 K-TIKGIRdDYQMTVISITHDLDEV 204
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-218 |
7.93e-14 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 69.68 E-value: 7.93e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITqaD-------SGKVFIDNE-ILSP---- 69
Cdd:COG1117 12 IEVRNLNVYY--GDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMN--DlipgarvEGEILLDGEdIYDPdvdv 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 70 -HHIKAIGY---MPeerglykN---MTVGDQILYFGELKGM-SKNE-------ALTQAKYWFE---RLnidqwwKKKLSE 131
Cdd:COG1117 88 vELRRRVGMvfqKP-------NpfpKSIYDNVAYGLRLHGIkSKSEldeiveeSLRKAALWDEvkdRL------KKSALG 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 132 LSKGMAQK--IQFVVTVlhRPKLLILDEPFSGFDPVNANLIKDQIINLKNNgTTIILSTHRMESVEEMCDYVALvnhskk 209
Cdd:COG1117 155 LSGGQQQRlcIARALAV--EPEVLLMDEPTSALDPISTAKIEELILELKKD-YTIVIVTHNMQQAARVSDYTAF------ 225
|
....*....
gi 312445476 210 ILDGKVFEV 218
Cdd:COG1117 226 FYLGELVEF 234
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
19-228 |
8.53e-14 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 69.42 E-value: 8.53e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 19 LSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFID-NEILSPHhikaigymPEERGLYKN------MTVG 91
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEgKQITEPG--------PDRMVVFQNysllpwLTVR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 92 DQI-LYFGE-LKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNANL 169
Cdd:TIGR01184 73 ENIaLAVDRvLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGN 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 312445476 170 IKDQIINL-KNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEV---RERFKQNVYE 228
Cdd:TIGR01184 153 LQEELMQIwEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVpfpRPRDRLEVVE 215
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
2-213 |
9.72e-14 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 68.11 E-value: 9.72e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNeilspHHIKAIgympeE 81
Cdd:cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDG-----VPVSDL-----E 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 82 RGLYKNMTVgdqilyfgelkgmskneaLTQAKYWFE---RLNIDQwwkkklsELSKGMAQKIQFVVTVLHRPKLLILDEP 158
Cdd:cd03247 71 KALSSLISV------------------LNQRPYLFDttlRNNLGR-------RFSGGERQRLALARILLQDAPIVLLDEP 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 312445476 159 FSGFDPVNANLIKDQIIN-LKNNgtTIILSTHRMESVEEMcDYVALVNHSKKILDG 213
Cdd:cd03247 126 TVGLDPITERQLLSLIFEvLKDK--TLIWITHHLTGIEHM-DKILFLENGKIIMQG 178
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-218 |
1.45e-13 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 70.58 E-value: 1.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILS--PHHIKA---I 75
Cdd:PRK09700 5 YISMAGIGKSF--GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNklDHKLAAqlgI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 76 GYMPEERGLYKNMTVGDQiLYFGEL---KGMSKN-----EALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVL 147
Cdd:PRK09700 83 GIIYQELSVIDELTVLEN-LYIGRHltkKVCGVNiidwrEMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLM 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 312445476 148 HRPKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEV 218
Cdd:PRK09700 162 LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
18-210 |
1.66e-13 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 70.53 E-value: 1.66e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 18 ALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIK-----AIGYMPEERGLYKNMTVGD 92
Cdd:PRK10982 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKealenGISMVHQELNLVLQRSVMD 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 93 QiLYFGE--LKGM--SKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNAN 168
Cdd:PRK10982 93 N-MWLGRypTKGMfvDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVN 171
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 312445476 169 LIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKI 210
Cdd:PRK10982 172 HLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
1-192 |
1.80e-13 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 68.96 E-value: 1.80e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAgrKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNE-ILSPHHIKAIGYMP 79
Cdd:PRK11248 1 MLQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKpVEGPGAERGVVFQN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 80 EerGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPF 159
Cdd:PRK11248 79 E--GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF 156
|
170 180 190
....*....|....*....|....*....|....
gi 312445476 160 SGFDPVNANLIKDQIINL-KNNGTTIILSTHRME 192
Cdd:PRK11248 157 GALDAFTREQMQTLLLKLwQETGKQVLLITHDIE 190
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
7-158 |
1.92e-13 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 70.22 E-value: 1.92e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 7 ITKTYDagrkvalsDFSIEVPTGSIY-----GLLGPNGAGKTSFIRIINQITQADSGKVFIDneilsphhIKaIGYMPEE 81
Cdd:PRK13409 346 LTKKLG--------DFSLEVEGGEIYegeviGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE--------LK-ISYKPQY 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 82 RGLYKNMTVGDQIlyfgelkgMSKNEALTQAKYWFE---RLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEP 158
Cdd:PRK13409 409 IKPDYDGTVEDLL--------RSITDDLGSSYYKSEiikPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEP 480
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
1-205 |
3.81e-13 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 67.91 E-value: 3.81e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAG-------RKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILS---PH 70
Cdd:TIGR02769 2 LLEVRDVTHTYRTGglfgakqRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYqldRK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 71 HIKAIG------YMPEERGLYKNMTVGDQIlyfGE----LKGMSKNEALTQAKYWFERLNIDQWWKKKL-SELSKGMAQK 139
Cdd:TIGR02769 82 QRRAFRrdvqlvFQDSPSAVNPRMTVRQII---GEplrhLTSLDESEQKARIAELLDMVGLRSEDADKLpRQLSGGQLQR 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 312445476 140 IQFVVTVLHRPKLLILDEPFSGFDPVNANLIKDQIINLKNN-GTTIILSTHRMESVEEMCDYVALVN 205
Cdd:TIGR02769 159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAfGTAYLFITHDLRLVQSFCQRVAVMD 225
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
19-210 |
4.31e-13 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 69.26 E-value: 4.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 19 LSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIK-----AIGYMPEER---GLYKNMTV 90
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQdglanGIVYISEDRkrdGLVLGMSV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 91 GDQ-----ILYFGELKGMSKNEALTQAKYWFERL-NI-----DQwwkkKLSELSKGMAQKIQFVVTVLHRPKLLILDEPF 159
Cdd:PRK10762 348 KENmsltaLRYFSRAGGSLKHADEQQAVSDFIRLfNIktpsmEQ----AIGLLSGGNQQKVAIARGLMTRPKVLILDEPT 423
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 312445476 160 SGFDpVNANLIKDQIIN-LKNNGTTIILSTHRMESVEEMCDYVaLVNHSKKI 210
Cdd:PRK10762 424 RGVD-VGAKKEIYQLINqFKAEGLSIILVSSEMPEVLGMSDRI-LVMHEGRI 473
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
19-204 |
5.09e-13 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 68.71 E-value: 5.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 19 LSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKAIG----YMPEERGLYKNMTVgDQI 94
Cdd:PRK09536 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASrrvaSVPQDTSLSFEFDV-RQV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 95 LYFGELKGMSKNEALTQA-----KYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNANL 169
Cdd:PRK09536 98 VEMGRTPHRSRFDTWTETdraavERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVR 177
|
170 180 190
....*....|....*....|....*....|....*
gi 312445476 170 IKDQIINLKNNGTTIILSTHRMESVEEMCDYVALV 204
Cdd:PRK09536 178 TLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLL 212
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
14-208 |
6.34e-13 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 67.30 E-value: 6.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 14 GRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNE-------------ILSPHHIKAI----G 76
Cdd:PRK10619 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQtinlvrdkdgqlkVADKNQLRLLrtrlT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 77 YMPEERGLYKNMTVGDQILYFG-ELKGMSKNEALTQAKYWFERLNIDQWWKKKL-SELSKGMAQKIQFVVTVLHRPKLLI 154
Cdd:PRK10619 96 MVFQHFNLWSHMTVLENVMEAPiQVLGLSKQEARERAVKYLAKVGIDERAQGKYpVHLSGGQQQRVSIARALAMEPEVLL 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 312445476 155 LDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSK 208
Cdd:PRK10619 176 FDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229
|
|
| DUF4162 |
pfam13732 |
Domain of unknown function (DUF4162); This domain is found at the C-terminus of bacterial ABC ... |
213-299 |
7.96e-13 |
|
Domain of unknown function (DUF4162); This domain is found at the C-terminus of bacterial ABC transporter proteins. The function is not known.
Pssm-ID: 463971 [Multi-domain] Cd Length: 82 Bit Score: 63.00 E-value: 7.96e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 213 GKVFEVRERFKQNVYEVVLAHSNSELLENFKSEFspsdwQEKDGLISFNLKYQGEQNQLLSKLMPLGSIRSFNEKIPSMN 292
Cdd:pfam13732 1 GTLEEIKRSYGRNRIEVETADAEELLELPGVEEV-----EEEGGGLELKLEDEEAANELLAALLSGGEIRSFEEEEPSLN 75
|
....*..
gi 312445476 293 EVFITAV 299
Cdd:pfam13732 76 DIFIEKV 82
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
19-189 |
8.65e-13 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 65.66 E-value: 8.65e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 19 LSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKAIGYMPEERGLYKNMTVGDQILYFG 98
Cdd:PRK13541 16 LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 99 ELkgMSKNEALTQAKYWFErlnIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNANLIKDQIINLK 178
Cdd:PRK13541 96 EI--YNSAETLYAAIHYFK---LHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKA 170
|
170
....*....|.
gi 312445476 179 NNGTTIILSTH 189
Cdd:PRK13541 171 NSGGIVLLSSH 181
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
10-201 |
8.84e-13 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 65.63 E-value: 8.84e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 10 TYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRII--NQITQADSGKVFIDNEI---LSPHHIKAIG------YM 78
Cdd:cd03217 7 HVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTImgHPKYEVTEGEILFKGEDitdLPPEERARLGiflafqYP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 79 PEERGLyknmTVGDQILYFGElkGMSKNEaltqakywferlnidqwwkKKLSELSKGMAQKiqfvvtvlhrPKLLILDEP 158
Cdd:cd03217 87 PEIPGV----KNADFLRYVNE--GFSGGE-------------------KKRNEILQLLLLE----------PDLAILDEP 131
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 312445476 159 FSGFDPVNANLIKDQIINLKNNGTTIILSTHRmesvEEMCDYV 201
Cdd:cd03217 132 DSGLDIDALRLVAEVINKLREEGKSVLIITHY----QRLLDYI 170
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-186 |
1.17e-12 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 66.06 E-value: 1.17e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHI-----KAI 75
Cdd:PRK11614 5 MLSFDKVSAHY--GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTakimrEAV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 76 GYMPEERGLYKNMTVGDQILYFGELKGMSKNEALTQAKY-WFERLNidQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLI 154
Cdd:PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYeLFPRLH--ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLL 160
|
170 180 190
....*....|....*....|....*....|..
gi 312445476 155 LDEPFSGFDPVNANLIKDQIINLKNNGTTIIL 186
Cdd:PRK11614 161 LDEPSLGLAPIIIQQIFDTIEQLREQGMTIFL 192
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
2-158 |
1.63e-12 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 67.65 E-value: 1.63e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEIlsphhikAIGYMPEE 81
Cdd:TIGR03719 323 IEAENLTKAF--GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEIGETV-------KLAYVDQS 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 82 R-GLYKNMTVGDQILyfGELKGMSKNEALTQAKYWFERLNI---DQwwKKKLSELSKGMAQKIQFVVTVLHRPKLLILDE 157
Cdd:TIGR03719 394 RdALDPNKTVWEEIS--GGLDIIKLGKREIPSRAYVGRFNFkgsDQ--QKKVGQLSGGERNRVHLAKTLKSGGNVLLLDE 469
|
.
gi 312445476 158 P 158
Cdd:TIGR03719 470 P 470
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
9-201 |
1.89e-12 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 66.67 E-value: 1.89e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 9 KTYDaGRKVALSDFSIEVPTGSIYGLLGPNGAGK--TSFIrIINQItqADSGKV-----FIDNEILS-PHhiKAIGYMPE 80
Cdd:PRK09473 23 STPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKsqTAFA-LMGLL--AANGRIggsatFNGREILNlPE--KELNKLRA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 81 ER----------GLYKNMTVGDQILYFGEL-KGMSKNEALTQAKYWFERLNIDQWwKKKLS----ELSKGMAQKIQFVVT 145
Cdd:PRK09473 97 EQismifqdpmtSLNPYMRVGEQLMEVLMLhKGMSKAEAFEESVRMLDAVKMPEA-RKRMKmyphEFSGGMRQRVMIAMA 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 312445476 146 VLHRPKLLILDEPFSGFD-PVNAnlikdQIINLKNN-----GTTIILSTHRMESVEEMCDYV 201
Cdd:PRK09473 176 LLCRPKLLIADEPTTALDvTVQA-----QIMTLLNElkrefNTAIIMITHDLGVVAGICDKV 232
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1-164 |
2.10e-12 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 65.56 E-value: 2.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITktYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEIL---SPHHI-KAIG 76
Cdd:PRK13548 2 MLEARNLS--VRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLadwSPAELaRRRA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 77 YMPEERGLYKNMTVGDQI---LYFGELkGMSKNEALTQAkyWFERLNIDQWWKKKLSELSKGMAQKIQF--VVTVLHR-- 149
Cdd:PRK13548 80 VLPQHSSLSFPFTVEEVVamgRAPHGL-SRAEDDALVAA--ALAQVDLAHLAGRDYPQLSGGEQQRVQLarVLAQLWEpd 156
|
170
....*....|....*..
gi 312445476 150 --PKLLILDEPFSGFDP 164
Cdd:PRK13548 157 gpPRWLLLDEPTSALDL 173
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
19-210 |
2.67e-12 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 65.25 E-value: 2.67e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 19 LSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILS----PHHIKAIGYMPEERGLYkNMTVGDQI 94
Cdd:cd03249 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRdlnlRWLRSQIGLVSQEPVLF-DGTIAENI 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 95 LYfgelkgmSKN--------EALTQAkywferlNIDQWWKK-----------KLSELSKGMAQKIQFVVTVLHRPKLLIL 155
Cdd:cd03249 98 RY-------GKPdatdeeveEAAKKA-------NIHDFIMSlpdgydtlvgeRGSQLSGGQKQRIAIARALLRNPKILLL 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 312445476 156 DEPFSGFDPVNANLIKDQIINLKNNGTTIILStHRMESVEEmCDYVALVNHSKKI 210
Cdd:cd03249 164 DEATSALDAESEKLVQEALDRAMKGRTTIVIA-HRLSTIRN-ADLIAVLQNGQVV 216
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
2-189 |
3.06e-12 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 62.85 E-value: 3.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDAgrKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGkvfidnEILSPHHIKaIGYMPee 81
Cdd:cd03221 1 IELENLSKTYGG--KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG------IVTWGSTVK-IGYFE-- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 82 rglyknmtvgdqilyfgelkgmsknealtqakywferlnidqwwkkklsELSKGMAQKIQFVVTVLHRPKLLILDEPFSG 161
Cdd:cd03221 70 -------------------------------------------------QLSGGEKMRLALAKLLLENPNLLLLDEPTNH 100
|
170 180
....*....|....*....|....*...
gi 312445476 162 FDPVNANLIKDQIINLKNngtTIILSTH 189
Cdd:cd03221 101 LDLESIEALEEALKEYPG---TVILVSH 125
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1-213 |
3.41e-12 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 65.16 E-value: 3.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDaGRKVaLSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFI-DNEILSPHHIKA----- 74
Cdd:PRK11264 3 AIEVKNLVKKFH-GQTV-LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVgDITIDTARSLSQqkgli 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 75 ------IGYMPEERGLYKNMTVGDQILYfGEL--KGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTV 146
Cdd:PRK11264 81 rqlrqhVGFVFQNFNLFPHRTVLENIIE-GPVivKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARAL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 312445476 147 LHRPKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDG 213
Cdd:PRK11264 160 AMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
16-217 |
5.13e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 64.73 E-value: 5.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 16 KVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHI----------KAIGYM-----PE 80
Cdd:PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIfnyrdvlefrRRVGMLfqrpnPF 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 81 ERGLYKNMTVG---DQILYFGELKGMSKNEaLTQAKYWferlnidQWWKKKLSE----LSKGMAQKIQFVVTVLHRPKLL 153
Cdd:PRK14271 114 PMSIMDNVLAGvraHKLVPRKEFRGVAQAR-LTEVGLW-------DAVKDRLSDspfrLSGGQQQLLCLARTLAVNPEVL 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 312445476 154 ILDEPFSGFDPVNANLIKDQIINLKNNgTTIILSTHRMESVEEMCDYVALvnhskkILDGKVFE 217
Cdd:PRK14271 186 LLDEPTSALDPTTTEKIEEFIRSLADR-LTVIIVTHNLAQAARISDRAAL------FFDGRLVE 242
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
19-227 |
5.64e-12 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 65.90 E-value: 5.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 19 LSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSP--HHI--KAIGYMPEERGLYkNMTVGDQI 94
Cdd:TIGR00958 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQydHHYlhRQVALVGQEPVLF-SGSVRENI 575
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 95 LYfgELKGMSKNEALTQAKYWFERLNI-------DQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDP-VN 166
Cdd:TIGR00958 576 AY--GLTDTPDEEIMAAAKAANAHDFImefpngyDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAeCE 653
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 312445476 167 ANLIKDQiinlKNNGTTIILSTHRMESVEEmCDYVALVNHSKKILDGKVFEVRERfkQNVY 227
Cdd:TIGR00958 654 QLLQESR----SRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMED--QGCY 707
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
19-202 |
5.82e-12 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 64.35 E-value: 5.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 19 LSDFSIEVPTGSIY-----GLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSphhikaigYMPEERGLYKNMTVgDQ 93
Cdd:cd03237 10 LGEFTLEVEGGSISeseviGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS--------YKPQYIKADYEGTV-RD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 94 ILyfgelkgMSKNEALTQAKYW----FERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPfSGFDPVNANL 169
Cdd:cd03237 81 LL-------SSITKDFYTHPYFkteiAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEP-SAYLDVEQRL 152
|
170 180 190
....*....|....*....|....*....|....*....
gi 312445476 170 IKDQIIN---LKNNGTTIIlsthrmesVEE---MCDYVA 202
Cdd:cd03237 153 MASKVIRrfaENNEKTAFV--------VEHdiiMIDYLA 183
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
18-294 |
5.87e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 65.03 E-value: 5.87e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 18 ALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILsPHHIKAIGYMPE------------ERGLY 85
Cdd:PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAI-PANLKKIKEVKRlrkeiglvfqfpEYQLF 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 86 KNMTVGDqiLYFGELK-GMSKNEALTQAKYWFERLNI-DQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFD 163
Cdd:PRK13645 105 QETIEKD--IAFGPVNlGENKQEAYKKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLD 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 164 PVNanliKDQIINL-----KNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEVrerfkqnvyevvlaHSNSEL 238
Cdd:PRK13645 183 PKG----EEDFINLferlnKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI--------------FSNQEL 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 312445476 239 LENFKSEfSPSDWQekdglISFNLKYQGeqNQLLSKlmplgSIRSFNEKIPSMNEV 294
Cdd:PRK13645 245 LTKIEID-PPKLYQ-----LMYKLKNKG--IDLLNK-----NIRTIEEFAKELAKV 287
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
1-64 |
6.36e-12 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 64.33 E-value: 6.36e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 312445476 1 MLRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDN 64
Cdd:COG4604 1 MIEIKNVSKRY--GGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDG 62
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
16-190 |
7.04e-12 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 62.56 E-value: 7.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 16 KVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVfidneilsphhikaigYMPEERGL-------YknM 88
Cdd:cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI----------------GMPEGEDLlflpqrpY--L 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 89 TVG---DQILYFgelkgmsknealtqakywferlnidqwWKKKLSElskGMAQKIQFVVTVLHRPKLLILDEPFSGFDPV 165
Cdd:cd03223 76 PLGtlrEQLIYP---------------------------WDDVLSG---GEQQRLAFARLLLHKPKFVFLDEATSALDEE 125
|
170 180
....*....|....*....|....*
gi 312445476 166 NANLIKDQiinLKNNGTTIILSTHR 190
Cdd:cd03223 126 SEDRLYQL---LKELGITVISVGHR 147
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
20-210 |
1.99e-11 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 64.30 E-value: 1.99e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 20 SDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKA-----IGYMPEER---GLYKN---- 87
Cdd:PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQrlargLVYLPEDRqssGLYLDapla 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 88 -----MTVGDQILYFGElkgmsKNEALTqakywFER----LNIdqwwkkKLSE-------LSKGMAQKIQFVVTVLHRPK 151
Cdd:PRK15439 360 wnvcaLTHNRRGFWIKP-----ARENAV-----LERyrraLNI------KFNHaeqaartLSGGNQQKVLIAKCLEASPQ 423
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 312445476 152 LLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVaLVNHSKKI 210
Cdd:PRK15439 424 LLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRV-LVMHQGEI 481
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
19-195 |
2.10e-11 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 62.49 E-value: 2.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 19 LSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHH-------IKAIGYMPE--ERGLYKNMT 89
Cdd:cd03248 30 LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEhkylhskVSLVGQEPVlfARSLQDNIA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 90 VGDQILYFGELK------GMSKNEALTQAKYWFErlnIDQwwkkKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFD 163
Cdd:cd03248 110 YGLQSCSFECVKeaaqkaHAHSFISELASGYDTE---VGE----KGSQLSGGQKQRVAIARALIRNPQVLILDEATSALD 182
|
170 180 190
....*....|....*....|....*....|..
gi 312445476 164 pVNANLIKDQIINLKNNGTTIILSTHRMESVE 195
Cdd:cd03248 183 -AESEQQVQQALYDWPERRTVLVIAHRLSTVE 213
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
2-186 |
2.31e-11 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 63.89 E-value: 2.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITkTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKA-----IG 76
Cdd:COG3845 258 LEVENLS-VRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRErrrlgVA 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 77 YMPEER---GLYKNMTVGDQIL-------YFGELKGMSKNEALTQAKYWFERLNI-----DQwwkkKLSELSKGMAQKiq 141
Cdd:COG3845 337 YIPEDRlgrGLVPDMSVAENLIlgryrrpPFSRGGFLDRKAIRAFAEELIEEFDVrtpgpDT----PARSLSGGNQQK-- 410
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 312445476 142 FVV--TVLHRPKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIIL 186
Cdd:COG3845 411 VILarELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDAGAAVLL 457
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
7-158 |
2.69e-11 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 64.04 E-value: 2.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 7 ITKTYDagrkvalsDFSIEVPTGSIY-----GLLGPNGAGKTSFIRIINQITQADSGKVFIDneilsphhIKaIGYMPEE 81
Cdd:COG1245 347 LTKSYG--------GFSLEVEGGEIRegevlGIVGPNGIGKTTFAKILAGVLKPDEGEVDED--------LK-ISYKPQY 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 82 RGLYKNMTVgDQILYfgelkgmSKNEALTQAKYW----FERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDE 157
Cdd:COG1245 410 ISPDYDGTV-EEFLR-------SANTDDFGSSYYkteiIKPLGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDE 481
|
.
gi 312445476 158 P 158
Cdd:COG1245 482 P 482
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
7-197 |
3.19e-11 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 63.12 E-value: 3.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 7 ITKTYDagrKVALS-DFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILS--PHHIKAIGYMPEERG 83
Cdd:PRK11000 9 VTKAYG---DVVISkDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNdvPPAERGVGMVFQSYA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 84 LYKNMTVGDQiLYFG-ELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGF 162
Cdd:PRK11000 86 LYPHLSVAEN-MSFGlKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNL 164
|
170 180 190
....*....|....*....|....*....|....*....
gi 312445476 163 DpvnANL---IKDQIINL-KNNGTTIILSTHrmESVEEM 197
Cdd:PRK11000 165 D---AALrvqMRIEISRLhKRLGRTMIYVTH--DQVEAM 198
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
18-198 |
4.16e-11 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 63.37 E-value: 4.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 18 ALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVfidnEILSPHHIKAIGympeeRGLYKNMTVGDQILYF 97
Cdd:PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV----DIKGSAALIAIS-----SGLNGQLTGIENIELK 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 98 GELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNANLIKDQIINL 177
Cdd:PRK13545 110 GLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEF 189
|
170 180
....*....|....*....|.
gi 312445476 178 KNNGTTIILSTHRMESVEEMC 198
Cdd:PRK13545 190 KEQGKTIFFISHSLSQVKSFC 210
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
14-189 |
8.42e-11 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 60.20 E-value: 8.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 14 GRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSphhikaigympEERGLYKNmtvgdQ 93
Cdd:cd03231 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLD-----------FQRDSIAR-----G 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 94 ILYFGELKGM----SKNEALTqakyWFERLNIDQWWKKKLSE-------------LSKGMAQKIQFVVTVLHRPKLLILD 156
Cdd:cd03231 75 LLYLGHAPGIkttlSVLENLR----FWHADHSDEQVEEALARvglngfedrpvaqLSAGQQRRVALARLLLSGRPLWILD 150
|
170 180 190
....*....|....*....|....*....|...
gi 312445476 157 EPFSGFDPVNANLIKDQIINLKNNGTTIILSTH 189
Cdd:cd03231 151 EPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
1-201 |
9.69e-11 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 62.13 E-value: 9.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHIT-KTYDaGRKVaLSDFSIEVPTGSiyGLL--GPNGAGKTSFIRIINQITQADSGKVFI--DNEIL----SPhh 71
Cdd:COG4178 362 ALALEDLTlRTPD-GRPL-LEDLSLSLKPGE--RLLitGPSGSGKSTLLRAIAGLWPYGSGRIARpaGARVLflpqRP-- 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 72 ikaigYMPEerGlyknmTVGDQILYFGELKGMSK---NEALTQAK--YWFERLNIDQWWKKklsELSKGMAQKIQFVVTV 146
Cdd:COG4178 436 -----YLPL--G-----TLREALLYPATAEAFSDaelREALEAVGlgHLAERLDEEADWDQ---VLSLGEQQRLAFARLL 500
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 312445476 147 LHRPKLLILDEPFSGFDPVNANLIKDQIINlKNNGTTIILSTHRmESVEEMCDYV 201
Cdd:COG4178 501 LHKPDWLFLDEATSALDEENEAALYQLLRE-ELPGTTVISVGHR-STLAAFHDRV 553
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
1-192 |
1.64e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 60.49 E-value: 1.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGRKV-ALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHI----KAI 75
Cdd:PRK13642 4 ILEVENLVFKYEKESDVnQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVwnlrRKI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 76 GYM---PEERglYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKL 152
Cdd:PRK13642 84 GMVfqnPDNQ--FVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEI 161
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 312445476 153 LILDEPFSGFDPVNANLIKDQIINLKNNGTTIILS-THRME 192
Cdd:PRK13642 162 IILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSiTHDLD 202
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
1-214 |
1.79e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 60.39 E-value: 1.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGRKvALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVF---IDNEILS--PHHIKAI 75
Cdd:PRK13644 1 MIRLENVSYSYPDGTP-ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLvsgIDTGDFSklQGIRKLV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 76 GYM---PEERglYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKL 152
Cdd:PRK13644 80 GIVfqnPETQ--FVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPEC 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 312445476 153 LILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEmCDYVALVNHSKKILDGK 214
Cdd:PRK13644 158 LIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVLEGE 218
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
13-224 |
1.95e-10 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 61.22 E-value: 1.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 13 AGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQAD---SGKVFIDNEILSPHHIKAI-GYMPEERGLYKNM 88
Cdd:TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGvkgSGSVLLNGMPIDAKEMRAIsAYVQQDDLFIPTL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 89 TVGDQILYFGELK---GMSKNEALTQAKYWFERLN--------IDQWWKKKlsELSKGMAQKIQFVVTVLHRPKLLILDE 157
Cdd:TIGR00955 115 TVREHLMFQAHLRmprRVTKKEKRERVDEVLQALGlrkcantrIGVPGRVK--GLSGGERKRLAFASELLTDPPLLFCDE 192
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 312445476 158 PFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMES-VEEMCDYVALVNHSKKILDGKVFEVRERFKQ 224
Cdd:TIGR00955 193 PTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSeLFELFDKIILMAEGRVAYLGSPDQAVPFFSD 260
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
10-189 |
2.11e-10 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 58.91 E-value: 2.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 10 TYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILsphhikaigymPEERGLYknmt 89
Cdd:TIGR01189 7 ACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPL-----------AEQRDEP---- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 90 vGDQILYFGELKGMsKNE--ALTQAKYW-----FERLNIDQWWKK---------KLSELSKGMAQKIQFVVTVLHRPKLL 153
Cdd:TIGR01189 72 -HENILYLGHLPGL-KPElsALENLHFWaaihgGAQRTIEDALAAvgltgfedlPAAQLSAGQQRRLALARLWLSRRPLW 149
|
170 180 190
....*....|....*....|....*....|....*.
gi 312445476 154 ILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTH 189
Cdd:TIGR01189 150 ILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTH 185
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
14-196 |
2.37e-10 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 60.80 E-value: 2.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 14 GRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRII---------NQIT----QADSGKVFIDneilsphhIKA-IGYMP 79
Cdd:PRK10938 271 NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLItgdhpqgysNDLTlfgrRRGSGETIWD--------IKKhIGYVS 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 80 EERGL-YK-NMTVGDQIL--YF---GELKGMSknEALTQ-AKYWFERLNID-QWWKKKLSELSKGMaQKIQFVVTVL--H 148
Cdd:PRK10938 343 SSLHLdYRvSTSVRNVILsgFFdsiGIYQAVS--DRQQKlAQQWLDILGIDkRTADAPFHSLSWGQ-QRLALIVRALvkH 419
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 149 rPKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIIL------------STHRMESVEE 196
Cdd:PRK10938 420 -PTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLfvshhaedapacITHRLEFVPD 478
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
1-191 |
2.41e-10 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 59.50 E-value: 2.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGRKvALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILS-------PHHIK 73
Cdd:PRK10908 1 MIRFEHVSKAYLGGRQ-ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITrlknrevPFLRR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 74 AIGYMPEERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLL 153
Cdd:PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVL 159
|
170 180 190
....*....|....*....|....*....|....*...
gi 312445476 154 ILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRM 191
Cdd:PRK10908 160 LADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI 197
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
1-190 |
2.59e-10 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 60.92 E-value: 2.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGRKVaLSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEilsphhiKAIGYMPe 80
Cdd:TIGR00954 451 GIKFENIPLVTPNGDVL-IESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAK-------GKLFYVP- 521
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 81 ERGLYKNMTVGDQILY------FGElKGMSKNE-----ALTQAKYWFER---LNIDQWWKkklSELSKGMAQKIQFVVTV 146
Cdd:TIGR00954 522 QRPYMTLGTLRDQIIYpdssedMKR-RGLSDKDleqilDNVQLTHILEReggWSAVQDWM---DVLSGGEKQRIAMARLF 597
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 312445476 147 LHRPKLLILDEPFSGFDPVnanlIKDQIINL-KNNGTTIILSTHR 190
Cdd:TIGR00954 598 YHKPQFAILDECTSAVSVD----VEGYMYRLcREFGITLFSVSHR 638
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-68 |
2.65e-10 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 59.74 E-value: 2.65e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 312445476 1 MLRAEHITktYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILS 68
Cdd:COG4559 1 MLEAENLS--VRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLA 66
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
1-164 |
2.87e-10 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 59.21 E-value: 2.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDagrKVALSdFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEilsPHHIKAIGYMP- 79
Cdd:PRK10771 1 MLKLTDITWLYH---HLPMR-FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQ---DHTTTPPSRRPv 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 80 ----EERGLYKNMTVGDQIlyfgelkGMSKNEALtqakywfeRLNIDQwwKKKL-----------------SELSKGMAQ 138
Cdd:PRK10771 74 smlfQENNLFSHLTVAQNI-------GLGLNPGL--------KLNAAQ--REKLhaiarqmgiedllarlpGQLSGGQRQ 136
|
170 180
....*....|....*....|....*.
gi 312445476 139 KIQFVVTVLHRPKLLILDEPFSGFDP 164
Cdd:PRK10771 137 RVALARCLVREQPILLLDEPFSALDP 162
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
7-227 |
2.93e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 59.79 E-value: 2.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 7 ITKTYDAG---RKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNeiLSPHHI----------K 73
Cdd:PRK13646 8 VSYTYQKGtpyEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDD--ITITHKtkdkyirpvrK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 74 AIGYM---PEERgLYKNmTVGDQILYFGELKGMSkneaLTQAKYWFERLNIDQWWKKKLSELSK-----GMAQKIQFVVT 145
Cdd:PRK13646 86 RIGMVfqfPESQ-LFED-TVEREIIFGPKNFKMN----LDEVKNYAHRLLMDLGFSRDVMSQSPfqmsgGQMRKIAIVSI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 146 VLHRPKLLILDEPFSGFDPVNanliKDQIINL-----KNNGTTIILSTHRMESVEEMCDYVALVNhskkilDGKVFEV-- 218
Cdd:PRK13646 160 LAMNPDIIVLDEPTAGLDPQS----KRQVMRLlkslqTDENKTIILVSHDMNEVARYADEVIVMK------EGSIVSQts 229
|
250
....*....|
gi 312445476 219 -RERFKQNVY 227
Cdd:PRK13646 230 pKELFKDKKK 239
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
14-189 |
3.11e-10 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 58.73 E-value: 3.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 14 GRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNE-ILSPHHIKAIGYMPEERGLYKNMTVGD 92
Cdd:PRK13539 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGdIDDPDVAEACHYLGHRNAMKPALTVAE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 93 QILYFGELKGmSKNEALTQAkywFERLNIDQWWKKKLSELSKGmaQKIQFVVT---VLHRPkLLILDEPFSGFDPVNANL 169
Cdd:PRK13539 93 NLEFWAAFLG-GEELDIAAA---LEAVGLAPLAHLPFGYLSAG--QKRRVALArllVSNRP-IWILDEPTAALDAAAVAL 165
|
170 180
....*....|....*....|.
gi 312445476 170 IKDQI-INLKNNGtTIILSTH 189
Cdd:PRK13539 166 FAELIrAHLAQGG-IVIAATH 185
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-210 |
3.62e-10 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 60.33 E-value: 3.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITkTYDA---GRKVaLSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQ-ADSGKVFIDN---EILSPHH-I 72
Cdd:PRK13549 259 ILEVRNLT-AWDPvnpHIKR-VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPgRWEGEIFIDGkpvKIRNPQQaI 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 73 KA-IGYMPEER---GLYKNMTVGDQILyFGELKGMSKNEALTQAKywfERLNIDQWWKK----------KLSELSKGMAQ 138
Cdd:PRK13549 337 AQgIAMVPEDRkrdGIVPVMGVGKNIT-LAALDRFTGGSRIDDAA---ELKTILESIQRlkvktaspelAIARLSGGNQQ 412
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 312445476 139 KIQFVVTVLHRPKLLILDEPFSGFDpVNAnliKDQIINLKNN----GTTIILSTHRMESVEEMCDYVaLVNHSKKI 210
Cdd:PRK13549 413 KAVLAKCLLLNPKILILDEPTRGID-VGA---KYEIYKLINQlvqqGVAIIVISSELPEVLGLSDRV-LVMHEGKL 483
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1-220 |
3.71e-10 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 60.40 E-value: 3.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYdAGRKvALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKV-FIDNEIL--SPHHIKA--I 75
Cdd:PRK10762 4 LLQLKGIDKAF-PGVK-ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSIlYLGKEVTfnGPKSSQEagI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 76 GYMPEERGLYKNMTVGDQILYFGELK----GMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPK 151
Cdd:PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVnrfgRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESK 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 312445476 152 LLILDEPFSGF-DPVNANLIKdqIIN-LKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEVRE 220
Cdd:PRK10762 162 VIIMDEPTDALtDTETESLFR--VIReLKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE 230
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
18-224 |
1.26e-09 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 57.90 E-value: 1.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 18 ALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEIlsphHIKAIgympeERGLYKNMTVGDQILYF 97
Cdd:PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEV----SVIAI-----SAGLSGQLTGIENIEFK 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 98 GELKGMSKNE--ALTQAKYWFERLN--IDQWWKKklseLSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNANLIKDQ 173
Cdd:PRK13546 110 MLCMGFKRKEikAMTPKIIEFSELGefIYQPVKK----YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDK 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 312445476 174 IINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEVRERFKQ 224
Cdd:PRK13546 186 IYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEA 236
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
1-189 |
1.28e-09 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 57.10 E-value: 1.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGRKV--ALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFI--------DNEILSPH 70
Cdd:PRK10584 6 IVEVHHLKKSVGQGEHElsILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLvgqplhqmDEEARAKL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 71 HIKAIGYMPEERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRP 150
Cdd:PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRP 165
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 312445476 151 KLLILDEPFSGFDPVNANLIKDQIINL-KNNGTTIILSTH 189
Cdd:PRK10584 166 DVLFADEPTGNLDRQTGDKIADLLFSLnREHGTTLILVTH 205
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
2-240 |
1.44e-09 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 57.38 E-value: 1.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSpHHIKAIGYMPEE 81
Cdd:PRK11247 13 LLLNAVSKRY--GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-EAREDTRLMFQD 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 82 RGLYKNMTVGDQIlYFGeLKGMSKNEALT--QAKYWFERLNidQWwkkkLSELSKGMAQKIQFVVTVLHRPKLLILDEPF 159
Cdd:PRK11247 90 ARLLPWKKVIDNV-GLG-LKGQWRDAALQalAAVGLADRAN--EW----PAALSGGQKQRVALARALIHRPGLLLLDEPL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 160 SGFDPVNANLIKDQIINL-KNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEVRERFKQNVYevvLAHSNSEL 238
Cdd:PRK11247 162 GALDALTRIEMQDLIESLwQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVDLPRPRRRGSAR---LAELEAEV 238
|
..
gi 312445476 239 LE 240
Cdd:PRK11247 239 LQ 240
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
18-194 |
1.58e-09 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 56.65 E-value: 1.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 18 ALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNeilsphhiKAIGYMPEERgLYKNMTV--GDQIL 95
Cdd:cd03369 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDG--------IDISTIPLED-LRSSLTIipQDPTL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 96 YFGELKGMSKNEALTQAKYWFERLNIdqwwKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNANLIKdQII 175
Cdd:cd03369 94 FSGTIRSNLDPFDEYSDEEIYGALRV----SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQ-KTI 168
|
170
....*....|....*....
gi 312445476 176 NLKNNGTTIILSTHRMESV 194
Cdd:cd03369 169 REEFTNSTILTIAHRLRTI 187
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
7-190 |
2.16e-09 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 56.11 E-value: 2.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 7 ITKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPH---HIKAIGYMPEERG 83
Cdd:PRK13540 5 IELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDlctYQKQLCFVGHRSG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 84 LYKNMTVGDQILYfgELKGMSKNEALTQAKYWFErlnIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFD 163
Cdd:PRK13540 85 INPYLTLRENCLY--DIHFSPGAVGITELCRLFS---LEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD 159
|
170 180
....*....|....*....|....*..
gi 312445476 164 PVNANLIKDQIINLKNNGTTIILSTHR 190
Cdd:PRK13540 160 ELSLLTIITKIQEHRAKGGAVLLTSHQ 186
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
13-203 |
2.23e-09 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 57.10 E-value: 2.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 13 AGRkVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKA----IGYMPEERGLYKNM 88
Cdd:PRK10575 22 PGR-TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAfarkVAYLPQQLPAAEGM 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 89 TVGDQIL-----YFGELK--GMSKNEALTQA------KYWFERLnidqwwkkkLSELSKGMAQKIQFVVTVLHRPKLLIL 155
Cdd:PRK10575 101 TVRELVAigrypWHGALGrfGAADREKVEEAislvglKPLAHRL---------VDSLSGGERQRAWIAMLVAQDSRCLLL 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 312445476 156 DEPFSGFDpvnanlIKDQIINL-------KNNGTTIILSTHRMESVEEMCDY-VAL 203
Cdd:PRK10575 172 DEPTSALD------IAHQVDVLalvhrlsQERGLTVIAVLHDINMAARYCDYlVAL 221
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
2-62 |
2.41e-09 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 57.82 E-value: 2.41e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 312445476 2 LRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFI 62
Cdd:PRK11819 325 IEAENLSKSF--GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI 383
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
18-201 |
3.07e-09 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 57.12 E-value: 3.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 18 ALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQaDSGKVFID----NEI----LSP--------HHIKAIGYMPEE 81
Cdd:PRK15093 22 AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTK-DNWRVTADrmrfDDIdllrLSPrerrklvgHNVSMIFQEPQS 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 82 rGLYKNMTVGDQIlyfgelkgMSKNEALTQAKYWFERLNidqwWKKKLS---------------------ELSKGMAQKI 140
Cdd:PRK15093 101 -CLDPSERVGRQL--------MQNIPGWTYKGRWWQRFG----WRKRRAiellhrvgikdhkdamrsfpyELTEGECQKV 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 312445476 141 QFVVTVLHRPKLLILDEPFSGFDPVNanliKDQIINL-----KNNGTTIILSTHRMESVEEMCDYV 201
Cdd:PRK15093 168 MIAIALANQPRLLIADEPTNAMEPTT----QAQIFRLltrlnQNNNTTILLISHDLQMLSQWADKI 229
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-189 |
4.61e-09 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 56.09 E-value: 4.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKAIGyMPE 80
Cdd:PRK11701 6 LLSVRGLTKLY--GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALS-EAE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 81 ERGLYKN---------------------------MTVGDQilYFGELKGmsknealtQAKYWFERLNIDQwwkKKLSEL- 132
Cdd:PRK11701 83 RRRLLRTewgfvhqhprdglrmqvsaggnigerlMAVGAR--HYGDIRA--------TAGDWLERVEIDA---ARIDDLp 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 312445476 133 ---SKGMAQKIQFVVTVLHRPKLLILDEPFSGFD-PVNANLIkDQIINLKNN-GTTIILSTH 189
Cdd:PRK11701 150 ttfSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDvSVQARLL-DLLRGLVRElGLAVVIVTH 210
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
14-189 |
4.91e-09 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 54.94 E-value: 4.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 14 GRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQAD--SGKVFIDNEILSPHHIKAIGYMPEERGLYKNMTVG 91
Cdd:cd03232 18 GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGviTGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 92 DQILYFGELKGMSkneaLTQAKywfeRLNIDqwwkkklSELSKgmaqkiqfvvtvlhRPKLLILDEPFSGFDPVNANLIK 171
Cdd:cd03232 98 EALRFSALLRGLS----VEQRK----RLTIG-------VELAA--------------KPSILFLDEPTSGLDSQAAYNIV 148
|
170
....*....|....*...
gi 312445476 172 DQIINLKNNGTTIILSTH 189
Cdd:cd03232 149 RFLKKLADSGQAILCTIH 166
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
7-224 |
5.17e-09 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 57.23 E-value: 5.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 7 ITKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADsGKVFID----NEILSPHHIKAIGYMPEER 82
Cdd:TIGR01271 1223 LTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDgvswNSVTLQTWRKAFGVIPQKV 1301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 83 GLY-----KNMTVGDQilyfgelkgMSKNEALTQAKYWFERLNIDQWWKK---KLSE----LSKGMAQKIQFVVTVLHRP 150
Cdd:TIGR01271 1302 FIFsgtfrKNLDPYEQ---------WSDEEIWKVAEEVGLKSVIEQFPDKldfVLVDggyvLSNGHKQLMCLARSILSKA 1372
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 312445476 151 KLLILDEPFSGFDPVNANLIKDQIINLKNNgTTIILSTHRMESVEEMCDYVALVNHSKKILDG--KVFEVRERFKQ 224
Cdd:TIGR01271 1373 KILLLDEPSAHLDPVTLQIIRKTLKQSFSN-CTVILSEHRVEALLECQQFLVIEGSSVKQYDSiqKLLNETSLFKQ 1447
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
12-218 |
7.36e-09 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 56.40 E-value: 7.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 12 DAGRKVALSDFSIEVPTGSIYGLLGPNGAGKT----SFIRIINQitqaDSGKVFIDNEILSPHHIKAI-------GYMPE 80
Cdd:PRK10261 25 EQQKIAAVRNLSFSLQRGETLAIVGESGSGKSvtalALMRLLEQ----AGGLVQCDKMLLRRRSRQVIelseqsaAQMRH 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 81 ERGLYKNM-------------TVGDQILYFGEL-KGMSKNEALTQAKYWFERLNIDQWwKKKLS----ELSKGMAQKIQF 142
Cdd:PRK10261 101 VRGADMAMifqepmtslnpvfTVGEQIAESIRLhQGASREEAMVEAKRMLDQVRIPEA-QTILSryphQLSGGMRQRVMI 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 143 VVTVLHRPKLLILDEPFSGFDPVnanlIKDQIINL-----KNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFE 217
Cdd:PRK10261 180 AMALSCRPAVLIADEPTTALDVT----IQAQILQLikvlqKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQ 255
|
.
gi 312445476 218 V 218
Cdd:PRK10261 256 I 256
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
5-217 |
1.05e-08 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 54.42 E-value: 1.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 5 EHITKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILS--PHHI--KAIGYMPE 80
Cdd:cd03244 6 KNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISkiGLHDlrSRISIIPQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 81 erglyknmtvgDQILYFGELK------GMSKNEALTQAkywFERLNIDQWWKKKL-----------SELSKGMAQKIQFV 143
Cdd:cd03244 86 -----------DPVLFSGTIRsnldpfGEYSDEELWQA---LERVGLKEFVESLPggldtvveeggENLSVGQRQLLCLA 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 312445476 144 VTVLHRPKLLILDEPFSGFDPVNANLIKdQIINLKNNGTTIILSTHRMESVEEmCDyvalvnhskKIL---DGKVFE 217
Cdd:cd03244 152 RALLRKSKILVLDEATASVDPETDALIQ-KTIREAFKDCTVLTIAHRLDTIID-SD---------RILvldKGRVVE 217
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
12-217 |
1.22e-08 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 55.85 E-value: 1.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 12 DAGRKVALSDFSIEVPTGSIYGLLGPNGAGKT----SFIRIINQITQADSGKVFIDNE---ILSPHHIKAIgympeeRG- 83
Cdd:COG4172 19 GGGTVEAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQdllGLSERELRRI------RGn 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 84 ------------LykN--MTVGDQIlyfGEL----KGMSKNEALTQAKYWFERLNIDQWwKKKLS----ELSKGMAQKIQ 141
Cdd:COG4172 93 riamifqepmtsL--NplHTIGKQI---AEVlrlhRGLSGAAARARALELLERVGIPDP-ERRLDayphQLSGGQRQRVM 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 142 FVVTVLHRPKLLILDEPFSGFDPVnanlIKDQIINL-----KNNGTTIILSTHRMESVEEMCDYVALVNHskkildGKVF 216
Cdd:COG4172 167 IAMALANEPDLLIADEPTTALDVT----VQAQILDLlkdlqRELGMALLLITHDLGVVRRFADRVAVMRQ------GEIV 236
|
.
gi 312445476 217 E 217
Cdd:COG4172 237 E 237
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1-210 |
1.35e-08 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 55.60 E-value: 1.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGRKVA-LSDFSIEVPTGSIYGLLGPNGAGKTSFIR-IINQITQADSGKVFIDN---EILSPHH-IKA 74
Cdd:TIGR02633 257 ILEARNLTCWDVINPHRKrVDDVSFSLRRGEILGVAGLVGAGRTELVQaLFGAYPGKFEGNVFINGkpvDIRNPAQaIRA 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 75 -IGYMPEER---GLYKNMTVGDQILyFGELKGMSKNEALTQAKywfERLNIDQWWKK----------KLSELSKGMAQKI 140
Cdd:TIGR02633 337 gIAMVPEDRkrhGIVPILGVGKNIT-LSVLKSFCFKMRIDAAA---ELQIIGSAIQRlkvktaspflPIGRLSGGNQQKA 412
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 312445476 141 QFVVTVLHRPKLLILDEPFSGFDpVNANLIKDQIIN-LKNNGTTIILSTHRMESVEEMCDYVaLVNHSKKI 210
Cdd:TIGR02633 413 VLAKMLLTNPRVLILDEPTRGVD-VGAKYEIYKLINqLAQEGVAIIVVSSELAEVLGLSDRV-LVIGEGKL 481
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
16-205 |
1.48e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 55.75 E-value: 1.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 16 KVALSDFSIEVPTGSIYGLLGPNGAGKTSFIR-IINQITQADSGKVFIDNeilsphhikAIGYMPEERGLYkNMTVGDQI 94
Cdd:PLN03232 630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISaMLGELSHAETSSVVIRG---------SVAYVPQVSWIF-NATVRENI 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 95 LyFGelkgmSKNEAltqAKYWFE------RLNIDQWWKKKLSE-------LSKGMAQKIQFVVTVLHRPKLLILDEPFSG 161
Cdd:PLN03232 700 L-FG-----SDFES---ERYWRAidvtalQHDLDLLPGRDLTEigergvnISGGQKQRVSMARAVYSNSDIYIFDDPLSA 770
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 312445476 162 FDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMcDYVALVN 205
Cdd:PLN03232 771 LDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLM-DRIILVS 813
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
19-192 |
3.59e-08 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 53.10 E-value: 3.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 19 LSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKA--------IGYMPEERGLYkNMTV 90
Cdd:cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEAtrsrnrysVAYAAQKPWLL-NATV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 91 GDQILyFGELKGMSKNEALTQAKYWFERLNI----DQwwkKKLSE----LSKGMAQKIQFVVTVLHRPKLLILDEPFSGF 162
Cdd:cd03290 96 EENIT-FGSPFNKQRYKAVTDACSLQPDIDLlpfgDQ---TEIGErginLSGGQRQRICVARALYQNTNIVFLDDPFSAL 171
|
170 180 190
....*....|....*....|....*....|..
gi 312445476 163 D-PVNANLIKDQIIN-LKNNGTTIILSTHRME 192
Cdd:cd03290 172 DiHLSDHLMQEGILKfLQDDKRTLVLVTHKLQ 203
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
2-163 |
3.80e-08 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 53.45 E-value: 3.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEIL----SPHHIKAIGY 77
Cdd:PRK10253 8 LRGEQLTLGY--GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIqhyaSKEVARRIGL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 78 MPEERGLYKNMTVGD---------QILYFGELKgmSKNEALTQAkywFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLH 148
Cdd:PRK10253 86 LAQNATTPGDITVQElvargryphQPLFTRWRK--EDEEAVTKA---MQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ 160
|
170
....*....|....*
gi 312445476 149 RPKLLILDEPFSGFD 163
Cdd:PRK10253 161 ETAIMLLDEPTTWLD 175
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
25-218 |
3.89e-08 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 53.72 E-value: 3.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 25 EVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILS--------PHHIKAIGYMPEERGLYKNMTVGDQILY 96
Cdd:PRK11144 20 TLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFdaekgiclPPEKRRIGYVFQDARLFPHYKVRGNLRY 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 97 fgelkGMSKNEAlTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFD--------PVNAN 168
Cdd:PRK11144 100 -----GMAKSMV-AQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDlprkrellPYLER 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 312445476 169 LIKDqiINlknngTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEV 218
Cdd:PRK11144 174 LARE--IN-----IPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEV 216
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
5-217 |
5.18e-08 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 52.83 E-value: 5.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 5 EHITKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPH-------HIKAIGY 77
Cdd:PRK13648 11 KNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDnfeklrkHIGIVFQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 78 MPEerglykNMTVGDQILY---FG-ELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLL 153
Cdd:PRK13648 91 NPD------NQFVGSIVKYdvaFGlENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVI 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 312445476 154 ILDEPFSGFDPVNANLIKDQIINLK-NNGTTIILSTHRM-ESVEEmcDYVALVNhskkilDGKVFE 217
Cdd:PRK13648 165 ILDEATSMLDPDARQNLLDLVRKVKsEHNITIISITHDLsEAMEA--DHVIVMN------KGTVYK 222
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
1-189 |
9.22e-08 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 51.64 E-value: 9.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITktYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNE---ILSPH-HIKAIG 76
Cdd:PRK10247 7 LLQLQNVG--YLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEdisTLKPEiYRQQVS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 77 YMPEERGLYKNmTVGDQILYFGELKGMSKNEALTQAKywFERLNIDQ-WWKKKLSELSKGMAQKIQFVVTVLHRPKLLIL 155
Cdd:PRK10247 85 YCAQTPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLDD--LERFALPDtILTKNIAELSGGEKQRISLIRNLQFMPKVLLL 161
|
170 180 190
....*....|....*....|....*....|....*
gi 312445476 156 DEPFSGFDPVNANLIKDQIINL-KNNGTTIILSTH 189
Cdd:PRK10247 162 DEITSALDESNKHNVNEIIHRYvREQNIAVLWVTH 196
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
19-218 |
1.30e-07 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 51.93 E-value: 1.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 19 LSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILS---------PHHIKAIGYMPEERGLYKNmt 89
Cdd:PRK13638 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDyskrgllalRQQVATVFQDPEQQIFYTD-- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 90 VGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNANL 169
Cdd:PRK13638 95 IDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQ 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 312445476 170 IKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEV 218
Cdd:PRK13638 175 MIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV 223
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
7-163 |
2.20e-07 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 51.38 E-value: 2.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 7 ITKTYDAGRKVaLSDFSIEVPTGSIYGLLGPNGAGKTSFIRII---NQITqadSGKVFIDNEILSphHIKaigymPEERG 83
Cdd:PRK11650 9 VRKSYDGKTQV-IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVaglERIT---SGEIWIGGRVVN--ELE-----PADRD 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 84 ---------LYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLI 154
Cdd:PRK11650 78 iamvfqnyaLYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFL 157
|
....*....
gi 312445476 155 LDEPFSGFD 163
Cdd:PRK11650 158 FDEPLSNLD 166
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-214 |
2.61e-07 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 51.75 E-value: 2.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHikaigympeE 81
Cdd:PRK11160 339 LTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYS---------E 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 82 RGLYKNMTVGDQILYF--GELKgmsKNEALTQAKYWFERL-----------------NIDQWwkkkLSE----LSKGMAQ 138
Cdd:PRK11160 410 AALRQAISVVSQRVHLfsATLR---DNLLLAAPNASDEALievlqqvgleklleddkGLNAW----LGEggrqLSGGEQR 482
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 312445476 139 KIQFVVTVLHRPKLLILDEPFSGFDPVNanliKDQIINLKNN---GTTIILSTHRMESVEEMcDYVALVNHSKKILDGK 214
Cdd:PRK11160 483 RLGIARALLHDAPLLLLDEPTEGLDAET----ERQILELLAEhaqNKTVLMITHRLTGLEQF-DRICVMDNGQIIEQGT 556
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
1-228 |
3.24e-07 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 51.33 E-value: 3.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYdAGRKvALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADS--GKVFIDNEILSPHHIKAigym 78
Cdd:NF040905 1 ILEMRGITKTF-PGVK-ALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVYPHGSyeGEILFDGEVCRFKDIRD---- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 79 PEERG---------------LYKNMTVGDQILYFGElkgMSKNEALTQAKYWFERLNIDQ----------WWKKKLSELS 133
Cdd:NF040905 75 SEALGiviihqelalipylsIAENIFLGNERAKRGV---IDWNETNRRARELLAKVGLDEspdtlvtdigVGKQQLVEIA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 134 KGMAQKIqfvvtvlhrpKLLILDEPFSGF-DPVNANLIkDQIINLKNNGTTIILSTHRMESVEEMCDYVALvnhskkILD 212
Cdd:NF040905 152 KALSKDV----------KLLILDEPTAALnEEDSAALL-DLLLELKAQGITSIIISHKLNEIRRVADSITV------LRD 214
|
250
....*....|....*.
gi 312445476 213 GKVFEVRERFKQNVYE 228
Cdd:NF040905 215 GRTIETLDCRADEVTE 230
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
19-229 |
5.56e-07 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 49.55 E-value: 5.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 19 LSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQAdSGKVFIDNEILS--PHHIKAI--GYMPEERGLYKNMTVGdQI 94
Cdd:PRK03695 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEawSAAELARhrAYLSQQQTPPFAMPVF-QY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 95 LYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVL--HR---P--KLLILDEPFSGFDPVNA 167
Cdd:PRK03695 90 LTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLqvWPdinPagQLLLLDEPMNSLDVAQQ 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 312445476 168 NLIkDQIIN-LKNNGTTIILSTHRMESVEEMCDYVALVNHSKKILDGKVFEV-RERFKQNVYEV 229
Cdd:PRK03695 170 AAL-DRLLSeLCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVlTPENLAQVFGV 232
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
2-186 |
1.10e-06 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 49.52 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHItktydAGRKVAlSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNE---ILSPHH-IKAiGY 77
Cdd:PRK11288 258 LRLDGL-----KGPGLR-EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKpidIRSPRDaIRA-GI 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 78 M--PEER---GLYKNMTVGDQI--------LYFGELKGmSKNEALTqAKYWFERLNI-----DQwwkkKLSELSKGMAQK 139
Cdd:PRK11288 331 MlcPEDRkaeGIIPVHSVADNInisarrhhLRAGCLIN-NRWEAEN-ADRFIRSLNIktpsrEQ----LIMNLSGGNQQK 404
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 312445476 140 iqfvvTVLHR-----PKLLILDEPFSGFDpVNA-NLIKDQIINLKNNGTTIIL 186
Cdd:PRK11288 405 -----AILGRwlsedMKVILLDEPTRGID-VGAkHEIYNVIYELAAQGVAVLF 451
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
36-189 |
1.12e-06 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 48.31 E-value: 1.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 36 GPNGAGKTSFIRIINQITQADSGKVFIDNEILS----PHHIKAIGYMPeerGLYKNMTVGDQILYFGELKGMSKNEALTQ 111
Cdd:PRK13543 44 GDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATrgdrSRFMAYLGHLP---GLKADLSTLENLHFLCGLHGRRAKQMPGS 120
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 312445476 112 AkywFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTH 189
Cdd:PRK13543 121 A---LAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
1-189 |
1.17e-06 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 48.26 E-value: 1.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDaGRKVaLSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEIL-----SPHHIKA- 74
Cdd:PRK13538 1 MLEARNLACERD-ERIL-FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIrrqrdEYHQDLLy 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 75 IGYMPeerGLYKNMTVGDQILYFGELKGMSKNEALTQAkywFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLI 154
Cdd:PRK13538 79 LGHQP---GIKTELTALENLRFYQRLHGPGDDEALWEA---LAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWI 152
|
170 180 190
....*....|....*....|....*....|....*
gi 312445476 155 LDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTH 189
Cdd:PRK13538 153 LDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
1-199 |
1.54e-06 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 48.27 E-value: 1.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGR--KVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKA---- 74
Cdd:PRK11629 5 LLQCDNLCKRYQEGSvqTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAkael 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 75 ----IGYMPEERGLYKNMTVGDQILYFGELKGMSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRP 150
Cdd:PRK11629 85 rnqkLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNP 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 312445476 151 KLLILDEPFSGFDPVNANLIKDQIINL-KNNGTTIILSTH------RMESVEEMCD 199
Cdd:PRK11629 165 RLVLADEPTGNLDARNADSIFQLLGELnRLQGTAFLVVTHdlqlakRMSRQLEMRD 220
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
7-196 |
1.89e-06 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 48.31 E-value: 1.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 7 ITKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTS----FIRIINQitqadSGKVFID----NEILSPHHIKAIGYM 78
Cdd:cd03289 8 LTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTllsaFLRLLNT-----EGDIQIDgvswNSVPLQKWRKAFGVI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 79 PEERGLYKNmTVGDQILYFGElkgMSKNEALTQAKYWFERLNIDQWWKK---KLSE----LSKGMAQKIQFVVTVLHRPK 151
Cdd:cd03289 83 PQKVFIFSG-TFRKNLDPYGK---WSDEEIWKVAEEVGLKSVIEQFPGQldfVLVDggcvLSHGHKQLMCLARSVLSKAK 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 312445476 152 LLILDEPFSGFDPVNANLIKdQIINLKNNGTTIILSTHRMESVEE 196
Cdd:cd03289 159 ILLLDEPSAHLDPITYQVIR-KTLKQAFADCTVILSEHRIEAMLE 202
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
11-203 |
1.93e-06 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 49.01 E-value: 1.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 11 YDAGRkvaLSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHH-----IKAIGYMPEER--- 82
Cdd:PRK09700 274 RDRKK---VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSpldavKKGMAYITESRrdn 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 83 GLYKNMTVGDQI-----LYFGELKGM-----SKNEALTqAKYWFERLNID-QWWKKKLSELSKGMAQKIQFVVTVLHRPK 151
Cdd:PRK09700 351 GFFPNFSIAQNMaisrsLKDGGYKGAmglfhEVDEQRT-AENQRELLALKcHSVNQNITELSGGNQQKVLISKWLCCCPE 429
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 312445476 152 LLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVAL 203
Cdd:PRK09700 430 VIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAV 481
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
6-158 |
3.57e-06 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 48.01 E-value: 3.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 6 HITKTYDAGRKVaLSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFidneiLSPhHIKaIGYMPEERGLY 85
Cdd:TIGR03719 9 RVSKVVPPKKEI-LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEAR-----PQP-GIK-VGYLPQEPQLD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 86 KNMTV-GDQILYFGELKGMSK-----NEALTQAKYWFERL---------NIDQW--------------------WKKKLS 130
Cdd:TIGR03719 81 PTKTVrENVEEGVAEIKDALDrfneiSAKYAEPDADFDKLaaeqaelqeIIDAAdawdldsqleiamdalrcppWDADVT 160
|
170 180
....*....|....*....|....*...
gi 312445476 131 ELSKGMAQKIQFVVTVLHRPKLLILDEP 158
Cdd:TIGR03719 161 KLSGGERRRVALCRLLLSKPDMLLLDEP 188
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
28-197 |
3.79e-06 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 45.83 E-value: 3.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 28 TGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNeilSPHHIKAIGYMPEERGLYKNMTVGDQILYFgelkgmskNE 107
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYID---GEDILEEVLDQLLLIIVGGKKASGSGELRL--------RL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 108 ALTQAKYwferlnidqwwkkklselskgmaqkiqfvvtvlHRPKLLILDEPFSGFDPVNANLIKDQI------INLKNNG 181
Cdd:smart00382 70 ALALARK---------------------------------LKPDVLILDEITSLLDAEQEALLLLLEelrlllLLKSEKN 116
|
170
....*....|....*.
gi 312445476 182 TTIILSTHRMESVEEM 197
Cdd:smart00382 117 LTVILTTNDEKDLGPA 132
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
5-195 |
5.00e-06 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 47.71 E-value: 5.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 5 EHITKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHIKA----IGYMPE 80
Cdd:PRK11176 345 RNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASlrnqVALVSQ 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 81 ERGLYkNMTVGDQILYFGELKgMSKNEALTQAK--YWFERLN-IDQWWKKKLSE----LSKGMAQKIQFVVTVLHRPKLL 153
Cdd:PRK11176 425 NVHLF-NDTIANNIAYARTEQ-YSREQIEEAARmaYAMDFINkMDNGLDTVIGEngvlLSGGQRQRIAIARALLRDSPIL 502
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 312445476 154 ILDEPFSGFDPVNANLIKDQIINLKNNGTTIILStHRMESVE 195
Cdd:PRK11176 503 ILDEATSALDTESERAIQAALDELQKNRTSLVIA-HRLSTIE 543
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
2-158 |
5.08e-06 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 47.58 E-value: 5.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 2 LRAEHITKTYDAGrkVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKV-FIDNeilsphhiKAIGYMPE 80
Cdd:PRK15064 320 LEVENLTKGFDNG--PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVkWSEN--------ANIGYYAQ 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 81 --ERGLYKNMTVGDqilYFGELKGMSKNEALTQA---KYWFERLNIdqwwKKKLSELSKGMAQKIQFVVTVLHRPKLLIL 155
Cdd:PRK15064 390 dhAYDFENDLTLFD---WMSQWRQEGDDEQAVRGtlgRLLFSQDDI----KKSVKVLSGGEKGRMLFGKLMMQKPNVLVM 462
|
...
gi 312445476 156 DEP 158
Cdd:PRK15064 463 DEP 465
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
130-194 |
6.78e-06 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 47.72 E-value: 6.78e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 312445476 130 SELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTI-ILSTHRMESV 194
Cdd:PTZ00265 578 SKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRItIIIAHRLSTI 643
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
11-60 |
1.57e-05 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 46.10 E-value: 1.57e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 312445476 11 YDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRI-INQItQADSGKV 60
Cdd:PRK11147 327 YQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLmLGQL-QADSGRI 376
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
101-210 |
1.64e-05 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 46.24 E-value: 1.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 101 KGMSKNEALTQAKYWFERLNIDQWwKKKLS----ELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFD-PVNAnlikdQII 175
Cdd:PRK15134 123 RGMRREAARGEILNCLDRVGIRQA-AKRLTdyphQLSGGERQRVMIAMALLTRPELLIADEPTTALDvSVQA-----QIL 196
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 312445476 176 NLKNN-----GTTIILSTHRMESVEEMCDYVALVNHSKKI 210
Cdd:PRK15134 197 QLLRElqqelNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
18-201 |
1.72e-05 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 45.47 E-value: 1.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 18 ALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKV-FIDNEILSPHHIKaigyMPEER------------GL 84
Cdd:PRK15079 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVaWLGKDLLGMKDDE----WRAVRsdiqmifqdplaSL 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 85 YKNMTVGDQI-----LYFGElkgMSKNEALTQAKYWFERLN-----IDQWwkkkLSELSKGMAQKIQFVVTVLHRPKLLI 154
Cdd:PRK15079 112 NPRMTIGEIIaeplrTYHPK---LSRQEVKDRVKAMMLKVGllpnlINRY----PHEFSGGQCQRIGIARALILEPKLII 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 312445476 155 LDEPFSGFDpVNanlIKDQIINL-----KNNGTTIILSTHRMESVEEMCDYV 201
Cdd:PRK15079 185 CDEPVSALD-VS---IQAQVVNLlqqlqREMGLSLIFIAHDLAVVKHISDRV 232
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
1-215 |
1.84e-05 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 45.45 E-value: 1.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTY-------DAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSP---H 70
Cdd:PRK10419 3 LLNVSGLSHHYahgglsgKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKlnrA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 71 HIKA------------IGYMPEERglyknmTVGDQIlyfGE----LKGMSKNEALTQAKYWFERLNIDQWWKKKL-SELS 133
Cdd:PRK10419 83 QRKAfrrdiqmvfqdsISAVNPRK------TVREII---REplrhLLSLDKAERLARASEMLRAVDLDDSVLDKRpPQLS 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 134 KGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVnanlIKDQIINL-----KNNGTTIILSTHRMESVEEMCDYVALVNHSK 208
Cdd:PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLV----LQAGVIRLlkklqQQFGTACLFITHDLRLVERFCQRVMVMDNGQ 229
|
....*..
gi 312445476 209 KILDGKV 215
Cdd:PRK10419 230 IVETQPV 236
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
132-195 |
1.98e-05 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 46.18 E-value: 1.98e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 312445476 132 LSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNANLIKDQIINLKNNG-TTIILSTHRMESVE 195
Cdd:PTZ00265 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKAdKTIITIAHRIASIK 1423
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
15-205 |
2.01e-05 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 46.00 E-value: 2.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 15 RKV-ALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNE---ILSPHHIKAIG------YMPEERGL 84
Cdd:PRK10261 335 REVhAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQridTLSPGKLQALRrdiqfiFQDPYASL 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 85 YKNMTVGDQILYFGELKGMSKNEALTQAKYWF-ERLNI--DQWWKKKlSELSKGMAQKIQFVVTVLHRPKLLILDEPFSG 161
Cdd:PRK10261 415 DPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLlERVGLlpEHAWRYP-HEFSGGQRQRICIARALALNPKVIIADEAVSA 493
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 312445476 162 FDPVnanlIKDQIINL-----KNNGTTIILSTHRMESVEEMCDYVALVN 205
Cdd:PRK10261 494 LDVS----IRGQIINLlldlqRDFGIAYLFISHDMAVVERISHRVAVMY 538
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
131-196 |
3.02e-05 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 44.73 E-value: 3.02e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 312445476 131 ELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVnanlIKDQIINL-----KNNGTTIILSTHRMESVEE 196
Cdd:PRK11022 153 QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVT----IQAQIIELllelqQKENMALVLITHDLALVAE 219
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
8-252 |
5.47e-05 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 44.94 E-value: 5.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 8 TKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVfidneilsphHIK-AIGYMPEERGLyK 86
Cdd:TIGR00957 643 TFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV----------HMKgSVAYVPQQAWI-Q 711
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 87 NMTVGDQILyFGELKGMSKNEALTQAKYWFERLNI----DQW-WKKKLSELSKGMAQKIQFVVTVLHRPKLLILDEPFSG 161
Cdd:TIGR00957 712 NDSLRENIL-FGKALNEKYYQQVLEACALLPDLEIlpsgDRTeIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSA 790
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 162 FDPVNANLIKDQIINLKN--NGTTIILSTHRMESVEEMcDYVALVNhskkilDGKVFEVrerfkqNVYEVVLAHSNSelL 239
Cdd:TIGR00957 791 VDAHVGKHIFEHVIGPEGvlKNKTRILVTHGISYLPQV-DVIIVMS------GGKISEM------GSYQELLQRDGA--F 855
|
250
....*....|...
gi 312445476 240 ENFKSEFSPSDWQ 252
Cdd:TIGR00957 856 AEFLRTYAPDEQQ 868
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
1-212 |
6.27e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 44.58 E-value: 6.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHHI----KAIG 76
Cdd:PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLtdlrRVLS 1313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 77 YMPEERGLYKNmTVGDQILYFGELKGMSKNEALTQA--KYWFER--LNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKL 152
Cdd:PLN03232 1314 IIPQSPVLFSG-TVRFNIDPFSEHNDADLWEALERAhiKDVIDRnpFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKI 1392
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 153 LILDEPFSGFDPVNANLIKdQIINLKNNGTTIILSTHRMESVEEmCDYVaLVNHSKKILD 212
Cdd:PLN03232 1393 LVLDEATASVDVRTDSLIQ-RTIREEFKSCTMLVIAHRLNTIID-CDKI-LVLSSGQVLE 1449
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
129-189 |
6.68e-05 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 43.92 E-value: 6.68e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 312445476 129 LSELSKGMaQKIQFVVTVLHR----PKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTH 189
Cdd:pfam13304 234 AFELSDGT-KRLLALLAALLSalpkGGLLLIDEPESGLHPKLLRRLLELLKELSRNGAQLILTTH 297
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
132-241 |
8.64e-05 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 43.85 E-value: 8.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 132 LSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNANLIKDQIINLKNNGTTIILSTHRMESVEEMCDYVALVNHSKKIL 211
Cdd:PRK10938 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAE 215
|
90 100 110
....*....|....*....|....*....|
gi 312445476 212 DGKvfevRERFKQNVYEVVLAHsnSELLEN 241
Cdd:PRK10938 216 TGE----REEILQQALVAQLAH--SEQLEG 239
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
11-194 |
1.23e-04 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 43.78 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 11 YDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEilsphHIKAIGYmpeeRGLYKNMTV 90
Cdd:TIGR00957 1294 YREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGL-----NIAKIGL----HDLRFKITI 1364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 91 --GDQILYFGELkgmsknealtqakywfeRLNIDQ---------WWKKKLSE----------------------LSKGMA 137
Cdd:TIGR00957 1365 ipQDPVLFSGSL-----------------RMNLDPfsqysdeevWWALELAHlktfvsalpdkldhecaeggenLSVGQR 1427
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 312445476 138 QKIQFVVTVLHRPKLLILDEPFSGFDPVNANLIKdQIINLKNNGTTIILSTHRMESV 194
Cdd:TIGR00957 1428 QLVCLARALLRKTKILVLDEATAAVDLETDNLIQ-STIRTQFEDCTVLTIAHRLNTI 1483
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
132-197 |
1.60e-04 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 42.91 E-value: 1.60e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 312445476 132 LSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNANLIKdQIINLKNNGTTIILSTHRMESVEEM 197
Cdd:PRK11174 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM-QALNAASRRQTTLMVTHQLEDLAQW 550
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
1-90 |
1.93e-04 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 42.80 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAehiTKTYDAGRKVaLSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFidneiLSPhHIKaIGYMPE 80
Cdd:PRK11819 9 MNRV---SKVVPPKKQI-LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEAR-----PAP-GIK-VGYLPQ 77
|
90
....*....|
gi 312445476 81 ERGLYKNMTV 90
Cdd:PRK11819 78 EPQLDPEKTV 87
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
16-201 |
2.21e-04 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 42.84 E-value: 2.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 16 KVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDneilsphhiKAIGYMPEERGLYkNMTVGDQIL 95
Cdd:PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE---------RSIAYVPQQAWIM-NATVRGNIL 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 96 YFGElkgmsKNEALTQAKYWFERLNIDqwwkkkLSELSKGMAQKI----------QFVVTVLHRP-----KLLILDEPFS 160
Cdd:PTZ00243 743 FFDE-----EDAARLADAVRVSQLEAD------LAQLGGGLETEIgekgvnlsggQKARVSLARAvyanrDVYLLDDPLS 811
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 312445476 161 GFDPVNANLIKDQIINLKNNGTTIILSTHRMESVeEMCDYV 201
Cdd:PTZ00243 812 ALDAHVGERVVEECFLGALAGKTRVLATHQVHVV-PRADYV 851
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
1-47 |
2.62e-04 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 41.74 E-value: 2.62e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 312445476 1 MLRAEHITKTYDAGrkVALSDFSIEVPTGSIYGLLGPNGAGKTSFIR 47
Cdd:PRK13547 1 MLTADHLHVARRHR--AILRDLSLRIEPGRVTALLGRNGAGKSTLLK 45
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
18-201 |
2.73e-04 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 40.77 E-value: 2.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 18 ALSDFSIEVPTGSIYGLLGPNGAGKTSFIriiNQITQADSGKVFIDNEILSPHHikaigympeerglyknmtvgdQILYF 97
Cdd:cd03238 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLV---NEGLYASGKARLISFLPKFSRN---------------------KLIFI 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 98 GELKGMSKNEaltqakywFERLNIDQwwkkKLSELSKGMAQKIQFVVTVLHRPK--LLILDEPFSGFDPVNANLIKDQII 175
Cdd:cd03238 66 DQLQFLIDVG--------LGYLTLGQ----KLSTLSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQDINQLLEVIK 133
|
170 180
....*....|....*....|....*.
gi 312445476 176 NLKNNGTTIILSTHRmESVEEMCDYV 201
Cdd:cd03238 134 GLIDLGNTVILIEHN-LDVLSSADWI 158
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
12-201 |
2.86e-04 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 42.08 E-value: 2.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 12 DAGRKVaLSDFSIEVPTGSIYGLLGPNGAGKTSFIRII------NQItqadSGKVFID-NEI-LS--PHHIKA-IGYMPE 80
Cdd:NF040905 270 HPERKV-VDDVSLNVRRGEIVGIAGLMGAGRTELAMSVfgrsygRNI----SGTVFKDgKEVdVStvSDAIDAgLAYVTE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 81 ER---GLYKNMTVGDQILyFGELKGMSK------NEALTQAKYWFERLNI-----DQwwkkKLSELSKGMAQKIqfvvtV 146
Cdd:NF040905 345 DRkgyGLNLIDDIKRNIT-LANLGKVSRrgvideNEEIKVAEEYRKKMNIktpsvFQ----KVGNLSGGNQQKV-----V 414
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 312445476 147 LHR-----PKLLILDEPFSGFDpVNANLIKDQIIN-LKNNGTTIILSTHRMESVEEMCD--YV 201
Cdd:NF040905 415 LSKwlftdPDVLILDEPTRGID-VGAKYEIYTIINeLAAEGKGVIVISSELPELLGMCDriYV 476
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
131-218 |
3.20e-04 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 41.61 E-value: 3.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 131 ELSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNANLIKDQIINL-KNNGTTIILSTHRMESVEEMCDYVALVNHSKK 209
Cdd:PRK10418 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIvQKRALGMLLVTHDMGVVARLADDVAVMSHGRI 219
|
....*....
gi 312445476 210 ILDGKVFEV 218
Cdd:PRK10418 220 VEQGDVETL 228
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
34-189 |
3.24e-04 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 41.88 E-value: 3.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 34 LLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPhhikaiGYMPEERGLYKnmTVGDQILYFGEL---KGMSKNEALT 110
Cdd:PRK10522 354 LIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTA------EQPEDYRKLFS--AVFTDFHLFDQLlgpEGKPANPALV 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 111 QAkyWFERLNIdqwwKKKLSE---------LSKGMAQKIQFVVTVLHRPKLLILDEPFSGFDPVNANLIKDQIIN-LKNN 180
Cdd:PRK10522 426 EK--WLERLKM----AHKLELedgrisnlkLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPlLQEM 499
|
....*....
gi 312445476 181 GTTIILSTH 189
Cdd:PRK10522 500 GKTIFAISH 508
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
22-160 |
3.86e-04 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 41.69 E-value: 3.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 22 FSIEVP-TGSIYGLLGPNGAGKTSFIRI-----------------INQITQADSGKVF-------IDNEILSPHHIKAIG 76
Cdd:COG1245 91 YGLPVPkKGKVTGILGPNGIGKSTALKIlsgelkpnlgdydeepsWDEVLKRFRGTELqdyfkklANGEIKVAHKPQYVD 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 77 YMPEergLYKNmTVGDqILyfgelkgmSKNEALTQAKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILD 156
Cdd:COG1245 171 LIPK---VFKG-TVRE-LL--------EKVDERGKLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFD 237
|
....
gi 312445476 157 EPFS 160
Cdd:COG1245 238 EPSS 241
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
22-163 |
3.96e-04 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 41.72 E-value: 3.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 22 FSIEVP-TGSIYGLLGPNGAGKTSFIRIINQITQADSGKV------------------------FIDNEILSPHHIKAIG 76
Cdd:PRK13409 91 YGLPIPkEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYeeepswdevlkrfrgtelqnyfkkLYNGEIKVVHKPQYVD 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 77 YMPEerglYKNMTVGDqilyfgELKGMSKNEALtqaKYWFERLNIDQWWKKKLSELSKGMAQKIQFVVTVLHRPKLLILD 156
Cdd:PRK13409 171 LIPK----VFKGKVRE------LLKKVDERGKL---DEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFD 237
|
....*..
gi 312445476 157 EPFSGFD 163
Cdd:PRK13409 238 EPTSYLD 244
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
1-199 |
9.36e-04 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 40.48 E-value: 9.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITktydAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKVFIDNEILSPHH-IKAI---- 75
Cdd:PRK10982 250 ILEVRNLT----SLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNaNEAInhgf 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 76 GYMPEER---GLYKNMTVGDQIL------YFGELKGMSKNEALTQAKYWFERLNIDQ-WWKKKLSELSKGMAQKIQFVVT 145
Cdd:PRK10982 326 ALVTEERrstGIYAYLDIGFNSLisnirnYKNKVGLLDNSRMKSDTQWVIDSMRVKTpGHRTQIGSLSGGNQQKVIIGRW 405
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 312445476 146 VLHRPKLLILDEPFSGFDpVNANL-IKDQIINLKNNGTTIILSTHRMESVEEMCD 199
Cdd:PRK10982 406 LLTQPEILMLDEPTRGID-VGAKFeIYQLIAELAKKDKGIIIISSEMPELLGITD 459
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
9-195 |
1.68e-03 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 38.49 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 9 KTYDAGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQItqadsgkVFIDNEILSPHHIKAIGYmpeerglyknm 88
Cdd:cd03227 1 KIVLGRFPSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLA-------LGGAQSATRRRSGVKAGC----------- 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 89 TVGDQILYF-GELKGMSKNEaltqakywferlnidqwwkKKLSELSKGMA-QKIQFVVtvlhrpkLLILDEPFSGFDPVN 166
Cdd:cd03227 63 IVAAVSAELiFTRLQLSGGE-------------------KELSALALILAlASLKPRP-------LYILDEIDRGLDPRD 116
|
170 180
....*....|....*....|....*....
gi 312445476 167 ANLIKDQIINLKNNGTTIILSTHRMESVE 195
Cdd:cd03227 117 GQALAEAILEHLVKGAQVIVITHLPELAE 145
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
1-60 |
4.91e-03 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 38.23 E-value: 4.91e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 312445476 1 MLRAEHITKTYdaGRKVALSDFSIEVPTGSIYGLLGPNGAGKTSFIRIINQITQADSGKV 60
Cdd:PRK10636 312 LLKMEKVSAGY--GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI 369
|
|
| |
