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Conserved domains on  [gi|315418822|gb|ADU15460|]
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hypothetical protein Astex_3853 (plasmid) [Asticcacaulis excentricus CB 48]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpB super family cl43481
ABC-type glycerol-3-phosphate transport system, periplasmic component [Carbohydrate transport ...
 4-52 4.35e-03

ABC-type glycerol-3-phosphate transport system, periplasmic component [Carbohydrate transport and metabolism];


The actual alignment was detected with superfamily member COG1653:

Pssm-ID: 441259 [Multi-domain]  Cd Length: 363  Bit Score: 33.86  E-value: 4.35e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 315418822   4 MKRLNLLALTLAVTTLGACAS----TPESDKGYTVKVVKMSPAPRDKFYKIVK 52
Cdd:COG1653    1 MRRLALALAAALALALAACGGggsgAAAAAGKVTLTVWHTGGGEAAALEALIK 53
 
Name Accession Description Interval E-value
UgpB COG1653
ABC-type glycerol-3-phosphate transport system, periplasmic component [Carbohydrate transport ...
 4-52 4.35e-03

ABC-type glycerol-3-phosphate transport system, periplasmic component [Carbohydrate transport and metabolism];


Pssm-ID: 441259 [Multi-domain]  Cd Length: 363  Bit Score: 33.86  E-value: 4.35e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 315418822   4 MKRLNLLALTLAVTTLGACAS----TPESDKGYTVKVVKMSPAPRDKFYKIVK 52
Cdd:COG1653    1 MRRLALALAAALALALAACGGggsgAAAAAGKVTLTVWHTGGGEAAALEALIK 53
 
Name Accession Description Interval E-value
UgpB COG1653
ABC-type glycerol-3-phosphate transport system, periplasmic component [Carbohydrate transport ...
 4-52 4.35e-03

ABC-type glycerol-3-phosphate transport system, periplasmic component [Carbohydrate transport and metabolism];


Pssm-ID: 441259 [Multi-domain]  Cd Length: 363  Bit Score: 33.86  E-value: 4.35e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 315418822   4 MKRLNLLALTLAVTTLGACAS----TPESDKGYTVKVVKMSPAPRDKFYKIVK 52
Cdd:COG1653    1 MRRLALALAAALALALAACGGggsgAAAAAGKVTLTVWHTGGGEAAALEALIK 53
COG4259 COG4259
Uncharacterized conserved protein, DUF4810 domain [Function unknown];
4-28 8.32e-03

Uncharacterized conserved protein, DUF4810 domain [Function unknown];


Pssm-ID: 443401 [Multi-domain]  Cd Length: 119  Bit Score: 32.25  E-value: 8.32e-03
                         10        20
                 ....*....|....*....|....*
gi 315418822   4 MKRLNLLALTLAVTTLGACASTPES 28
Cdd:COG4259    1 MKKSKLLALLLAALLLAGCASPPKP 25
YajG COG3056
Uncharacterized lipoprotein YajG [Function unknown];
4-26 8.78e-03

Uncharacterized lipoprotein YajG [Function unknown];


Pssm-ID: 442290  Cd Length: 192  Bit Score: 32.57  E-value: 8.78e-03
                         10        20
                 ....*....|....*....|...
gi 315418822   4 MKRLNLLALTLAVTTLGACASTP 26
Cdd:COG3056    1 MKKLKLLLLLLAALLLAGCASSP 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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