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Conserved domains on  [gi|332190736|gb|AEE28857|]
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Pentapeptide repeat-containing protein [Arabidopsis thaliana]

Protein Classification

pentapeptide repeat-containing protein( domain architecture ID 11442852)

pentapeptide repeat-containing protein (PRP) adopts a beta-helical structure and may have a targeting or structural function

CATH:  2.160.20.10
PubMed:  33925937|9655353

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
114-209 2.55e-15

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


:

Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 71.90  E-value: 2.55e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332190736 114 ADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADL---SDTLMDRMVLNEANLTNAVLVRSV 190
Cdd:COG1357   34 ANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSGANLanlSGANLSGANLSGANLRGANLSGAN 113

                         90
                 ....*....|....*....
gi 332190736 191 LTRSDLGGAKIEGADFSDA 209
Cdd:COG1357  114 LSGADLSGADLSGANLSGA 132
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
114-209 2.55e-15

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 71.90  E-value: 2.55e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332190736 114 ADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADL---SDTLMDRMVLNEANLTNAVLVRSV 190
Cdd:COG1357   34 ANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSGANLanlSGANLSGANLSGANLRGANLSGAN 113

                         90
                 ....*....|....*....
gi 332190736 191 LTRSDLGGAKIEGADFSDA 209
Cdd:COG1357  114 LSGADLSGADLSGANLSGA 132
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 125-168 4.53e-06

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 42.71  E-value: 4.53e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 332190736  125 NFRRANFTSADMRESDFSGSTFNGAYLEKAvaykaNFSGADLSD 168
Cdd:pfam00805   2 NLSGANLSGANLSGANLSGANLTGANLSGA-----DLSGANLSG 40
PRK15197 PRK15197
type III secretion system effector PipB;
115-209 6.81e-06

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 46.46  E-value: 6.81e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332190736 115 DLSKTVHSNENFRRANFTSADMresdfSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLTRS 194
Cdd:PRK15197 170 DLSDIDASNADFRETTLSNVNL-----VGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAILFGSDLTDT 244

                         90
                 ....*....|....*
gi 332190736 195 DLGGAKIEGADFSDA 209
Cdd:PRK15197 245 KLNGAKLDKIALTLA 259
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
114-209 2.55e-15

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 71.90  E-value: 2.55e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332190736 114 ADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADL---SDTLMDRMVLNEANLTNAVLVRSV 190
Cdd:COG1357   34 ANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSGANLanlSGANLSGANLSGANLRGANLSGAN 113

                         90
                 ....*....|....*....
gi 332190736 191 LTRSDLGGAKIEGADFSDA 209
Cdd:COG1357  114 LSGADLSGADLSGANLSGA 132
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
114-209 4.44e-14

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 68.81  E-value: 4.44e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332190736 114 ADLSKTVHSNENFRRAN---FTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSV 190
Cdd:COG1357   69 ADLSGANLTGADLSGANlanLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGAD 148

                         90
                 ....*....|....*....
gi 332190736 191 LTRSDLGGAKIEGADFSDA 209
Cdd:COG1357  149 LSGADLSGANLSGANLSGA 167
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
115-209 4.83e-13

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 65.73  E-value: 4.83e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332190736 115 DLSKTVHSNENFRRANFTSADMRESDFSGS----TFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSV 190
Cdd:COG1357    1 DLSGADLSGADLSGADLSGADLSGANLSGAlsgaNLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGAD 80

                         90       100
                 ....*....|....*....|..
gi 332190736 191 LTRSDL---GGAKIEGADFSDA 209
Cdd:COG1357   81 LSGANLanlSGANLSGANLSGA 102
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
107-209 3.24e-12

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 63.42  E-value: 3.24e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332190736 107 SAAQYGSADLSKTVHSNENFRRANFTSAdMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVL 186
Cdd:COG1357    3 SGADLSGADLSGADLSGADLSGANLSGA-LSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADL 81

                         90       100       110
                 ....*....|....*....|....*....|.
gi 332190736 187 VRS--------VLTRSDLGGAKIEGADFSDA 209
Cdd:COG1357   82 SGAnlanlsgaNLSGANLSGANLRGANLSGA 112
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
114-208 3.20e-11

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 60.73  E-value: 3.20e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332190736 114 ADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDtlmdrmvlneANLTNAVLVRSVLTR 193
Cdd:COG1357   87 ANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSG----------ANLSGADLSGADLSG 156

                         90
                 ....*....|....*
gi 332190736 194 SDLGGAKIEGADFSD 208
Cdd:COG1357  157 ANLSGANLSGANLAN 171
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
114-202 5.61e-11

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 59.95  E-value: 5.61e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332190736 114 ADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLtr 193
Cdd:COG1357   92 ANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGANLSGANL-- 169


                 ....*....
gi 332190736 194 SDLGGAKIE 202
Cdd:COG1357  170 ANLEGADLK 178
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 125-168 4.53e-06

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 42.71  E-value: 4.53e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 332190736  125 NFRRANFTSADMRESDFSGSTFNGAYLEKAvaykaNFSGADLSD 168
Cdd:pfam00805   2 NLSGANLSGANLSGANLSGANLTGANLSGA-----DLSGANLSG 40
PRK15197 PRK15197
type III secretion system effector PipB;
115-209 6.81e-06

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 46.46  E-value: 6.81e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332190736 115 DLSKTVHSNENFRRANFTSADMresdfSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLTRS 194
Cdd:PRK15197 170 DLSDIDASNADFRETTLSNVNL-----VGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAILFGSDLTDT 244

                         90
                 ....*....|....*
gi 332190736 195 DLGGAKIEGADFSDA 209
Cdd:PRK15197 245 KLNGAKLDKIALTLA 259
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 159-208 7.06e-06

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 41.94  E-value: 7.06e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 332190736  159 ANFSGADLSdtlmdrmvlnEANLTNAVLVRSVLTRSDLGGAKIEGADFSD 208
Cdd:pfam00805   1 ANLSGANLS----------GANLSGANLSGANLTGANLSGADLSGANLSG 40
PRK15196 PRK15196
type III secretion system effector PipB2;
95-209 1.03e-05

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 46.15  E-value: 1.03e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332190736  95 FEADTRGefgigsaAQYGSADLSKTVHSNENFR---------------RANFTSADMRESDFSG-----STFNGAYLEKA 154
Cdd:PRK15196 185 FMADCEG-------ANFKGANLSGTSLGDSNFKnacledsimcgatldHANLTGANLQHASLLGcsmieCNCSGANMDHT 257

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 332190736 155 VAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAKIEGADFSDA 209
Cdd:PRK15196 258 NLSGATLIRADMSGATLQGATIMAAIMEGAVLTRANLRKASFISTNLDGADLAEA 312
PRK15196 PRK15196
type III secretion system effector PipB2;
129-209 1.07e-05

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 46.15  E-value: 1.07e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332190736 129 ANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTlmdrmVLNEANLTNAVLVRSVLTRSDLGGAKIEGADFSD 208
Cdd:PRK15196 162 ANLTAENLCDADLSGANLEGAVLFMADCEGANFKGANLSGT-----SLGDSNFKNACLEDSIMCGATLDHANLTGANLQH 236


                 .
gi 332190736 209 A 209
Cdd:PRK15196 237 A 237
PRK15197 PRK15197
type III secretion system effector PipB;
125-233 1.44e-05

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 45.69  E-value: 1.44e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332190736 125 NFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAKIEGA 204
Cdd:PRK15197 160 NLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAILFGS 239

                         90       100       110
                 ....*....|....*....|....*....|.
gi 332190736 205 DFSDAVID--LLQKQALckyaTGTNPLTGVD 233
Cdd:PRK15197 240 DLTDTKLNgaKLDKIAL----TLAKALTGAD 266
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 134-171 2.97e-05

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 40.40  E-value: 2.97e-05
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 332190736  134 ADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLM 171
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANL 38
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
126-206 6.07e-05

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 40.72  E-value: 6.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332190736  126 FRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLmdrmvLNEANLTNAVLVRSVLTRSDLGGAKIEGAD 205
Cdd:pfam13599   3 FTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVD-----FLEAQLKNAQFSGCNLKNSNFSDVKLKGAD 77


                  .
gi 332190736  206 F 206
Cdd:pfam13599  78 F 78
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 114-148 7.07e-05

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 39.25  E-value: 7.07e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 332190736  114 ADLSKTVHSNENFRRANFTSADMRESDFSGSTFNG 148
Cdd:pfam00805   6 ANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
107-168 1.03e-04

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 41.85  E-value: 1.03e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 332190736 107 SAAQYGSADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSD 168
Cdd:COG1357  110 SGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGANLSGANLAN 171
PRK15196 PRK15196
type III secretion system effector PipB2;
107-233 2.38e-04

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 41.92  E-value: 2.38e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332190736 107 SAAQYGSADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDT--LMDRMV---LNEANL 181
Cdd:PRK15196 175 SGANLEGAVLFMADCEGANFKGANLSGTSLGDSNFKNACLEDSIMCGATLDHANLTGANLQHAslLGCSMIecnCSGANM 254

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 332190736 182 TNAVLVRSVLTRSDLGGAKIEGADFSDAVID--LLQKQALCKYATGTNPLTGVD 233
Cdd:PRK15196 255 DHTNLSGATLIRADMSGATLQGATIMAAIMEgaVLTRANLRKASFISTNLDGAD 308
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 176-209 7.66e-04

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 36.55  E-value: 7.66e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 332190736  176 LNEANLTNAVLVRSVLTRSDLGGAKIEGADFSDA 209
Cdd:pfam00805   3 LSGANLSGANLSGANLSGANLTGANLSGADLSGA 36
PRK15196 PRK15196
type III secretion system effector PipB2;
122-194 1.65e-03

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 39.60  E-value: 1.65e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 332190736 122 SNENFRRANFTSADMRESDFSGSTFNGAY-----LEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLTRS 194
Cdd:PRK15196 250 SGANMDHTNLSGATLIRADMSGATLQGATimaaiMEGAVLTRANLRKASFISTNLDGADLAEANLNNTCFKDCTLTHL 327
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 114-152 2.03e-03

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 35.01  E-value: 2.03e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 332190736  114 ADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLE 152
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLS 39
PRK15197 PRK15197
type III secretion system effector PipB;
114-204 2.16e-03

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 38.76  E-value: 2.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332190736 114 ADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLTR 193
Cdd:PRK15197 179 ADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAILFGSDLTDTKLNGAKLDKIALTL 258

                         90
                 ....*....|..
gi 332190736 194 SD-LGGAKIEGA 204
Cdd:PRK15197 259 AKaLTGADLTGS 270
PRK15196 PRK15196
type III secretion system effector PipB2;
130-226 2.70e-03

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 38.83  E-value: 2.70e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332190736 130 NFTSADMRESDFSGSTFNGAYLEKAVaykanFSGADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAKIEGADFSDA 209
Cdd:PRK15196 248 NCSGANMDHTNLSGATLIRADMSGAT-----LQGATIMAAIMEGAVLTRANLRKASFISTNLDGADLAEANLNNTCFKDC 322

                         90
                 ....*....|....*...
gi 332190736 210 VI-DLLQKQALCKYATGT 226
Cdd:PRK15196 323 TLtHLRTEDATMSTSTQT 340
PRK15377 PRK15377
type III secretion system effector HECT-type E3 ubiquitin transferase;
106-211 5.05e-03

type III secretion system effector HECT-type E3 ubiquitin transferase;


Pssm-ID: 185275 [Multi-domain]  Cd Length: 782  Bit Score: 38.12  E-value: 5.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332190736 106 GSAAQYGSADLSKTVHSNENFRRANFTSA------DMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEA 179
Cdd:PRK15377 187 GEELTYADRDFSNADFRNINFSKINPSGFmlrdgdIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNS 266

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 332190736 180 NLTNAVLVRSVLTR-------SDLGGAKI-EGADFSDAVI 211
Cdd:PRK15377 267 DMNEASLKYSITTQqqpsfieTTLKNTIIiHKANLSGVIL 306
PRK15197 PRK15197
type III secretion system effector PipB;
109-200 5.18e-03

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 37.60  E-value: 5.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332190736 109 AQYGSADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLekavaykanfSGADLSDTLMDRMVLNEANLTNAvlvr 188
Cdd:PRK15197 194 ANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAIL----------FGSDLTDTKLNGAKLDKIALTLA---- 259

                         90
                 ....*....|..
gi 332190736 189 SVLTRSDLGGAK 200
Cdd:PRK15197 260 KALTGADLTGSQ 271
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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