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Conserved domains on  [gi|332193999|gb|AEE32120|]
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receptor like protein 6 [Arabidopsis thaliana]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 13746049)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

CATH:  3.80.10.10
Gene Ontology:  GO:0005515
PubMed:  11751054|7583641|14747988
SCOP:  4003523

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00113 super family cl33413
leucine-rich repeat receptor-like protein kinase; Provisional
 234-915 2.22e-63

leucine-rich repeat receptor-like protein kinase; Provisional


The actual alignment was detected with superfamily member PLN00113:

Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 232.43  E-value: 2.22e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 234 SLTLKGCNLLGRFPNSVLLIPNLESISLDHNlNLEGSLPN--FLRNNSLLKLSIYNTSFSGTIPN-SISNLKhltSLKLQ 310
Cdd:PLN00113  73 SIDLSGKNISGKISSAIFRLPYIQTINLSNN-QLSGPIPDdiFTTSSSLRYLNLSNNNFTGSIPRgSIPNLE---TLDLS 148

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 311 QSAFSGRIPSSLRSLSHLSNLVLSENNFVGEIPSSVSNLKQLTLFDVSDNNLNGNFPSSLLNLNQLRYIDICSNHFTGFL 390
Cdd:PLN00113 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 391 PPTISQLSNLEFFSACDNSFTGSIPSSLFNISSLTTLGLSYNQLNDttniknisllhnlqrllldnnnfkasQVDLDVFl 470
Cdd:PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG--------------------------PIPPSIF- 281

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 471 SLKRLVSLALSGIPLSTtnitsdsefsshleylelsgcniiEFPEFIRNQRNLSSIDLSNNNIKGQVPNWLWRLPELSTV 550
Cdd:PLN00113 282 SLQKLISLDLSDNSLSG------------------------EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 551 DLSNNSligFNGSLKALSGSK--IVMLDLSSNafqgplfmpprgiqyflgsynNFTGYIPPSICGLANPLILDLSNNNLH 628
Cdd:PLN00113 338 QLWSNK---FSGEIPKNLGKHnnLTVLDLSTN---------------------NLTGEIPEGLCSSGNLFKLILFSNSLE 393

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 629 GLIPRCLEAqMSSLSVLNLRNNSLDGSLPNIFMNAKVLSSLDVSHNTLEGklpaslagcsaleilnvesnNINDTFpfWl 708
Cdd:PLN00113 394 GEIPKSLGA-CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG--------------------RINSRK--W- 449

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 709 nSLPKLQVLVLRSNNFRGTLHNVdgvwFGFPLLRITDVSHNDFVGTLPSDyFMNWTAIsksetelqyigdpedygyytsl 788
Cdd:PLN00113 450 -DMPSLQMLSLARNKFFGGLPDS----FGSKRLENLDLSRNQFSGAVPRK-LGSLSEL---------------------- 501

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 789 vlmnkgvsmeMQriltkytvIDFAGNKIQGKIPESVGILKELHVLNLSSNAFTGHIPSSLANLTNLESLDISQNKIGGEI 868
Cdd:PLN00113 502 ----------MQ--------LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563

                        650       660       670       680
                 ....*....|....*....|....*....|....*....|....*..
gi 332193999 869 PPELGTLSSLEWINVSHNQLVGSIPQGTQFHRQNCSSYEGNPGIYGS 915
Cdd:PLN00113 564 PKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG 610
PLN03150 super family cl31977
hypothetical protein; Provisional
 81-174 1.39e-08

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03150:

Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 58.67  E-value: 1.39e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999  81 NSDCCY-----WDGITC--DTKSGK--VTGLDLSCSCLHGRLePNSsLFRLQHLQSVNLAyNNFTNSPIPAEFSKFMRLE 151
Cdd:PLN03150 393 NGDPCVpqqhpWSGADCqfDSTKGKwfIDGLGLDNQGLRGFI-PND-ISKLRHLQSINLS-GNSIRGNIPPSLGSITSLE 469

                         90       100
                 ....*....|....*....|...
gi 332193999 152 RLNLSRSSFSGHISIKLLQLTNL 174
Cdd:PLN03150 470 VLDLSYNSFNGSIPESLGQLTSL 492
LRRNT_2 pfam08263
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ...
 37-93 3.62e-06

Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.


:

Pssm-ID: 462411 [Multi-domain]  Cd Length: 41  Bit Score: 44.59  E-value: 3.62e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 332193999   37 HPDQRDALLEFKNEFKiwYPNGFLdidgvlmdvtsypktKSWT-KNSDCCYWDGITCD 93
Cdd:pfam08263   1 LNDDGQALLAFKSSLN--DPPGAL---------------SSWNsSSSDPCSWTGVTCD 41
 
Name Accession Description Interval E-value
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 234-915 2.22e-63

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 232.43  E-value: 2.22e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 234 SLTLKGCNLLGRFPNSVLLIPNLESISLDHNlNLEGSLPN--FLRNNSLLKLSIYNTSFSGTIPN-SISNLKhltSLKLQ 310
Cdd:PLN00113  73 SIDLSGKNISGKISSAIFRLPYIQTINLSNN-QLSGPIPDdiFTTSSSLRYLNLSNNNFTGSIPRgSIPNLE---TLDLS 148

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 311 QSAFSGRIPSSLRSLSHLSNLVLSENNFVGEIPSSVSNLKQLTLFDVSDNNLNGNFPSSLLNLNQLRYIDICSNHFTGFL 390
Cdd:PLN00113 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 391 PPTISQLSNLEFFSACDNSFTGSIPSSLFNISSLTTLGLSYNQLNDttniknisllhnlqrllldnnnfkasQVDLDVFl 470
Cdd:PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG--------------------------PIPPSIF- 281

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 471 SLKRLVSLALSGIPLSTtnitsdsefsshleylelsgcniiEFPEFIRNQRNLSSIDLSNNNIKGQVPNWLWRLPELSTV 550
Cdd:PLN00113 282 SLQKLISLDLSDNSLSG------------------------EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 551 DLSNNSligFNGSLKALSGSK--IVMLDLSSNafqgplfmpprgiqyflgsynNFTGYIPPSICGLANPLILDLSNNNLH 628
Cdd:PLN00113 338 QLWSNK---FSGEIPKNLGKHnnLTVLDLSTN---------------------NLTGEIPEGLCSSGNLFKLILFSNSLE 393

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 629 GLIPRCLEAqMSSLSVLNLRNNSLDGSLPNIFMNAKVLSSLDVSHNTLEGklpaslagcsaleilnvesnNINDTFpfWl 708
Cdd:PLN00113 394 GEIPKSLGA-CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG--------------------RINSRK--W- 449

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 709 nSLPKLQVLVLRSNNFRGTLHNVdgvwFGFPLLRITDVSHNDFVGTLPSDyFMNWTAIsksetelqyigdpedygyytsl 788
Cdd:PLN00113 450 -DMPSLQMLSLARNKFFGGLPDS----FGSKRLENLDLSRNQFSGAVPRK-LGSLSEL---------------------- 501

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 789 vlmnkgvsmeMQriltkytvIDFAGNKIQGKIPESVGILKELHVLNLSSNAFTGHIPSSLANLTNLESLDISQNKIGGEI 868
Cdd:PLN00113 502 ----------MQ--------LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563

                        650       660       670       680
                 ....*....|....*....|....*....|....*....|....*..
gi 332193999 869 PPELGTLSSLEWINVSHNQLVGSIPQGTQFHRQNCSSYEGNPGIYGS 915
Cdd:PLN00113 564 PKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG 610
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
164-540 2.79e-15

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 79.21  E-value: 2.79e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 164 ISIKLLQLTNLVSLDLSSSFPYSPSSLSIEKPLFLHLLAL-------NFMNLRELDMSSVDISSaIPIEFSYMWSLRSLT 236
Cdd:COG4886   64 SLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLsgneelsNLTNLESLDLSGNQLTD-LPEELANLTNLKELD 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 237 LKGCNLlGRFPNSVLLIPNLESISLDHNlNLEgSLPNFLRNNSLLK-LSIYNTSFSgTIPNSISNLKHLTSLKLQqsafs 315
Cdd:COG4886  143 LSNNQL-TDLPEPLGNLTNLKSLDLSNN-QLT-DLPEELGNLTNLKeLDLSNNQIT-DLPEPLGNLTNLEELDLS----- 213

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 316 gripsslrslshlsnlvlseNNFVGEIPSSVSNLKQLTLFDVSDNNLNgNFPsSLLNLNQLRYIDICSNHFTGFlpPTIS 395
Cdd:COG4886  214 --------------------GNQLTDLPEPLANLTNLETLDLSNNQLT-DLP-ELGNLTNLEELDLSNNQLTDL--PPLA 269

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 396 QLSNLEFFSACDNSFTGSIPSSLFNISSLTTLGLSYNQLNDTTNIKNISLLHNLQRLLLDNNNFKASQVDLDVFLSLKRL 475
Cdd:COG4886  270 NLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLAL 349

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 332193999 476 VSLALSGIPLSTTNITSDSEFSSHLEYLELSGCNIIEFPEFIRNQRNLSSIDLSNNNIKGQVPNW 540
Cdd:COG4886  350 LTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVLLLTLALLDAVNTE 414
PLN03150 PLN03150
hypothetical protein; Provisional
 81-174 1.39e-08

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 58.67  E-value: 1.39e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999  81 NSDCCY-----WDGITC--DTKSGK--VTGLDLSCSCLHGRLePNSsLFRLQHLQSVNLAyNNFTNSPIPAEFSKFMRLE 151
Cdd:PLN03150 393 NGDPCVpqqhpWSGADCqfDSTKGKwfIDGLGLDNQGLRGFI-PND-ISKLRHLQSINLS-GNSIRGNIPPSLGSITSLE 469

                         90       100
                 ....*....|....*....|...
gi 332193999 152 RLNLSRSSFSGHISIKLLQLTNL 174
Cdd:PLN03150 470 VLDLSYNSFNGSIPESLGQLTSL 492
LRRNT_2 pfam08263
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ...
 37-93 3.62e-06

Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.


Pssm-ID: 462411 [Multi-domain]  Cd Length: 41  Bit Score: 44.59  E-value: 3.62e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 332193999   37 HPDQRDALLEFKNEFKiwYPNGFLdidgvlmdvtsypktKSWT-KNSDCCYWDGITCD 93
Cdd:pfam08263   1 LNDDGQALLAFKSSLN--DPPGAL---------------SSWNsSSSDPCSWTGVTCD 41
LRR_8 pfam13855
Leucine rich repeat;
829-888 1.25e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 43.67  E-value: 1.25e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999  829 ELHVLNLSSNAFTGHIPSSLANLTNLESLDISQNKIGGEIPPELGTLSSLEWINVSHNQL 888
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 602-725 9.80e-05

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 45.42  E-value: 9.80e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 602 NFTGYIPPS----ICGL-ANPLI--LDLSNNNLHGLIPRCLEA--QMSSLSVLNLRNNSLDG--------SLPNIFMNak 664
Cdd:cd00116   61 NETGRIPRGlqslLQGLtKGCGLqeLDLSDNALGPDGCGVLESllRSSSLQELKLNNNGLGDrglrllakGLKDLPPA-- 138

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 332193999 665 vLSSLDVSHNTLEGKLPASLAG----CSALEILNVESNNINDT-FPFWLNSLP---KLQVLVLRSNNFR 725
Cdd:cd00116  139 -LEKLVLGRNRLEGASCEALAKalraNRDLKELNLANNGIGDAgIRALAEGLKancNLEVLDLNNNGLT 206
 
Name Accession Description Interval E-value
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 234-915 2.22e-63

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 232.43  E-value: 2.22e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 234 SLTLKGCNLLGRFPNSVLLIPNLESISLDHNlNLEGSLPN--FLRNNSLLKLSIYNTSFSGTIPN-SISNLKhltSLKLQ 310
Cdd:PLN00113  73 SIDLSGKNISGKISSAIFRLPYIQTINLSNN-QLSGPIPDdiFTTSSSLRYLNLSNNNFTGSIPRgSIPNLE---TLDLS 148

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 311 QSAFSGRIPSSLRSLSHLSNLVLSENNFVGEIPSSVSNLKQLTLFDVSDNNLNGNFPSSLLNLNQLRYIDICSNHFTGFL 390
Cdd:PLN00113 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 391 PPTISQLSNLEFFSACDNSFTGSIPSSLFNISSLTTLGLSYNQLNDttniknisllhnlqrllldnnnfkasQVDLDVFl 470
Cdd:PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG--------------------------PIPPSIF- 281

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 471 SLKRLVSLALSGIPLSTtnitsdsefsshleylelsgcniiEFPEFIRNQRNLSSIDLSNNNIKGQVPNWLWRLPELSTV 550
Cdd:PLN00113 282 SLQKLISLDLSDNSLSG------------------------EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 551 DLSNNSligFNGSLKALSGSK--IVMLDLSSNafqgplfmpprgiqyflgsynNFTGYIPPSICGLANPLILDLSNNNLH 628
Cdd:PLN00113 338 QLWSNK---FSGEIPKNLGKHnnLTVLDLSTN---------------------NLTGEIPEGLCSSGNLFKLILFSNSLE 393

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 629 GLIPRCLEAqMSSLSVLNLRNNSLDGSLPNIFMNAKVLSSLDVSHNTLEGklpaslagcsaleilnvesnNINDTFpfWl 708
Cdd:PLN00113 394 GEIPKSLGA-CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG--------------------RINSRK--W- 449

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 709 nSLPKLQVLVLRSNNFRGTLHNVdgvwFGFPLLRITDVSHNDFVGTLPSDyFMNWTAIsksetelqyigdpedygyytsl 788
Cdd:PLN00113 450 -DMPSLQMLSLARNKFFGGLPDS----FGSKRLENLDLSRNQFSGAVPRK-LGSLSEL---------------------- 501

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 789 vlmnkgvsmeMQriltkytvIDFAGNKIQGKIPESVGILKELHVLNLSSNAFTGHIPSSLANLTNLESLDISQNKIGGEI 868
Cdd:PLN00113 502 ----------MQ--------LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563

                        650       660       670       680
                 ....*....|....*....|....*....|....*....|....*..
gi 332193999 869 PPELGTLSSLEWINVSHNQLVGSIPQGTQFHRQNCSSYEGNPGIYGS 915
Cdd:PLN00113 564 PKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG 610
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 519-895 6.09e-36

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 147.69  E-value: 6.09e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 519 NQRNLSSIDLSNNNIKGQVPNWLWRLPELSTVDLSNNSLIGFNGSLKALSGSKIVMLDLSSNAFQGPLfmpPRGIQYFLG 598
Cdd:PLN00113  67 NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSI---PRGSIPNLE 143

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 599 ----SYNNFTGYIPPSICGLANPLILDLSNNNLHGLIPRCLeAQMSSLSVLNLRNNSLDGSLPNIFMNAKVLSSLDVSHN 674
Cdd:PLN00113 144 tldlSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 675 TLEGKLPASLAGCSALEILNVESNNINDTFPFWLNSLPKLQVLVLRSNNFRGTLHNVdgvWFGFPLLRITDVSHNDFVGT 754
Cdd:PLN00113 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS---IFSLQKLISLDLSDNSLSGE 299

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 755 LPSdyfmnwTAISKSETELqyigdpedygyytsLVLMNKGVSMEMQRILT---KYTVIDFAGNKIQGKIPESVGILKELH 831
Cdd:PLN00113 300 IPE------LVIQLQNLEI--------------LHLFSNNFTGKIPVALTslpRLQVLQLWSNKFSGEIPKNLGKHNNLT 359

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 332193999 832 VLNLSSNAFTGHIPSSLANLTNLESLDISQNKIGGEIPPELGTLSSLEWINVSHNQLVGSIPQG 895
Cdd:PLN00113 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 121-572 1.53e-29

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 126.89  E-value: 1.53e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 121 RLQHLQSVNLAYNNFTnSPIPAEFSKFMRLERLNLSRSSFSGHISIKLLQLTNLVSldlsssfpyspsslsiekplflhl 200
Cdd:PLN00113 234 GLTSLNHLDLVYNNLT-GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS------------------------ 288

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 201 lalnfmnlreLDMSSVDISSAIPIEFSYMWSLRSLTLKGCNLLGRFPNSVLLIPNLESISLDHNlNLEGSLP-NFLRNNS 279
Cdd:PLN00113 289 ----------LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN-KFSGEIPkNLGKHNN 357

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 280 LLKLSIYNTSFSGTIPNSISNLKHLTSLKLQQSAFSGRIPSSLRSLSHLSNLVLSENNFVGEIPSSVSNLKQLTLFDVSD 359
Cdd:PLN00113 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN 437

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 360 NNLNGNFPSSLLNLNQLRYIDICSNHFTGFLPPTiSQLSNLEFFSACDNSFTGSIPSSLFNISSLTTLGLSYNQLndttn 439
Cdd:PLN00113 438 NNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL----- 511

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 440 iknisllhnlqrllldnnnfkaSQVDLDVFLSLKRLVSLALSGIPLSTTNITSDSEFSShleylelsgcniiefpefirn 519
Cdd:PLN00113 512 ----------------------SGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV--------------------- 548

                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 332193999 520 qrnLSSIDLSNNNIKGQVPNWLWRLPELSTVDLSNNSLIG---FNGSLKALSGSKI 572
Cdd:PLN00113 549 ---LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGslpSTGAFLAINASAV 601
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 98-393 3.73e-26

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 116.10  E-value: 3.73e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999  98 KVTGLDLSCSCLHGrlEPNSSLFRLQHLQSVNLAYNNFTNSpIPAEFSKFMRLERLNLSRSSFSGHISIKLLQLTNLVSL 177
Cdd:PLN00113 285 KLISLDLSDNSLSG--EIPELVIQLQNLEILHLFSNNFTGK-IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 178 DLSSSFPYSPSSLSI--EKPLFLHLLALNFM------------NLRELDMSSVDISSAIPIEFSYMWSLRSLTLKGCNLL 243
Cdd:PLN00113 362 DLSTNNLTGEIPEGLcsSGNLFKLILFSNSLegeipkslgacrSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 244 GRFPNSVLLIPNLESISLDHNlNLEGSLPNFLRNNSLLKLSIYNTSFSGTIPNSISNLKHLTSLKLQQSAFSGRIPSSLR 323
Cdd:PLN00113 442 GRINSRKWDMPSLQMLSLARN-KFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS 520

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 324 SLSHLSNLVLSENNFVGEIPSSVSNLKQLTLFDVSDNNLNGNFPSSLLNLNQLRYIDICSNHFTGFLPPT 393
Cdd:PLN00113 521 SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 699-893 1.11e-19

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 94.91  E-value: 1.11e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 699 NINDTFPFWL----NSLPKLQVLVLRSNNFRGtlhNVDGVWFGFPLLRITDVSHNDFVGTLPSDyfmnwtaISKSETELQ 774
Cdd:PLN00113  52 NSSADVCLWQgitcNNSSRVVSIDLSGKNISG---KISSAIFRLPYIQTINLSNNQLSGPIPDD-------IFTTSSSLR 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 775 YigdpedygyytsLVLMNKGVSMEMQR-ILTKYTVIDFAGNKIQGKIPESVGILKELHVLNLSSNAFTGHIPSSLANLTN 853
Cdd:PLN00113 122 Y------------LNLSNNNFTGSIPRgSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS 189

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 332193999 854 LESLDISQNKIGGEIPPELGTLSSLEWINVSHNQLVGSIP 893
Cdd:PLN00113 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
164-540 2.79e-15

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 79.21  E-value: 2.79e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 164 ISIKLLQLTNLVSLDLSSSFPYSPSSLSIEKPLFLHLLAL-------NFMNLRELDMSSVDISSaIPIEFSYMWSLRSLT 236
Cdd:COG4886   64 SLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLsgneelsNLTNLESLDLSGNQLTD-LPEELANLTNLKELD 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 237 LKGCNLlGRFPNSVLLIPNLESISLDHNlNLEgSLPNFLRNNSLLK-LSIYNTSFSgTIPNSISNLKHLTSLKLQqsafs 315
Cdd:COG4886  143 LSNNQL-TDLPEPLGNLTNLKSLDLSNN-QLT-DLPEELGNLTNLKeLDLSNNQIT-DLPEPLGNLTNLEELDLS----- 213

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 316 gripsslrslshlsnlvlseNNFVGEIPSSVSNLKQLTLFDVSDNNLNgNFPsSLLNLNQLRYIDICSNHFTGFlpPTIS 395
Cdd:COG4886  214 --------------------GNQLTDLPEPLANLTNLETLDLSNNQLT-DLP-ELGNLTNLEELDLSNNQLTDL--PPLA 269

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 396 QLSNLEFFSACDNSFTGSIPSSLFNISSLTTLGLSYNQLNDTTNIKNISLLHNLQRLLLDNNNFKASQVDLDVFLSLKRL 475
Cdd:COG4886  270 NLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLAL 349

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 332193999 476 VSLALSGIPLSTTNITSDSEFSSHLEYLELSGCNIIEFPEFIRNQRNLSSIDLSNNNIKGQVPNW 540
Cdd:COG4886  350 LTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVLLLTLALLDAVNTE 414
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
361-728 1.27e-14

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 77.28  E-value: 1.27e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 361 NLNGNFPSSLLNLNQLRYIDICSNHFTGFLPPTISQLSNLEFFSACDNSFTGSIPSSLFNISSLTTLGLSYNQLNDTTNI 440
Cdd:COG4886    1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 441 KNISLLHNLQRLLLDNNNFKASQVDLDVFLSLKRLVSLALSGIPLstTNITSDSEFSSHLEYLELSGCNIIEFPEFIRNQ 520
Cdd:COG4886   81 LLSLLLLGLTDLGDLTNLTELDLSGNEELSNLTNLESLDLSGNQL--TDLPEELANLTNLKELDLSNNQLTDLPEPLGNL 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 521 RNLSSIDLSNNNIKGqVPNWLWRLPELSTVDLSNNSLIGFNGSLKALsgSKIVMLDLSSNAFQgplfmpprgiqyflgsy 600
Cdd:COG4886  159 TNLKSLDLSNNQLTD-LPEELGNLTNLKELDLSNNQITDLPEPLGNL--TNLEELDLSGNQLT----------------- 218

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 601 nnftgYIPPSICGLANPLILDLSNNNLHGLipRCLeAQMSSLSVLNLRNNSLdGSLPNIFmNAKVLSSLDVSHNTLEGKL 680
Cdd:COG4886  219 -----DLPEPLANLTNLETLDLSNNQLTDL--PEL-GNLTNLEELDLSNNQL-TDLPPLA-NLTNLKTLDLSNNQLTDLK 288

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 332193999 681 PASLAGCSALEILNVESNNINDTFPFWLNSLPKLQVLVLRSNNFRGTL 728
Cdd:COG4886  289 LKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVT 336
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
552-888 1.77e-13

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 73.81  E-value: 1.77e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 552 LSNNSLIGFNGSLKALSGSKIVMLDLSSNAFQGPLFMPPRGIQYFLGSYNNFTGYIPPSICGLANPLILDLSNNNLhgli 631
Cdd:COG4886   33 LLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEE---- 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 632 prclEAQMSSLSVLNLRNNSLDgSLPNIFMNAKVLSSLDVSHNTLEgKLPASLAGCSALEILNVESNNINDtFPFWLNSL 711
Cdd:COG4886  109 ----LSNLTNLESLDLSGNQLT-DLPEELANLTNLKELDLSNNQLT-DLPEPLGNLTNLKSLDLSNNQLTD-LPEELGNL 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 712 PKLQVLVLRSNnfrgtlhnvdgvwfgfpllRITDvshndfvgtlpsdyfmnwtaisksetelqyigdpedygyytslvlm 791
Cdd:COG4886  182 TNLKELDLSNN-------------------QITD---------------------------------------------- 196

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 792 nkgvsmemqriltkytvidfagnkiqgkIPESVGILKELHVLNLSSNAFTgHIPSSLANLTNLESLDISQNKIggEIPPE 871
Cdd:COG4886  197 ----------------------------LPEPLGNLTNLEELDLSGNQLT-DLPEPLANLTNLETLDLSNNQL--TDLPE 245

                        330
                 ....*....|....*..
gi 332193999 872 LGTLSSLEWINVSHNQL 888
Cdd:COG4886  246 LGNLTNLEELDLSNNQL 262
PLN03150 PLN03150
hypothetical protein; Provisional
 816-914 3.54e-13

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 73.70  E-value: 3.54e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 816 IQGKIPESVGILKELHVLNLSSNAFTGHIPSSLANLTNLESLDISQNKIGGEIPPELGTLSSLEWINVSHNQLVGSIPQ- 894
Cdd:PLN03150 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAa 509

                         90       100
                 ....*....|....*....|..
gi 332193999 895 --GTQFHRQNCsSYEGNPGIYG 914
Cdd:PLN03150 510 lgGRLLHRASF-NFTDNAGLCG 530
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
277-755 5.55e-13

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 72.27  E-value: 5.55e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 277 NNSLLKLSIYNTSFSGTIPNSISNLKHLTSLKLQQSAFSGRIPSSLRSLSHLSNLVLSENNFVGEIPssVSNLKQLTLFD 356
Cdd:COG4886    1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLL--LLSLLLLLLLS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 357 VSDNNLNGNFPSSLLNLNQLRYIDICSNhftgflpPTISQLSNLEFFSACDNSFTgSIPSSLFNISSLTTLGLSYNQLND 436
Cdd:COG4886   79 LLLLSLLLLGLTDLGDLTNLTELDLSGN-------EELSNLTNLESLDLSGNQLT-DLPEELANLTNLKELDLSNNQLTD 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 437 ttniknisllhnlqrllldnnnfkasqvdldvflslkrlvslalsgIPLSTTNITsdsefssHLEYLELSGCNIIEFPEF 516
Cdd:COG4886  151 ----------------------------------------------LPEPLGNLT-------NLKSLDLSNNQLTDLPEE 177

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 517 IRNQRNLSSIDLSNNNIKgQVPNWLWRLPELSTVDLSNNSLIGFNGSLKALSgsKIVMLDLSSNAFQGPlfmpprgiqyf 596
Cdd:COG4886  178 LGNLTNLKELDLSNNQIT-DLPEPLGNLTNLEELDLSGNQLTDLPEPLANLT--NLETLDLSNNQLTDL----------- 243

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 597 lgsynnftgyipPSICGLANPLILDLSNNNLHGLIPrclEAQMSSLSVLNLRNNSLDG----SLPNIFMNAKVLSSLDVS 672
Cdd:COG4886  244 ------------PELGNLTNLEELDLSNNQLTDLPP---LANLTNLKTLDLSNNQLTDlklkELELLLGLNSLLLLLLLL 308

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 673 HNTLEGKLPASLAGCSALEILNVESNNINDTFPFWLNSLPKLQVLVLRSNNFRGTLHNVDGVWFGFPLLRITDVSHNDFV 752
Cdd:COG4886  309 NLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLT 388


                 ...
gi 332193999 753 GTL 755
Cdd:COG4886  389 LLL 391
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
112-376 2.37e-10

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 63.80  E-value: 2.37e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 112 RLEPNSSLFRLQHLQSVNLAYNNFTNspIPAEFSKFMRLERLNLSRSSFSgHISIKLLQLTNLVSLDlsssfPYSPSSLS 191
Cdd:COG4886  102 DLSGNEELSNLTNLESLDLSGNQLTD--LPEELANLTNLKELDLSNNQLT-DLPEPLGNLTNLKSLD-----LSNNQLTD 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 192 IEKPLflhllaLNFMNLRELDMSSVDISSaIPIEFSYMWSLRSLTLkGCNLLGRFPNSVLLIPNLESISLDHNlNLEgSL 271
Cdd:COG4886  174 LPEEL------GNLTNLKELDLSNNQITD-LPEPLGNLTNLEELDL-SGNQLTDLPEPLANLTNLETLDLSNN-QLT-DL 243

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 272 PNFLRNNSLLKLSIYNTSFSgTIPNSiSNLKHLTSLKLQQSAFSGRIPSSLRSLSHLSNLVLSENNFVGEIPSSVSNLKQ 351
Cdd:COG4886  244 PELGNLTNLEELDLSNNQLT-DLPPL-ANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLT 321

                        250       260
                 ....*....|....*....|....*
gi 332193999 352 LTLFDVSDNNLNGNFPSSLLNLNQL 376
Cdd:COG4886  322 TLLLLLLLLKGLLVTLTTLALSLSL 346
PLN03150 PLN03150
hypothetical protein; Provisional
 809-873 3.15e-10

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 64.07  E-value: 3.15e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 332193999 809 IDFAGNKIQGKIPESVGILKELHVLNLSSNAFTGHIPSSLANLTNLESLDISQNKIGGEIPPELG 873
Cdd:PLN03150 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
PLN03150 PLN03150
hypothetical protein; Provisional
 833-894 4.71e-10

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 63.30  E-value: 4.71e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 332193999 833 LNLSSNAFTGHIPSSLANLTNLESLDISQNKIGGEIPPELGTLSSLEWINVSHNQLVGSIPQ 894
Cdd:PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484
PLN03150 PLN03150
hypothetical protein; Provisional
 620-712 7.17e-10

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 62.91  E-value: 7.17e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 620 LDLSNNNLHGLIPRCLeAQMSSLSVLNLRNNSLDGSLPNIFMNAKVLSSLDVSHNTLEGKLPASLAGCSALEILNVESNN 699
Cdd:PLN03150 423 LGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

                         90
                 ....*....|...
gi 332193999 700 INDTFPFWLNSLP 712
Cdd:PLN03150 502 LSGRVPAALGGRL 514
PLN03150 PLN03150
hypothetical protein; Provisional
 340-418 1.33e-09

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 62.14  E-value: 1.33e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 332193999 340 GEIPSSVSNLKQLTLFDVSDNNLNGNFPSSLLNLNQLRYIDICSNHFTGFLPPTISQLSNLEFFSACDNSFTGSIPSSL 418
Cdd:PLN03150 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510
PLN03150 PLN03150
hypothetical protein; Provisional
 283-391 3.99e-09

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 60.60  E-value: 3.99e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 283 LSIYNTSFSGTIPNSISNLKHLTSLKlqqsafsgripsslrslshlsnlvLSENNFVGEIPSSVSNLKQLTLFDVSDNNL 362
Cdd:PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSIN------------------------LSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

                         90       100
                 ....*....|....*....|....*....
gi 332193999 363 NGNFPSSLLNLNQLRYIDICSNHFTGFLP 391
Cdd:PLN03150 479 NGSIPESLGQLTSLRILNLNGNSLSGRVP 507
PLN03150 PLN03150
hypothetical protein; Provisional
 81-174 1.39e-08

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 58.67  E-value: 1.39e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999  81 NSDCCY-----WDGITC--DTKSGK--VTGLDLSCSCLHGRLePNSsLFRLQHLQSVNLAyNNFTNSPIPAEFSKFMRLE 151
Cdd:PLN03150 393 NGDPCVpqqhpWSGADCqfDSTKGKwfIDGLGLDNQGLRGFI-PND-ISKLRHLQSINLS-GNSIRGNIPPSLGSITSLE 469

                         90       100
                 ....*....|....*....|...
gi 332193999 152 RLNLSRSSFSGHISIKLLQLTNL 174
Cdd:PLN03150 470 VLDLSYNSFNGSIPESLGQLTSL 492
PLN03150 PLN03150
hypothetical protein; Provisional
 645-728 6.19e-08

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 56.75  E-value: 6.19e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 645 LNLRNNSLDGSLPNIFMNAKVLSSLDVSHNTLEGKLPASLAGCSALEILNVESNNINDTFPFWLNSLPKLQVLVLRSNNF 724
Cdd:PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502


                 ....
gi 332193999 725 RGTL 728
Cdd:PLN03150 503 SGRV 506
PLN03150 PLN03150
hypothetical protein; Provisional
 523-651 2.35e-07

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 54.82  E-value: 2.35e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 523 LSSIDLSNNNIKGQVPNWLWRLPELSTVDLSNNSLIG-FNGSLKALSGskIVMLDLSsnafqgplfmpprgiqyflgsYN 601
Cdd:PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGnIPPSLGSITS--LEVLDLS---------------------YN 476

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 332193999 602 NFTGYIPPSICGLANPLILDLSNNNLHGLIPRCLEAQMSSLSVLNLRNNS 651
Cdd:PLN03150 477 SFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526
PLN03150 PLN03150
hypothetical protein; Provisional
 388-435 4.29e-07

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 54.05  E-value: 4.29e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 332193999 388 GFLPPTISQLSNLEFFSACDNSFTGSIPSSLFNISSLTTLGLSYNQLN 435
Cdd:PLN03150 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479
LRRNT_2 pfam08263
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ...
 37-93 3.62e-06

Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.


Pssm-ID: 462411 [Multi-domain]  Cd Length: 41  Bit Score: 44.59  E-value: 3.62e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 332193999   37 HPDQRDALLEFKNEFKiwYPNGFLdidgvlmdvtsypktKSWT-KNSDCCYWDGITCD 93
Cdd:pfam08263   1 LNDDGQALLAFKSSLN--DPPGAL---------------SSWNsSSSDPCSWTGVTCD 41
PLN03150 PLN03150
hypothetical protein; Provisional
 359-434 5.93e-06

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 50.20  E-value: 5.93e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 332193999 359 DNN-LNGNFPSSLLNLNQLRYIDICSNHFTGFLPPTISQLSNLEFFSACDNSFTGSIPSSLFNISSLTTLGLSYNQL 434
Cdd:PLN03150 426 DNQgLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502
LRR_8 pfam13855
Leucine rich repeat;
829-888 1.25e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 43.67  E-value: 1.25e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999  829 ELHVLNLSSNAFTGHIPSSLANLTNLESLDISQNKIGGEIPPELGTLSSLEWINVSHNQL 888
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
640-700 3.54e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 42.51  E-value: 3.54e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 332193999  640 SSLSVLNLRNNSLDGSLPNIFMNAKVLSSLDVSHNTLEGKLPASLAGCSALEILNVESNNI 700
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 207-428 5.88e-05

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 47.18  E-value: 5.88e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999  207 NLRELDMSSVDISSAIPIEFSYMWSLRSLTLKGCNLLGRFPNSVllipNLESIsldHNLNLEG-----SLPNFLRNNSLL 281
Cdd:PLN03210  658 NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI----NLKSL---YRLNLSGcsrlkSFPDISTNISWL 730

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999  282 KLsiYNTSFSgTIPNS--ISNLKHLTSLKLQQSAFSGRI----PSSLRSLSHLSNLVLSENNFVGEIPSSVSNLKQLTLF 355
Cdd:PLN03210  731 DL--DETAIE-EFPSNlrLENLDELILCEMKSEKLWERVqpltPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHL 807

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999  356 DVSD-NNLNG-----NFPsSLLNLN-----QLR-YIDICSNHFTGFLPPT--------ISQLSNLEFFS--ACDNSFTGS 413
Cdd:PLN03210  808 EIENcINLETlptgiNLE-SLESLDlsgcsRLRtFPDISTNISDLNLSRTgieevpwwIEKFSNLSFLDmnGCNNLQRVS 886

                         250
                  ....*....|....*
gi 332193999  414 IpsslfNISSLTTLG 428
Cdd:PLN03210  887 L-----NISKLKHLE 896
LRR_8 pfam13855
Leucine rich repeat;
498-557 6.58e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 41.74  E-value: 6.58e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 332193999  498 SHLEYLELSGCNIIEF-PEFIRNQRNLSSIDLSNNNIKGQVPNWLWRLPELSTVDLSNNSL 557
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLdDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PLN03150 PLN03150
hypothetical protein; Provisional
 513-584 7.84e-05

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 46.73  E-value: 7.84e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 332193999 513 FPEFIRNQRNLSSIDLSNNNIKGQVPNWLWRLPELSTVDLSNNSligFNGSLKALSG--SKIVMLDLSSNAFQG 584
Cdd:PLN03150 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS---FNGSIPESLGqlTSLRILNLNGNSLSG 504
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 602-725 9.80e-05

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 45.42  E-value: 9.80e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 602 NFTGYIPPS----ICGL-ANPLI--LDLSNNNLHGLIPRCLEA--QMSSLSVLNLRNNSLDG--------SLPNIFMNak 664
Cdd:cd00116   61 NETGRIPRGlqslLQGLtKGCGLqeLDLSDNALGPDGCGVLESllRSSSLQELKLNNNGLGDrglrllakGLKDLPPA-- 138

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 332193999 665 vLSSLDVSHNTLEGKLPASLAG----CSALEILNVESNNINDT-FPFWLNSLP---KLQVLVLRSNNFR 725
Cdd:cd00116  139 -LEKLVLGRNRLEGASCEALAKalraNRDLKELNLANNGIGDAgIRALAEGLKancNLEVLDLNNNGLT 206
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 515-750 1.78e-04

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 44.65  E-value: 1.78e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 515 EFIRNQRNLSSIDLSNNNIKG----QVPNWLWRLPELSTVDLSNNSLIGFNGSLKAL-----SGSKIVMLDLSSNAFQGP 585
Cdd:cd00116   17 ELLPKLLCLQVLRLEGNTLGEeaakALASALRPQPSLKELCLSLNETGRIPRGLQSLlqgltKGCGLQELDLSDNALGPD 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 586 LfmpPRGIQYFLGSYNnftgyippsicgLANpliLDLSNNNLHG----LIPRCLEAQMSSLSVLNLRNNSLDG----SLP 657
Cdd:cd00116   97 G---CGVLESLLRSSS------------LQE---LKLNNNGLGDrglrLLAKGLKDLPPALEKLVLGRNRLEGasceALA 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 658 NIFMNAKVLSSLDVSHNTLEG----KLPASLAGCSALEILNVESNNINDT----FPFWLNSLPKLQVLVLRSNNFR--GT 727
Cdd:cd00116  159 KALRANRDLKELNLANNGIGDagirALAEGLKANCNLEVLDLNNNGLTDEgasaLAETLASLKSLEVLNLGDNNLTdaGA 238

                        250       260
                 ....*....|....*....|...
gi 332193999 728 LHNVDGVWFGFPLLRITDVSHND 750
Cdd:cd00116  239 AALASALLSPNISLLTLSLSCND 261
LRR_8 pfam13855
Leucine rich repeat;
690-751 2.43e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 39.82  E-value: 2.43e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 332193999  690 LEILNVESNNINDTFPFWLNSLPKLQVLVLRSNNfrgtLHNVDGVWF-GFPLLRITDVSHNDF 751
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNL----LTTLSPGAFsGLPSLRYLDLSGNRL 61
PLN03150 PLN03150
hypothetical protein; Provisional
 256-360 2.61e-04

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 44.81  E-value: 2.61e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 256 LESISLDhNLNLEGSLPNFL-RNNSLLKLSIYNTSFSGTIPNSISNLKHLTSLKLQQSAFSGRIPSSLRSLSHLSNLVLS 334
Cdd:PLN03150 420 IDGLGLD-NQGLRGFIPNDIsKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498

                         90       100
                 ....*....|....*....|....*..
gi 332193999 335 ENNFVGEIPSSV-SNLKQLTLFDVSDN 360
Cdd:PLN03150 499 GNSLSGRVPAALgGRLLHRASFNFTDN 525
LRR_8 pfam13855
Leucine rich repeat;
619-674 5.29e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 39.04  E-value: 5.29e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 332193999  619 ILDLSNNNLHGLIPRCLEaQMSSLSVLNLRNNSLDGSLPNIFMNAKVLSSLDVSHN 674
Cdd:pfam13855   5 SLDLSNNRLTSLDDGAFK-GLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGN 59
PLN03150 PLN03150
hypothetical protein; Provisional
 222-319 8.50e-04

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 43.27  E-value: 8.50e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 222 IPIEFSYMWSLRSLTLKGCNLLGRFPNSVLLIPNLESISLDHNlnlegslpnflrnnsllklsiyntSFSGTIPNSISNL 301
Cdd:PLN03150 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN------------------------SFNGSIPESLGQL 489

                         90
                 ....*....|....*...
gi 332193999 302 KHLTSLKLQQSAFSGRIP 319
Cdd:PLN03150 490 TSLRILNLNGNSLSGRVP 507
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 205-554 1.10e-03

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 42.94  E-value: 1.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999  205 FMNLRELDMSSVDISSAIPiEFSYMWSLRSLTLKGCNLLGRFPNSVLLIPNLESISLDHNLNLEgSLPNFLRNNSLLKLS 284
Cdd:PLN03210  633 LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE-ILPTGINLKSLYRLN 710

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999  285 IYNTSFSGTIPNSISNLkhlTSLKLQQSAfsgripsslrslshlsnlvlsennfVGEIPSSV--SNLKQLTLFDVSDNNL 362
Cdd:PLN03210  711 LSGCSRLKSFPDISTNI---SWLDLDETA-------------------------IEEFPSNLrlENLDELILCEMKSEKL 762

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999  363 NGNFpssllnlnQLRyidicsNHFTGFLPPTISQLsnleFFSacDNSFTGSIPSSLFNISSLTTLGLSynqlndttNIKN 442
Cdd:PLN03210  763 WERV--------QPL------TPLMTMLSPSLTRL----FLS--DIPSLVELPSSIQNLHKLEHLEIE--------NCIN 814

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999  443 IsllhnlqrllldnnnfkasqVDLDVFLSLKRLVSLALSGiplsTTNITSDSEFSSHLEYLELSGCNIIEFPEFIRNQRN 522
Cdd:PLN03210  815 L--------------------ETLPTGINLESLESLDLSG----CSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSN 870

                         330       340       350
                  ....*....|....*....|....*....|...
gi 332193999  523 LSSIDLSN-NNIKGQVPNwLWRLPELSTVDLSN 554
Cdd:PLN03210  871 LSFLDMNGcNNLQRVSLN-ISKLKHLETVDFSD 902
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 821-886 1.19e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 41.31  E-value: 1.19e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 332193999 821 PESV-GILKELHVLNLSSNAFTghIPSSLANLTNLESLDISQNKIG--GEIPPELGTLSSLEWINVSHN 886
Cdd:cd21340  112 PRSLaALSNSLRVLNISGNNID--SLEPLAPLRNLEQLDASNNQISdlEELLDLLSSWPSLRELDLTGN 178
LRR_8 pfam13855
Leucine rich repeat;
666-724 1.59e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 37.50  E-value: 1.59e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 332193999  666 LSSLDVSHNTLEGKLPASLAGCSALEILNVESNNINDTFPFWLNSLPKLQVLVLRSNNF 724
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 497-572 2.31e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 40.54  E-value: 2.31e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332193999 497 SSHLEYLELSGCNIIEfPEFIRNQRNLSSIDLSNNNIK--GQVPNWLWRLPELSTVDLSNN----------SLIGFNGSL 564
Cdd:cd21340  119 SNSLRVLNISGNNIDS-LEPLAPLRNLEQLDASNNQISdlEELLDLLSSWPSLRELDLTGNpvckkpkyrdKIILASKSL 197


                 ....*...
gi 332193999 565 KALSGSKI 572
Cdd:cd21340  198 EVLDGKEI 205
LRR_8 pfam13855
Leucine rich repeat;
521-582 5.29e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 36.35  E-value: 5.29e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 332193999  521 RNLSSIDLSNNNIKGQVPNWLWRLPELSTVDLSNNSLIGFNGslKALSG-SKIVMLDLSSNAF 582
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSP--GAFSGlPSLRYLDLSGNRL 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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