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Conserved domains on  [gi|335390259|gb|AEH57818|]
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peptidoglycan-associated lipoprotein OprL, partial [Pseudomonas thivervalensis]

Protein Classification

OmpA family protein( domain architecture ID 1000806)

OmpA family membrane protein acts as a porin with low permeability that allows slow penetration of small solutes, similar to peptidoglycan-associated lipoprotein that is involved in maintenance of the integrity of the cell cell envelope

CATH:  3.30.1330.60
Gene Ontology:  GO:0042834|GO:0015288
SCOP:  4001470
TCDB:  1.B.6

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OmpA_C-like super family cl30079
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 63-156 8.40e-52

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


The actual alignment was detected with superfamily member TIGR02802:

Pssm-ID: 453091 [Multi-domain]  Cd Length: 104  Bit Score: 160.03  E-value: 8.40e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 335390259   63 TFYFEYDSSDLKPEAMRALDVHAKDLKAN-GARVVLEGNTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYG 141
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNpSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90
                  ....*....|....*
gi 335390259  142 EERPVATGND*QSWA 156
Cdd:TIGR02802  81 KEKPAALGHDEAAWA 95
 
Name Accession Description Interval E-value
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 63-156 8.40e-52

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 160.03  E-value: 8.40e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 335390259   63 TFYFEYDSSDLKPEAMRALDVHAKDLKAN-GARVVLEGNTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYG 141
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNpSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90
                  ....*....|....*
gi 335390259  142 EERPVATGND*QSWA 156
Cdd:TIGR02802  81 KEKPAALGHDEAAWA 95
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 61-156 8.76e-36

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 119.58  E-value: 8.76e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 335390259  61 ITTFYFEYDSSDLKPEAMRALDVHAKDLKAN-GARVVLEGNTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVS 139
Cdd:cd07185    1 LITIYFDFGSAELTPEAKPLLDKLAEVLKKNpDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVG 80

                         90
                 ....*....|....*..
gi 335390259 140 YGEERPVATGND*QSWA 156
Cdd:cd07185   81 YGESRPIASNDTEEGRA 97
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 25-156 9.65e-35

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 122.58  E-value: 9.65e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 335390259  25 KGGDNAGEGAVDPNAGYGANTGAVDGSLSEEAALRAITTFYFEYDSSDLKPEAMRALDVHAKDLKAN-GARVVLEGNTDE 103
Cdd:COG2885  150 KALGDSAAAALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENpDLRIEIEGHTDS 229

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 335390259 104 RGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYGEERPVATGND*QSWA 156
Cdd:COG2885  230 RGSDAYNLALSERRAEAVKDYLVSKGIPASRITAVGYGESRPVASNDTEEGRA 282
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
22-156 8.50e-33

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 114.20  E-value: 8.50e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 335390259  22 CSSKGGDNAGEGAVDPNAGYGANTGAVDGSLS-EEAA------LRAITTFYFEYDSSDLKPEAMRALDVHAKDLKANGA- 93
Cdd:PRK10802  22 CSSNKNASNDQSEGMLGAGTGMDANGGNGNMSsEEQArlqmqqLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSy 101

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 335390259  94 RVVLEGNTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYGEERPVATGND*QSWA 156
Cdd:PRK10802 102 KVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYA 164
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 66-150 2.12e-25

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 92.81  E-value: 2.12e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 335390259   66 FEYDSSDLKPEAMRALDVHAKDLKANGAR--VVLEGNTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYGEE 143
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKntITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80


                  ....*..
gi 335390259  144 RPVATGN 150
Cdd:pfam00691  81 KPITDNK 87
 
Name Accession Description Interval E-value
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 63-156 8.40e-52

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 160.03  E-value: 8.40e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 335390259   63 TFYFEYDSSDLKPEAMRALDVHAKDLKAN-GARVVLEGNTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYG 141
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNpSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90
                  ....*....|....*
gi 335390259  142 EERPVATGND*QSWA 156
Cdd:TIGR02802  81 KEKPAALGHDEAAWA 95
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 61-156 8.76e-36

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 119.58  E-value: 8.76e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 335390259  61 ITTFYFEYDSSDLKPEAMRALDVHAKDLKAN-GARVVLEGNTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVS 139
Cdd:cd07185    1 LITIYFDFGSAELTPEAKPLLDKLAEVLKKNpDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVG 80

                         90
                 ....*....|....*..
gi 335390259 140 YGEERPVATGND*QSWA 156
Cdd:cd07185   81 YGESRPIASNDTEEGRA 97
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 25-156 9.65e-35

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 122.58  E-value: 9.65e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 335390259  25 KGGDNAGEGAVDPNAGYGANTGAVDGSLSEEAALRAITTFYFEYDSSDLKPEAMRALDVHAKDLKAN-GARVVLEGNTDE 103
Cdd:COG2885  150 KALGDSAAAALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENpDLRIEIEGHTDS 229

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 335390259 104 RGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYGEERPVATGND*QSWA 156
Cdd:COG2885  230 RGSDAYNLALSERRAEAVKDYLVSKGIPASRITAVGYGESRPVASNDTEEGRA 282
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
22-156 8.50e-33

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 114.20  E-value: 8.50e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 335390259  22 CSSKGGDNAGEGAVDPNAGYGANTGAVDGSLS-EEAA------LRAITTFYFEYDSSDLKPEAMRALDVHAKDLKANGA- 93
Cdd:PRK10802  22 CSSNKNASNDQSEGMLGAGTGMDANGGNGNMSsEEQArlqmqqLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSy 101

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 335390259  94 RVVLEGNTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYGEERPVATGND*QSWA 156
Cdd:PRK10802 102 KVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYA 164
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 66-150 2.12e-25

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 92.81  E-value: 2.12e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 335390259   66 FEYDSSDLKPEAMRALDVHAKDLKANGAR--VVLEGNTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYGEE 143
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKntITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80


                  ....*..
gi 335390259  144 RPVATGN 150
Cdd:pfam00691  81 KPITDNK 87
MotB COG1360
Flagellar motor protein MotB [Cell motility];
66-156 2.12e-14

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 66.41  E-value: 2.12e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 335390259  66 FEYDSSDLKPEAMRALDVHAKDLKANGARVVLEGNTDER--GTREY--NMALGERRAKAVQRYLVLQGVSPAQLELVSYG 141
Cdd:COG1360   63 FDSGSAELTPEGRELLDKIAAVLAEVPNRIRVEGHTDNVpiSTARFpsNWELSAARAAAVVRYLIEGGVPPERLSAVGYG 142

                         90
                 ....*....|....*
gi 335390259 142 EERPVATGND*QSWA 156
Cdd:COG1360  143 DTRPLAPNDTPEGRA 157
PRK10808 PRK10808
outer membrane protein A; Reviewed
 66-150 1.42e-10

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 58.16  E-value: 1.42e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 335390259  66 FEYDSSDLKPEAMRALDVHAKDLKA----NGARVVLeGNTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYG 141
Cdd:PRK10808 228 FNFNKATLKPEGQQALDQLYSQLSNldpkDGSVVVL-GYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISARGMG 306


                 ....*....
gi 335390259 142 EERPVaTGN 150
Cdd:PRK10808 307 KSNPV-TGN 314
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 66-151 1.57e-07

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 49.24  E-value: 1.57e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 335390259  66 FEYDSSDLKPEAMRALDVHAKDLKANGARVVLEGNTDER--GTREY--NMALGERRAKAVQRYLVLQGVSPAQLELVSYG 141
Cdd:PRK09038 137 FGSGDAMLSDQAFAILEKVAEVLKPAPNPIHVEGFTDNVpiATAQFpsNWELSAARAASVVRLLADDGVAPSRLAAVGYG 216

                         90
                 ....*....|
gi 335390259 142 EERPVAtGND 151
Cdd:PRK09038 217 EFQPVA-DND 225
PRK10510 PRK10510
OmpA family lipoprotein;
66-148 1.67e-07

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 48.72  E-value: 1.67e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 335390259  66 FEYDSSDLKPEAMRALDVHAKDLKA-NGARVVLEGNTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYGEER 144
Cdd:PRK10510 116 FDSSSATLKPAGANTLTGVAMVLKEyPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRTQGMGPAN 195


                 ....
gi 335390259 145 PVAT 148
Cdd:PRK10510 196 PIAS 199
motB PRK08457
flagellar motor protein MotB; Reviewed
 99-154 4.61e-06

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 44.71  E-value: 4.61e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 335390259  99 GNTDERGTR-EYNMALGERRAKAVQRYLVLQGVSPAQLELVSYGEERPVAtGND*QS 154
Cdd:PRK08457 165 DNSPLNKSRyKDHYELAAARAYNVMKVLIQYGINPNRLSFSSYGSNNPIA-PNDSLE 220
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 61-156 2.16e-05

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 42.74  E-value: 2.16e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 335390259  61 ITTFYFEYDSSDLKPEAMRALDVHAKDLKANGARVVLEGNTDERGTRE----YNMALGERRAKAVQRYLV-LQGVSPAQL 135
Cdd:PRK06742 114 VDNLIFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHTDSRPIHNdkfpSNWELSSARAANMIHHLIeVYNVDDKRL 193

                         90       100
                 ....*....|....*....|.
gi 335390259 136 ELVSYGEERPVATGND*QSWA 156
Cdd:PRK06742 194 AAVGYADTKPVVPNDSPQNWE 214
PRK09967 PRK09967
OmpA family protein;
21-156 1.89e-04

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 39.58  E-value: 1.89e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 335390259  21 GCSSKGGDNAGEgAVDPNAGYGANTGAVDGSLSEEAALraittfYFEYDSSDLKPEAMRALDVHAKDLKANG---ARvvL 97
Cdd:PRK09967  18 GCQSPQGKFTPE-QVAAMQSYGFTESAGDWSLGLSDAI------LFAKNDYKLLPESQQQIQTMAAKLASTGlthAR--M 88

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 335390259  98 EGNTDERGTREYNMALGERRAKAVQRYLVLQGVSP-AQLELVSYGEERPVATGND*QSWA 156
Cdd:PRK09967  89 DGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPrSNLTTQGLGKKYPIASNKTAQGRA 148
PRK09039 PRK09039
peptidoglycan -binding protein;
66-150 1.95e-04

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 40.33  E-value: 1.95e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 335390259  66 FEYDSSDLKPEAMRALDVHAKDLKANGARV------VL--EGNTDER---GTREY--NMALGERRAKAVQRYLVLQGVSP 132
Cdd:PRK09039 228 FPTGSAELNPEGQAEIAKLAAALIELAKEIppeinwVLrvDGHTDNVplsGTGRFrdNWELSSARAISVVKFLIALGVPA 307

                         90
                 ....*....|....*...
gi 335390259 133 AQLELVSYGEERPVATGN 150
Cdd:PRK09039 308 DRLAAAGFGEFQPLDPGD 325
PRK06925 PRK06925
flagellar motor protein MotB;
54-147 2.03e-04

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 40.13  E-value: 2.03e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 335390259  54 EEAALraittfyFEYDSSDLKPEAMRALDVHAKDLKANGARVVLEGNTDERGTREY----NMALGERRAKAVQRYLV-LQ 128
Cdd:PRK06925 117 QEAVL-------FETGEADILKQAEPFLHKIGVLLSTIPNDIKVEGHTDSRPISTYrypsNWELSAARASSVIRYFTsKE 189

                         90
                 ....*....|....*....
gi 335390259 129 GVSPAQLELVSYGEERPVA 147
Cdd:PRK06925 190 KLDSSRFIAVGYADTKPVV 208
PRK09040 PRK09040
hypothetical protein; Provisional
 66-156 5.97e-04

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 38.46  E-value: 5.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 335390259  66 FEYDSSDLKPEAMRALDVHAKDLKAN-GAR---VVLEGNTDER----GTREY--NMALGERRAKAVQRYLVLQGVSPAQL 135
Cdd:PRK09040  92 FALNSDQLQPEGRELLKSLAGPLAAYlRARdeiLMVSGFTDDQpvraGNRRFadNWELSAQRALTVTRALIDAGVPASSV 171

                         90       100
                 ....*....|....*....|.
gi 335390259 136 ELVSYGEERPVATGND*QSWA 156
Cdd:PRK09040 172 FAAAFGSEQPVASNADDEGRA 192
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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