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Conserved domains on  [gi|338856369|gb|AEJ32463|]
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cytochrome b6, partial [Synechococcus sp. A15-43]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
petB super family cl30867
cytochrome b6
 1-186 1.76e-131

cytochrome b6


The actual alignment was detected with superfamily member CHL00070:

Pssm-ID: 177009  Cd Length: 215  Bit Score: 367.12  E-value: 1.76e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369   1 LEIQDIADDISSKYVPPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSAS 80
Cdd:CHL00070  12 LEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSAS 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  81 MMVLMLILHVFRVYLTGGFKRPRELTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRG 160
Cdd:CHL00070  92 MMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRG 171

                        170       180
                 ....*....|....*....|....*.
gi 338856369 161 GESVGQSTLTRFYSLHTFVMPWLLAV 186
Cdd:CHL00070 172 SVSVGQSTLTRFYSLHTFVLPLLTAV 197
 
Name Accession Description Interval E-value
petB CHL00070
cytochrome b6
 1-186 1.76e-131

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 367.12  E-value: 1.76e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369   1 LEIQDIADDISSKYVPPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSAS 80
Cdd:CHL00070  12 LEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSAS 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  81 MMVLMLILHVFRVYLTGGFKRPRELTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRG 160
Cdd:CHL00070  92 MMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRG 171

                        170       180
                 ....*....|....*....|....*.
gi 338856369 161 GESVGQSTLTRFYSLHTFVMPWLLAV 186
Cdd:CHL00070 172 SVSVGQSTLTRFYSLHTFVLPLLTAV 197
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 3-186 6.82e-81

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 238.42  E-value: 6.82e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369   3 IQDIADDISSKYVPPHVNI--FYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSAS 80
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNIsyWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  81 MMVLMLILHVFRVYLTGGFKRPRELTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRG 160
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180
                 ....*....|....*....|....*.
gi 338856369 161 GESVGQSTLTRFYSLHtFVMPWLLAV 186
Cdd:cd00284  161 GFSVDNATLTRFFALH-FLLPFIIAV 185
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-186 6.38e-75

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 229.68  E-value: 6.38e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369   1 LEIQDIADDISSKYVPPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSAS 80
Cdd:COG1290   18 LPLASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  81 MMVLMLILHVFRVYLTGGFKRPRELTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRG 160
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGAYKKPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180
                 ....*....|....*....|....*.
gi 338856369 161 GESVGQSTLTRFYSLHTFVMPWLLAV 186
Cdd:COG1290  178 GEFPGDATLNRFFALHVLLLPALLLA 203
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
10-186 7.44e-75

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 223.03  E-value: 7.44e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369   10 ISSKYVPPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSASMMVLMLILH 89
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369   90 VFRVYLTGGFKRPRELTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRGGESVGQSTL 169
Cdd:pfam00033  81 IFRGLYYGGFSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170
                  ....*....|....*..
gi 338856369  170 TRFYSLHtFVMPWLLAV 186
Cdd:pfam00033 161 TRFFSLH-FLLPFILAI 176
cytb_ExtP NF040969
selenite/tellurite reduction operon b-type cytochrome ExtP;
4-186 2.91e-67

selenite/tellurite reduction operon b-type cytochrome ExtP;


Pssm-ID: 468899  Cd Length: 205  Bit Score: 204.06  E-value: 2.91e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369   4 QDIADDISSKYVPP---HVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSAS 80
Cdd:NF040969   3 NDLALHLVPRHVPRralKFSYTWCLGGLTFLLFVILTVTGIFLMFYYVPTPEAAYESVQYLQNEVAFGQLVRNMHHWAAN 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  81 MMVLMLILHVFRVYLTGGFKRPRELTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRG 160
Cdd:NF040969  83 LMVVMVFLHMLRVFYTGSYKPPREFNWVVGVGLLVLTLGLSFTGYLLPWDQLAYWAVTVGTNIAGSIPVVGTLLQLLQLG 162

                        170       180
                 ....*....|....*....|....*.
gi 338856369 161 GESVGQSTLTRFYSLHTFVMPWLLAV 186
Cdd:NF040969 163 GSEVGAATLTRFYALHVFVLPAALII 188
 
Name Accession Description Interval E-value
petB CHL00070
cytochrome b6
 1-186 1.76e-131

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 367.12  E-value: 1.76e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369   1 LEIQDIADDISSKYVPPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSAS 80
Cdd:CHL00070  12 LEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSAS 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  81 MMVLMLILHVFRVYLTGGFKRPRELTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRG 160
Cdd:CHL00070  92 MMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRG 171

                        170       180
                 ....*....|....*....|....*.
gi 338856369 161 GESVGQSTLTRFYSLHTFVMPWLLAV 186
Cdd:CHL00070 172 SVSVGQSTLTRFYSLHTFVLPLLTAV 197
PRK03735 PRK03735
cytochrome b6; Provisional
 1-186 8.42e-119

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 335.53  E-value: 8.42e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369   1 LEIQDIADDISSKYVPPHVN-------IFYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRS 73
Cdd:PRK03735  13 LDITPIWRDIADHEVPEHVNpahhfsaFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRG 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  74 VHRWSASMMVLMLILHVFRVYLTGGFKRPRELTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDF 153
Cdd:PRK03735  93 MHHWGASLVIVMMFLHTLRVFFTGGYKKPRELNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDF 172

                        170       180       190
                 ....*....|....*....|....*....|...
gi 338856369 154 MVELLRGGESVGQSTLTRFYSLHTFVMPWLLAV 186
Cdd:PRK03735 173 IKTLLRGGEIVGAQTLTRFFAIHVFFLPWALAV 205
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 3-186 6.82e-81

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 238.42  E-value: 6.82e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369   3 IQDIADDISSKYVPPHVNI--FYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSAS 80
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNIsyWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  81 MMVLMLILHVFRVYLTGGFKRPRELTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRG 160
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180
                 ....*....|....*....|....*.
gi 338856369 161 GESVGQSTLTRFYSLHtFVMPWLLAV 186
Cdd:cd00284  161 GFSVDNATLTRFFALH-FLLPFIIAV 185
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-186 6.38e-75

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 229.68  E-value: 6.38e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369   1 LEIQDIADDISSKYVPPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSAS 80
Cdd:COG1290   18 LPLASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  81 MMVLMLILHVFRVYLTGGFKRPRELTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRG 160
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGAYKKPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180
                 ....*....|....*....|....*.
gi 338856369 161 GESVGQSTLTRFYSLHTFVMPWLLAV 186
Cdd:COG1290  178 GEFPGDATLNRFFALHVLLLPALLLA 203
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
10-186 7.44e-75

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 223.03  E-value: 7.44e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369   10 ISSKYVPPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSASMMVLMLILH 89
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369   90 VFRVYLTGGFKRPRELTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRGGESVGQSTL 169
Cdd:pfam00033  81 IFRGLYYGGFSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170
                  ....*....|....*..
gi 338856369  170 TRFYSLHtFVMPWLLAV 186
Cdd:pfam00033 161 TRFFSLH-FLLPFILAI 176
cytb_ExtP NF040969
selenite/tellurite reduction operon b-type cytochrome ExtP;
4-186 2.91e-67

selenite/tellurite reduction operon b-type cytochrome ExtP;


Pssm-ID: 468899  Cd Length: 205  Bit Score: 204.06  E-value: 2.91e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369   4 QDIADDISSKYVPP---HVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSAS 80
Cdd:NF040969   3 NDLALHLVPRHVPRralKFSYTWCLGGLTFLLFVILTVTGIFLMFYYVPTPEAAYESVQYLQNEVAFGQLVRNMHHWAAN 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  81 MMVLMLILHVFRVYLTGGFKRPRELTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRG 160
Cdd:NF040969  83 LMVVMVFLHMLRVFYTGSYKPPREFNWVVGVGLLVLTLGLSFTGYLLPWDQLAYWAVTVGTNIAGSIPVVGTLLQLLQLG 162

                        170       180
                 ....*....|....*....|....*.
gi 338856369 161 GESVGQSTLTRFYSLHTFVMPWLLAV 186
Cdd:NF040969 163 GSEVGAATLTRFYALHVFVLPAALII 188
CYTB MTH00145
cytochrome b; Provisional
 15-185 2.32e-35

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 126.94  E-value: 2.32e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  15 VPPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSASMMVLMLILHVFRVY 94
Cdd:MTH00145  24 APVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGL 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  95 LTGGFKRPRelTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRGGESVGQSTLTRFYS 174
Cdd:MTH00145 104 YYGSYLMQH--TWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFS 181

                        170
                 ....*....|.
gi 338856369 175 LHtFVMPWLLA 185
Cdd:MTH00145 182 LH-FLLPFVIL 191
CYTB MTH00224
cytochrome b; Provisional
 16-184 1.18e-33

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 122.72  E-value: 1.18e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  16 PPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSASMMVLMLILHVFRVYL 95
Cdd:MTH00224  25 PNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  96 TGGFKRPRelTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRGGESVGQSTLTRFYSL 175
Cdd:MTH00224 105 YGSFNLSE--TWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSF 182


                 ....*....
gi 338856369 176 HtFVMPWLL 184
Cdd:MTH00224 183 H-FLLPFAI 190
CYTB MTH00016
cytochrome b; Validated
 15-186 2.61e-33

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 121.71  E-value: 2.61e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  15 VPPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSASMMVLMLILHVFRVY 94
Cdd:MTH00016  24 APSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGI 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  95 LTGGFKRPRelTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRGGESVGQSTLTRFYS 174
Cdd:MTH00016 104 YYGSYFLME--TWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFA 181

                        170
                 ....*....|..
gi 338856369 175 LHtFVMPWLLAV 186
Cdd:MTH00016 182 LH-FLLPFVIAA 192
CYTB MTH00156
cytochrome b; Provisional
 31-186 7.49e-33

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 119.89  E-value: 7.49e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  31 VCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSASMMVLMLILHVFRVYLTGGFKRPreLTWVTG 110
Cdd:MTH00156  29 LCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLK--HTWMSG 106

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 338856369 111 VTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRGGESVGQSTLTRFYSLHtFVMPWLLAV 186
Cdd:MTH00156 107 VIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFH-FLLPFIILA 181
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
80-186 7.87e-33

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 115.42  E-value: 7.87e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369   80 SMMVLMLILHVFRVYLTGGFKRPRELTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLR 159
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100
                  ....*....|....*....|....*..
gi 338856369  160 GGESVGQSTLTRFYSLHTFVMPWLLAV 186
Cdd:pfam13631  81 GGPFPGTATIPRFYALHILLLPGLILA 107
CYTB MTH00191
cytochrome b; Provisional
 15-186 3.80e-31

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 115.78  E-value: 3.80e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  15 VPPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSASMMVLMLILHVFRVY 94
Cdd:MTH00191  20 SPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGL 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  95 LTGGFKRPRelTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRGGESVGQSTLTRFYS 174
Cdd:MTH00191 100 YYGSYLNKE--TWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFT 177

                        170
                 ....*....|..
gi 338856369 175 LHtFVMPWLLAV 186
Cdd:MTH00191 178 FH-FLLPFLIAA 188
CYTB MTH00119
cytochrome b; Provisional
 15-185 1.20e-30

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 114.61  E-value: 1.20e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  15 VPPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSASMMVLMLILHVFR-- 92
Cdd:MTH00119  24 TPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRgl 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  93 ---VYLtggFKRprelTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRGGESVGQSTL 169
Cdd:MTH00119 104 yygSYL---YKE----TWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTL 176

                        170
                 ....*....|....*.
gi 338856369 170 TRFYSLHtFVMPWLLA 185
Cdd:MTH00119 177 TRFFALH-FLLPFLIA 191
CYTB MTH00100
cytochrome b; Provisional
 16-185 8.50e-30

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 112.42  E-value: 8.50e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  16 PPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSASMMVLMLILHVFRVYL 95
Cdd:MTH00100  24 PSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLY 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  96 TGGFKRPRelTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRGGESVGQSTLTRFYSL 175
Cdd:MTH00100 104 YGSYLFLE--TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAF 181

                        170
                 ....*....|
gi 338856369 176 HtFVMPWLLA 185
Cdd:MTH00100 182 H-FILPFIIT 190
CYTB MTH00022
cytochrome b; Validated
 16-186 6.32e-28

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 107.48  E-value: 6.32e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  16 PPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSASMMVLMLILHVFRVYL 95
Cdd:MTH00022  23 PSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLY 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  96 TGGFKRPRelTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRGGESVGQSTLTRFYSL 175
Cdd:MTH00022 103 YGGYLKFH--VWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSL 180

                        170
                 ....*....|.
gi 338856369 176 HtFVMPWLLAV 186
Cdd:MTH00022 181 H-FLFPFILAF 190
CYTB MTH00034
cytochrome b; Validated
 16-186 8.32e-28

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 107.10  E-value: 8.32e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  16 PPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSASMMVLMLILHVFRVYL 95
Cdd:MTH00034  24 PSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLY 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  96 TGGFKRprELTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRGGESVGQSTLTRFYSL 175
Cdd:MTH00034 104 YGSYVN--IETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAF 181

                        170
                 ....*....|.
gi 338856369 176 HtFVMPWLLAV 186
Cdd:MTH00034 182 H-FLFPFIIAA 191
CYTB MTH00074
cytochrome b; Provisional
 31-185 8.75e-28

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 107.07  E-value: 8.75e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  31 VCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSASMMVLMLILHVFRVYLTGGFKRPRelTWVTG 110
Cdd:MTH00074  40 VCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKE--TWNIG 117

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 338856369 111 VTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRGGESVGQSTLTRFYSLHtFVMPWLLA 185
Cdd:MTH00074 118 VILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFH-FLLPFLIA 191
CYTB MTH00131
cytochrome b; Provisional
 16-185 1.36e-27

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 106.66  E-value: 1.36e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  16 PPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSASMMVLMLILHVFRVYL 95
Cdd:MTH00131  24 PSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLY 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  96 TGGFKRPRelTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRGGESVGQSTLTRFYSL 175
Cdd:MTH00131 104 YGSYLYKE--TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAF 181

                        170
                 ....*....|
gi 338856369 176 HtFVMPWLLA 185
Cdd:MTH00131 182 H-FLFPFVIA 190
CYTB MTH00033
cytochrome b; Provisional
 8-184 2.29e-27

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 105.79  E-value: 2.29e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369   8 DDISSKYVPPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSASMMVLMLI 87
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  88 LHVFRVYLTGGFKRPreLTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRGGESVGQS 167
Cdd:MTH00033  93 CHIGRGLYYGGYSRV--LTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNC 170

                        170
                 ....*....|....*..
gi 338856369 168 TLTRFYSLHtFVMPWLL 184
Cdd:MTH00033 171 TLNRFFSLH-YLLPFVL 186
CYTB MTH00053
cytochrome b; Provisional
 16-185 1.63e-26

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 103.63  E-value: 1.63e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  16 PPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSASMMVLMLILHVFRVYL 95
Cdd:MTH00053  25 PSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  96 TGGFKRprELTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRGGESVGQSTLTRFYSL 175
Cdd:MTH00053 105 YGSYTK--IIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSL 182

                        170
                 ....*....|
gi 338856369 176 HtFVMPWLLA 185
Cdd:MTH00053 183 H-YLLPFILA 191
CYTB MTH00086
cytochrome b; Provisional
 25-186 2.54e-25

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 100.01  E-value: 2.54e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  25 LGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSASMMVLMLILHVFRVYLTGGFKrpRE 104
Cdd:MTH00086  22 FGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYR--LK 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369 105 LTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRGGESVGQSTLTRFYSLHtFVMPWLL 184
Cdd:MTH00086 100 KVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLH-FLLPWGL 178


                 ..
gi 338856369 185 AV 186
Cdd:MTH00086 179 LV 180
CYTB MTH00046
cytochrome b; Validated
 19-176 3.87e-15

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 71.94  E-value: 3.87e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 338856369  19 VNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYLMTDVSFGWLIRSVHRWSASMMVLMLILHVFRVYLTGG 98
Cdd:MTH00046  18 LNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSS 97

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 338856369  99 FKRprELTWVTGVTMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDFMVELLRGGESVGQSTLTRFYSLH 176
Cdd:MTH00046  98 YSK--KGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVH 173
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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