|
Name |
Accession |
Description |
Interval |
E-value |
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
1-829 |
0e+00 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 783.53 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 1 MRKDVLLAFLMNQTDFFDPENVSEVFTARYLAQRFNMQRNTASHYLNQLVAQGVLCKINTRPVYFLHKQAFSQQFFTLSR 80
Cdd:COG1221 2 KRKEKILNYLKELTKNLSLEKKSEGFTAEEIAEKLGISRNNVSHELNELVKEGKLIKINGRPVLFLDKEAFEEQFGTKLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 81 NEYaSVAELLAHGEQECAPDDHFSLLIGHNESLKRPIEQLKTALFYPDGGLPLLMTGESGTGKSYLAQLMHEYAIAQALL 160
Cdd:COG1221 82 SEY-SFVELLAEKENNEEEEDPFDNLIGANGSLKNAIEQAKAAILYPPKGLHTLILGPTGVGKSFFAELMYEYAIEIGVL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 161 SPDAPFISFNCAQYASNPELLAANLFGYVKGAFTGAQSDRPGAFEAADGGMLFLDEVHRLSAEGQEKLFTWLDRGEIYRV 240
Cdd:COG1221 161 PEDAPFVVFNCADYANNPQLLMSQLFGYVKGAFTGADKDKEGLIEKADGGILFLDEVHRLPPEGQEMLFTFMDKGIYRRL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 241 GDTAQGHPVSVRLVFATTEEIHSTFLTTFLRRIPIQVNLPDLQHRSRQEKEALILLFFWTEAKKLSATLILKPRLLQILN 320
Cdd:COG1221 241 GETEKTRKANVRIIFATTEDPESSLLKTFLRRIPMVIKLPSLEERSLEERLELIKHFFKEEAKRLNKPIKVSKEVLKALL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 321 QYVYRGNVGELKNVVKYAVATAWAKKP--GQETVTVSLHDLPDAMLSALPSLNE--------SLADDTPVSITPDTNltW 390
Cdd:COG1221 321 LYDCPGNIGQLKSDIQLACAKAFLNYItnKKEEIEITLSDLPENVKKGLLKLKEnreeldklSEYLEEYLIISPDTE--K 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 391 LLRARDEMQGMIHDTQCHVLALYELVRSGKEGWETVQKRMGDEIEALFDRLIFTGDDNVHSQrlLLITSQVREEFYRLEK 470
Cdd:COG1221 399 KLISEEDEYELPYNFYEIIEDKYEELKSEGLSEEEINKIISKDIESYFKKLIFKLDKSNISE--ELLLIVVDEVIVNVVE 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 471 RFNMQLNGNCIYALSHYLIHRTALAPSRLNSEQIRQLDAFLAQKYPLLYSFCLQILETLGQKLDLEPRRID--------M 542
Cdd:COG1221 477 IFEEAEKKLLRYNSSNLFIALSLHLLSTLLRIKKGKKIINPQLNEIKKKYYEEFILAAEAIKIIEEELKILipdeeegfI 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 543 LLLALWLHKQGANNQKQVTHAVILAHGYATASSIANVANRLLKNTIFESFDMPLDVTPEAIAQQVMRYLEGHPLASGLMI 622
Cdd:COG1221 557 LLLLIELKEEKSLSENVIVVVVIAHGGAAASSSMAVVNLLLLEVAVAAIDDPPLEVVDVLIEEKTIVVIINKGKGGLLLL 636
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 623 LVDMGSLKAIHrhfdralsTPVTIINNVSTSMALYVGERILQGHFIEEIARDIARDVPVEYQLYWPKSNKPRAILTTCAT 702
Cdd:COG1221 637 LDDGGSLFGII--------IIEEEGIIIVTVVIVSTTTVLEAAARKKLLELDLDEIIVLEELLKNPLESKKIKISTSKKK 708
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 703 GIGVATNLCALLSASIPQALEIDVVACDYAMLASNKTQEPVFMRYDVLAIVGTLDPHIASVPWISLDSLISGEGNHYLMR 782
Cdd:COG1221 709 KIIVTTIAITTGEAGGILILILIIELLDKDLILIIIEILLIIIKEEILEKIIEEKKEVIIIVIISIIPLIIPPIILLLAL 788
|
810 820 830 840
....*....|....*....|....*....|....*....|....*..
gi 340763789 783 LFGSLTTPEQVAEINNLLLKNFSLRRVIESVTILDTSKVINHVEQFL 829
Cdd:COG1221 789 KLIILIEILVLLEILIDKEKIENIIKELLSLLNIIIVLLIIDILILI 835
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
106-285 |
5.74e-63 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 209.95 E-value: 5.74e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 106 LIGHNESLKRPIEQLKTALFYPdggLPLLMTGESGTGKSYLAQLMHEyaiaqalLSP--DAPFISFNCAqyASNPELLAA 183
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTD---APVLITGESGTGKELFARAIHQ-------LSPraDGPFVAVNCA--AIPEELLES 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 184 NLFGYVKGAFTGAQSDRPGAFEAADGGMLFLDEVHRLSAEGQEKLFTWLDRGEIYRVGDTaQGHPVSVRLVFATTEEIHS 263
Cdd:pfam00158 69 ELFGHEKGAFTGADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGT-KPIKVDVRIIAATNRDLEE 147
|
170 180
....*....|....*....|..
gi 340763789 264 TFLTTFLRRipiqvnlpDLQHR 285
Cdd:pfam00158 148 AVAEGRFRE--------DLYYR 161
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
132-339 |
2.94e-34 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 134.03 E-value: 2.94e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 132 PLLMTGESGTGKSYLAQLMHeyaiaqaLLSP--DAPFISFNCAqyASNPELLAANLFGYVKGAFTGAQSDRPGAFEAADG 209
Cdd:PRK11608 31 PVLIIGERGTGKELIASRLH-------YLSSrwQGPFISLNCA--ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADG 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 210 GMLFLDEVHRLSAEGQEKLFTWLDRGEIYRVGDTaQGHPVSVRLVFATTEEI-----HSTFLTTFLRRIPIQV-NLPDLq 283
Cdd:PRK11608 102 GTLFLDELATAPMLVQEKLLRVIEYGELERVGGS-QPLQVNVRLVCATNADLpamvaEGKFRADLLDRLAFDVvQLPPL- 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 340763789 284 hrsRQEKEALILL---FFWTEAKKLSATLI--LKPRLLQILNQYVYRGNVGELKNVVKYAV 339
Cdd:PRK11608 180 ---RERQSDIMLMaehFAIQMCRELGLPLFpgFTERARETLLNYRWPGNIRELKNVVERSV 237
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
134-342 |
1.30e-27 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 117.16 E-value: 1.30e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 134 LMTGESGTGKSYLAQLMHEyaiaqalLSP--DAPFISFNCAQYASNpeLLAANLFGYVKGAFTGAQSDRPGAFEAADGGM 211
Cdd:TIGR02915 166 LLLGESGTGKEVLARALHQ-------LSDrkDKRFVAINCAAIPEN--LLESELFGYEKGAFTGAVKQTLGKIEYAHGGT 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 212 LFLDEVHRLSAEGQEKLFTWLDRGEIYRVGDTAQgHPVSVRLVFATTEEIHS-----TFLTTFLRRI-PIQVNLPDLqhR 285
Cdd:TIGR02915 237 LFLDEIGDLPLNLQAKLLRFLQERVIERLGGREE-IPVDVRIVCATNQDLKRmiaegTFREDLFYRIaEISITIPPL--R 313
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 340763789 286 SRQEKEALILLFFW----TEAKKlsATLILKPRLLQILNQYVYRGNVGELKNVVKYAVATA 342
Cdd:TIGR02915 314 SRDGDAVLLANAFLerfaRELKR--KTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372
|
|
| PTS_IIA_man |
cd00006 |
PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: ... |
562-680 |
5.36e-22 |
|
PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Pssm-ID: 237978 [Multi-domain] Cd Length: 122 Bit Score: 92.28 E-value: 5.36e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 562 HAVILAHGyATASSIANVANRLL-KNTIFESFDMPLDVTPEAIAQQVMRYLEGHPLASGLMILVDM--GSLKAIHRHFDR 638
Cdd:cd00006 2 GIIIATHG-GFASGLLNSAEMILgEQENVEAIDFPPGESPDDLLEKIKAALAELDSGEGVLILTDLfgGSPNNAAARLSM 80
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 340763789 639 ALsTPVTIINNVSTSMALYVGERILQGHFIEEIARDIARDVP 680
Cdd:cd00006 81 EH-PPVEVIAGVNLPMLLEAARARELGLSLDELVENALEAGR 121
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
130-263 |
2.02e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 54.30 E-value: 2.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 130 GLPLLMTGESGTGKSYLAQlmheyAIAQALLSPDAPFISFNC-AQYASNPELLAANLFGYVKGAFTGAQSDRpGAFEAA- 207
Cdd:smart00382 2 GEVILIVGPPGSGKTTLAR-----ALARELGPPGGGVIYIDGeDILEEVLDQLLLIIVGGKKASGSGELRLR-LALALAr 75
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 340763789 208 --DGGMLFLDEVHRLSAEGQEKLFTWLDRGEIyrvgDTAQGHPVSVRLVFATTEEIHS 263
Cdd:smart00382 76 klKPDVLILDEITSLLDAEQEALLLLLEELRL----LLLLKSEKNLTVILTTNDEKDL 129
|
|
| PRD |
pfam00874 |
PRD domain; The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory ... |
826-904 |
1.36e-07 |
|
PRD domain; The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory domain found in bacterial transcriptional antiterminator such as BglG, SacY and LicT, as well as in activators such as MtlR and LevR. The PRD is phosphorylated on one or two conserved histidine residues. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria and are often characterized by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators pfam03123) or DNA (for activators), and a duplicated PRD module which is phosphorylated by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations modify the conformation and stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain. The structure of the LicT PRD domains has been solved in both the active (pdb:1h99) and inactive state (pdb:1tlv), revealing massive structural rearrangements upon activation.
Pssm-ID: 459973 [Multi-domain] Cd Length: 90 Bit Score: 49.94 E-value: 1.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 826 EQFLLRYEHLAGVTVSNER-KVALYVHISCLIERLIRHAGITAYSGQQCPEQ---ELNRLREAFSVIESNYSVKIPTAEL 901
Cdd:pfam00874 1 EEIIELIEKKLGITFDDDIlYIRLILHLAFAIERIKEGITIENPLLEEIKEKypkEFEIAKKILEILEEELGIELPEDEI 80
|
...
gi 340763789 902 GYI 904
Cdd:pfam00874 81 GYI 83
|
|
| BglG |
COG3711 |
Transcriptional antiterminator [Transcription]; |
795-904 |
1.97e-03 |
|
Transcriptional antiterminator [Transcription];
Pssm-ID: 442925 [Multi-domain] Cd Length: 618 Bit Score: 41.77 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 795 EINNLLLKNFSLRRVIESVTILDTSKVINHVEQFLlryehlaGVTVSNERKVALYVHISCLIERLIRHAGITAysgqqcP 874
Cdd:COG3711 159 LLSENDLLSLLLLKLIPEEDLELIEEIIEEAEKKL-------GIKLSDSIYINLTDHIAIAIKRIKKGKYIKL------D 225
|
90 100 110
....*....|....*....|....*....|....*....
gi 340763789 875 EQELNRLR---------EAFSVIESNYSVKIPTAELGYI 904
Cdd:COG3711 226 NPLLWEIKkpkeyeiakEILKLIEERLGISLPEDEIGYI 264
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
1-829 |
0e+00 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 783.53 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 1 MRKDVLLAFLMNQTDFFDPENVSEVFTARYLAQRFNMQRNTASHYLNQLVAQGVLCKINTRPVYFLHKQAFSQQFFTLSR 80
Cdd:COG1221 2 KRKEKILNYLKELTKNLSLEKKSEGFTAEEIAEKLGISRNNVSHELNELVKEGKLIKINGRPVLFLDKEAFEEQFGTKLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 81 NEYaSVAELLAHGEQECAPDDHFSLLIGHNESLKRPIEQLKTALFYPDGGLPLLMTGESGTGKSYLAQLMHEYAIAQALL 160
Cdd:COG1221 82 SEY-SFVELLAEKENNEEEEDPFDNLIGANGSLKNAIEQAKAAILYPPKGLHTLILGPTGVGKSFFAELMYEYAIEIGVL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 161 SPDAPFISFNCAQYASNPELLAANLFGYVKGAFTGAQSDRPGAFEAADGGMLFLDEVHRLSAEGQEKLFTWLDRGEIYRV 240
Cdd:COG1221 161 PEDAPFVVFNCADYANNPQLLMSQLFGYVKGAFTGADKDKEGLIEKADGGILFLDEVHRLPPEGQEMLFTFMDKGIYRRL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 241 GDTAQGHPVSVRLVFATTEEIHSTFLTTFLRRIPIQVNLPDLQHRSRQEKEALILLFFWTEAKKLSATLILKPRLLQILN 320
Cdd:COG1221 241 GETEKTRKANVRIIFATTEDPESSLLKTFLRRIPMVIKLPSLEERSLEERLELIKHFFKEEAKRLNKPIKVSKEVLKALL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 321 QYVYRGNVGELKNVVKYAVATAWAKKP--GQETVTVSLHDLPDAMLSALPSLNE--------SLADDTPVSITPDTNltW 390
Cdd:COG1221 321 LYDCPGNIGQLKSDIQLACAKAFLNYItnKKEEIEITLSDLPENVKKGLLKLKEnreeldklSEYLEEYLIISPDTE--K 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 391 LLRARDEMQGMIHDTQCHVLALYELVRSGKEGWETVQKRMGDEIEALFDRLIFTGDDNVHSQrlLLITSQVREEFYRLEK 470
Cdd:COG1221 399 KLISEEDEYELPYNFYEIIEDKYEELKSEGLSEEEINKIISKDIESYFKKLIFKLDKSNISE--ELLLIVVDEVIVNVVE 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 471 RFNMQLNGNCIYALSHYLIHRTALAPSRLNSEQIRQLDAFLAQKYPLLYSFCLQILETLGQKLDLEPRRID--------M 542
Cdd:COG1221 477 IFEEAEKKLLRYNSSNLFIALSLHLLSTLLRIKKGKKIINPQLNEIKKKYYEEFILAAEAIKIIEEELKILipdeeegfI 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 543 LLLALWLHKQGANNQKQVTHAVILAHGYATASSIANVANRLLKNTIFESFDMPLDVTPEAIAQQVMRYLEGHPLASGLMI 622
Cdd:COG1221 557 LLLLIELKEEKSLSENVIVVVVIAHGGAAASSSMAVVNLLLLEVAVAAIDDPPLEVVDVLIEEKTIVVIINKGKGGLLLL 636
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 623 LVDMGSLKAIHrhfdralsTPVTIINNVSTSMALYVGERILQGHFIEEIARDIARDVPVEYQLYWPKSNKPRAILTTCAT 702
Cdd:COG1221 637 LDDGGSLFGII--------IIEEEGIIIVTVVIVSTTTVLEAAARKKLLELDLDEIIVLEELLKNPLESKKIKISTSKKK 708
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 703 GIGVATNLCALLSASIPQALEIDVVACDYAMLASNKTQEPVFMRYDVLAIVGTLDPHIASVPWISLDSLISGEGNHYLMR 782
Cdd:COG1221 709 KIIVTTIAITTGEAGGILILILIIELLDKDLILIIIEILLIIIKEEILEKIIEEKKEVIIIVIISIIPLIIPPIILLLAL 788
|
810 820 830 840
....*....|....*....|....*....|....*....|....*..
gi 340763789 783 LFGSLTTPEQVAEINNLLLKNFSLRRVIESVTILDTSKVINHVEQFL 829
Cdd:COG1221 789 KLIILIEILVLLEILIDKEKIENIIKELLSLLNIIIVLLIIDILILI 835
|
|
| LevR |
COG3933 |
Transcriptional regulatory protein LevR, contains PRD, AAA+ and EIIA domains [Transcription]; |
8-908 |
0e+00 |
|
Transcriptional regulatory protein LevR, contains PRD, AAA+ and EIIA domains [Transcription];
Pssm-ID: 443134 [Multi-domain] Cd Length: 916 Bit Score: 718.82 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 8 AFLMNQTDFFDPENVSEVFTARYLAQRFNMQRNTASHYLNQLVAQGVLCKINTRPVYFLHKQAFSQQFFTLSRNEYASVA 87
Cdd:COG3933 1 KELSKKTESKVTNLNEAIAKARDLKELIKSKLLKESTGLLKLLALLLLLKRLSELLLELKKLKKEKKTLKKERSLLEKKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 88 ELLAHGEQECAPDDHFSLLIGHNESLKRPIEQLKTALFYPDGGLPLLMTGESGTGKSYLAQLMHEYAIAQALLSPDAPFI 167
Cdd:COG3933 81 NKLNLKEEKKEKLDFKALIGLSLSLLSAAAAAKAAKPPPPLGLLTLLLGGTGGGKSAFAGYMYAFAAKIAELAAPFVFFN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 168 SFNCAQYASNPELLAANLFGYVKGAFTGAQSDRPGAFEAADGGMLFLDEVHRLSAEGQEKLFTWLDRGEIYRVGDTAQGH 247
Cdd:COG3933 161 FANAAYNPNLLLLLLFGLGGGAGGGAGADGGGLGGAAGAGGGLLDLLDELPLEGEEQEELFFLLGKGLFRGEGGESRSRR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 248 PVSVRLVFATTEEIHSTFLTTFLRRIPIQVNLPDLQHRSRQEKEALILLFFWTEAKKLSATLILKPRLLQILNQYVYRGN 327
Cdd:COG3933 241 VRIIRATTETEESLLLTTLTRRIRIIIILPRLPILERRERERLLLLLFEFEEEEIRIIKILIVLLLALLLLLLYVNNLGQ 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 328 VGELKNVVKYAVATAWAKKPGQETVTVSLHDLPDAMLSALPSLNESLADDTPVSITPDTNLTWLLRARDEMQGMIHDTQC 407
Cdd:COG3933 321 LGLLKLLIKAAAAAALAKAIKEATIILRLLSKLLKLLLLLLLNERLLLLELKILIEPLDIFFDSSASSDESDESEEDENL 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 408 HVLALYELVRSGKEGWETVQKRMGDEIEALFDRLIFTGDDNV-------HSQRLLLITSQVREEFYRLEKRFNMQLNGNC 480
Cdd:COG3933 401 YEIIEIKKKLLLELGIDEEEINIIIEIDIDVHLLKFIYDDNKnfnkeelAKIVDEDIINVVEEILELAEKKLGRKFSENF 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 481 IYALSHYLIHRtaLAPSRLNSEQIRQLDAFLAQKYPLLYSFCLQILETLGQKLDLEPRRIDMLLLALWLHKQGANNQKQV 560
Cdd:COG3933 481 IYALSLHLSSF--IERIKEGKEIINPNLNEIKKKYPKEFKVAKEIKELIEQELDIEIPEDEVGFLTLFLVSLNENNESGK 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 561 THAVILAHGYATASSIANVANRLLKNTIFESFDMPLDVTPEAIAQQVMRYLEGHPLASGLMILVDMGSLKAIHRHFDRAL 640
Cdd:COG3933 559 VGVIVLAHGYSTASSMAEVANRLLGTNIFEAIDMPLDMSPEDILEKLKEYVKKIDTGKGVLLLVDMGSLTTFGEIIEEET 638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 641 STPVTIINNVSTSMALYVGERILQGHFIEEIARDIARDVPVE--YQLYWPKSNKPRAILTTCATGIGVATNLCALLSASI 718
Cdd:COG3933 639 GIPVKTIDMVSTPLVLEAGRKALLGMSLEEIYESLKNFNPYEkiISKNKPEKNKKKAIITTCFTGEGTAVKIKDLLEKSL 718
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 719 PQ-ALEIDVVACDYAMLASNKTQ-EPVFMRYDVLAIVGTLDPHIASVPWISLDSLISGEGNHYLMRLFGSLTTPEQVAEI 796
Cdd:COG3933 719 PEdEDNIEIIPLDYLELEEFKEKiDEIFKEYEILAIVGTIDPEIPDIPFISLEDLISGEGIEKLQKLLGGELDAEEIEEI 798
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 797 NNLLLKNFSLRRVIESVTILDTSKVINHVEQFLLRYEHLAGVTVSNERKVALYVHISCLIERLIRHAGITAYSG----QQ 872
Cdd:COG3933 799 NNEIIKNFSLESLIESLTILNPEKIINELEDFISRLENLLGIKLDNDVKIGLILHIACMIERLVTGEEILTYPNkeefIQ 878
|
890 900 910
....*....|....*....|....*....|....*.
gi 340763789 873 CPEQELNRLREAFSVIESNYSVKIPTAELGYIHNIL 908
Cdd:COG3933 879 ENESEYAVIKEAFSPIEEKYNIKIPDSEIAYIYDIL 914
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
106-285 |
5.74e-63 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 209.95 E-value: 5.74e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 106 LIGHNESLKRPIEQLKTALFYPdggLPLLMTGESGTGKSYLAQLMHEyaiaqalLSP--DAPFISFNCAqyASNPELLAA 183
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTD---APVLITGESGTGKELFARAIHQ-------LSPraDGPFVAVNCA--AIPEELLES 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 184 NLFGYVKGAFTGAQSDRPGAFEAADGGMLFLDEVHRLSAEGQEKLFTWLDRGEIYRVGDTaQGHPVSVRLVFATTEEIHS 263
Cdd:pfam00158 69 ELFGHEKGAFTGADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGT-KPIKVDVRIIAATNRDLEE 147
|
170 180
....*....|....*....|..
gi 340763789 264 TFLTTFLRRipiqvnlpDLQHR 285
Cdd:pfam00158 148 AVAEGRFRE--------DLYYR 161
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
101-369 |
2.47e-44 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 170.47 E-value: 2.47e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 101 DHFSLLIGHNESLKRPIEQLKTALfypDGGLPLLMTGESGTGKSYLAQlmheyAIAQALLSPDAPFISFNCAqyASNPEL 180
Cdd:COG3284 318 AALAALAGGDPAMRRALRRARRLA---DRDIPVLILGETGTGKELFAR-----AIHAASPRADGPFVAVNCA--AIPEEL 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 181 LAANLFGYVKGAFTGAQSD-RPGAFEAADGGMLFLDEVHRLSAEGQEKLFTWLDRGEIYRVGDTaQGHPVSVRLVFATT- 258
Cdd:COG3284 388 IESELFGYEPGAFTGARRKgRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGT-KPIPVDVRLIAATHr 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 259 ---EEIHS-TFLTTFLRRI-PIQVNLPDLqhRSRQEKEALILLFFWTEAKKlSATLILKPRLLQILNQYVYRGNVGELKN 333
Cdd:COG3284 467 dlrELVAAgRFREDLYYRLnGLTLTLPPL--REREDLPALIEHLLRELAAG-RGPLRLSPEALALLAAYPWPGNVRELRN 543
|
250 260 270
....*....|....*....|....*....|....*.
gi 340763789 334 VVKYAVATAwakkpgqETVTVSLHDLPDAMLSALPS 369
Cdd:COG3284 544 VLRTALALA-------DGGVITVEDLPDELRAELAA 572
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
84-363 |
4.86e-44 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 165.14 E-value: 4.86e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 84 ASVAELLAHGEQECAPDDHfSLLIGHNESLKRPIEQLKTALfypDGGLPLLMTGESGTGKSYLAQLMHEyaiaqalLSP- 162
Cdd:COG2204 112 AAVERALERRRLRRENAED-SGLIGRSPAMQEVRRLIEKVA---PSDATVLITGESGTGKELVARAIHR-------LSPr 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 163 -DAPFISFNCAqyASNPELLAANLFGYVKGAFTGAQSDRPGAFEAADGGMLFLDEVHRLSAEGQEKLFTWLDRGEIYRVG 241
Cdd:COG2204 181 aDGPFVAVNCA--AIPEELLESELFGHEKGAFTGAVARRIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVG 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 242 DTaQGHPVSVRLVFATT----EEIHS-TFLTTFLRRI-PIQVNLPDLqhRSRQEKEALILLFFWTE-AKKLSATLILKPR 314
Cdd:COG2204 259 GN-KPIPVDVRVIAATNrdleELVEEgRFREDLYYRLnVFPIELPPL--RERREDIPLLARHFLARfAAELGKPVKLSPE 335
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 340763789 315 LLQILNQYVYRGNVGELKNVVKYAVATAwakkpgqETVTVSLHDLPDAM 363
Cdd:COG2204 336 ALEALLAYDWPGNVRELENVIERAVILA-------DGEVITAEDLPEAL 377
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
102-376 |
2.21e-41 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 158.01 E-value: 2.21e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 102 HFSLLIGHNESLKRPIEQLKTALFYPdggLPLLMTGESGTGKSYLAQLMHEyaiaqalLSP--DAPFISFNCAqyASNPE 179
Cdd:COG3829 136 TFDDIIGKSPAMKELLELAKRVAKSD---STVLILGESGTGKELFARAIHN-------ASPrrDGPFVAVNCA--AIPEN 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 180 LLAANLFGYVKGAFTGA-QSDRPGAFEAADGGMLFLDEVHRLSAEGQEKLFTWLDRGEIYRVGDTaQGHPVSVRLVFAT- 257
Cdd:COG3829 204 LLESELFGYEKGAFTGAkKGGKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGT-KPIPVDVRIIAATn 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 258 ---TEEIHStflTTF-------LRRIPIqvNLPDLQHRsrqeKEALILL--FFwteAKKLSATL-----ILKPRLLQILN 320
Cdd:COG3829 283 rdlEEMVEE---GRFredlyyrLNVIPI--HIPPLRER----KEDIPLLaeHF---LEKFNKKYgknikGISPEALELLL 350
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 340763789 321 QYVYRGNVGELKNVVKYAVATAwakkpgqETVTVSLHDLPDAMLSALP--------SLNESLAD 376
Cdd:COG3829 351 AYDWPGNVRELENVIERAVVLS-------EGDVITPEHLPEYLLEEAEaasaaeegSLKEALEE 407
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
132-339 |
2.94e-34 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 134.03 E-value: 2.94e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 132 PLLMTGESGTGKSYLAQLMHeyaiaqaLLSP--DAPFISFNCAqyASNPELLAANLFGYVKGAFTGAQSDRPGAFEAADG 209
Cdd:PRK11608 31 PVLIIGERGTGKELIASRLH-------YLSSrwQGPFISLNCA--ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADG 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 210 GMLFLDEVHRLSAEGQEKLFTWLDRGEIYRVGDTaQGHPVSVRLVFATTEEI-----HSTFLTTFLRRIPIQV-NLPDLq 283
Cdd:PRK11608 102 GTLFLDELATAPMLVQEKLLRVIEYGELERVGGS-QPLQVNVRLVCATNADLpamvaEGKFRADLLDRLAFDVvQLPPL- 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 340763789 284 hrsRQEKEALILL---FFWTEAKKLSATLI--LKPRLLQILNQYVYRGNVGELKNVVKYAV 339
Cdd:PRK11608 180 ---RERQSDIMLMaehFAIQMCRELGLPLFpgFTERARETLLNYRWPGNIRELKNVVERSV 237
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
131-383 |
8.40e-34 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 136.84 E-value: 8.40e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 131 LPLLMTGESGTGKSYLAQLMHEyaiaqalLSP--DAPFISFNCAqyaSNPELLA-ANLFGYVKGAFTGAQSDRPGAFEAA 207
Cdd:PRK05022 211 LNVLILGETGVGKELVARAIHA-------ASPraDKPLVYLNCA---ALPESLAeSELFGHVKGAFTGAISNRSGKFELA 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 208 DGGMLFLDEVHRLSAEGQEKLFTWLDRGEIYRVGDTaQGHPVSVRLVFAT----TEEIHS-TFLTTFLRRI---PIQVnl 279
Cdd:PRK05022 281 DGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSD-RSLRVDVRVIAATnrdlREEVRAgRFRADLYHRLsvfPLSV-- 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 280 PDLQHRSRQekealILL---FFWTEAK-KLSAT-LILKPRLLQILNQYVYRGNVGELKNVVKYAVATAWAKKPGQEtVTV 354
Cdd:PRK05022 358 PPLRERGDD-----VLLlagYFLEQNRaRLGLRsLRLSPAAQAALLAYDWPGNVRELEHVISRAALLARARGAGRI-VTL 431
|
250 260
....*....|....*....|....*....
gi 340763789 355 SLHDLPDAMLSALPSLNESLADDTPVSIT 383
Cdd:PRK05022 432 EAQHLDLPAEVALPPPEAAAAPAAVVSQN 460
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
133-386 |
8.43e-29 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 121.13 E-value: 8.43e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 133 LLMTGESGTGKSYLAQLMHEYaiaqallSP--DAPFISFNCAqyASNPELLAANLFGYVKGAFTGAQSDRPGAFEAADGG 210
Cdd:PRK10923 164 VLINGESGTGKELVAHALHRH-------SPraKAPFIALNMA--AIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 211 MLFLDEVHRLSAEGQEKLFTWLDRGEIYRVGDTAQGHpVSVRLVFATTEEIH-----STFLTTFLRRIP-IQVNLPDLQH 284
Cdd:PRK10923 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVK-VDVRIIAATHQNLEqrvqeGKFREDLFHRLNvIRVHLPPLRE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 285 RsRQEKEALILLFFWTEAKKLSA-TLILKPRLLQILNQYVYRGNVGELKNVVKYAVATAwakkPGQEtvtVSLHDLPdam 363
Cdd:PRK10923 314 R-REDIPRLARHFLQVAARELGVeAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA----AGQE---VLIQDLP--- 382
|
250 260
....*....|....*....|...
gi 340763789 364 lsalPSLNESLADDTPVSITPDT 386
Cdd:PRK10923 383 ----GELFESTVPESTSQMQPDS 401
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
134-395 |
3.44e-28 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 120.21 E-value: 3.44e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 134 LMTGESGTGKSYLAQLMH-EYAIAQALLS--PDAPFISFNCAQYASNpeLLAANLFGYVKGAFTGAQ-SDRPGAFEAADG 209
Cdd:PRK15424 246 LIQGETGTGKELAAQAIHrEYFARHDARQgkKSHPFVAVNCGAIAES--LLEAELFGYEEGAFTGSRrGGRAGLFEIAHG 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 210 GMLFLDEVHRLSAEGQEKLFTWLDRGEIYRVGDTaQGHPVSVRLVFATTEEIHS-----TFLTTFLRRIPI-QVNLPDLq 283
Cdd:PRK15424 324 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGH-QPVPVDVRVISATHCDLEEdvrqgRFRRDLFYRLSIlRLQLPPL- 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 284 hRSRQEKEALILLFFWTEAkkLSAT-LILKPRLLQILNQ-------YVYRGNVGELKNVVKyAVATAWAKKPgqetvtvs 355
Cdd:PRK15424 402 -RERVADILPLAESFLKQS--LAALsAPFSAALRQGLQQcetlllhYDWPGNVRELRNLME-RLALFLSVEP-------- 469
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 340763789 356 LHDL-PDAMLSALPSLNESLADDTPVSITPDTNLTWLLRAR 395
Cdd:PRK15424 470 TPDLtPQFLQLLLPELARESAKTPAPRLLAATLQQALERFN 510
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
134-342 |
1.30e-27 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 117.16 E-value: 1.30e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 134 LMTGESGTGKSYLAQLMHEyaiaqalLSP--DAPFISFNCAQYASNpeLLAANLFGYVKGAFTGAQSDRPGAFEAADGGM 211
Cdd:TIGR02915 166 LLLGESGTGKEVLARALHQ-------LSDrkDKRFVAINCAAIPEN--LLESELFGYEKGAFTGAVKQTLGKIEYAHGGT 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 212 LFLDEVHRLSAEGQEKLFTWLDRGEIYRVGDTAQgHPVSVRLVFATTEEIHS-----TFLTTFLRRI-PIQVNLPDLqhR 285
Cdd:TIGR02915 237 LFLDEIGDLPLNLQAKLLRFLQERVIERLGGREE-IPVDVRIVCATNQDLKRmiaegTFREDLFYRIaEISITIPPL--R 313
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 340763789 286 SRQEKEALILLFFW----TEAKKlsATLILKPRLLQILNQYVYRGNVGELKNVVKYAVATA 342
Cdd:TIGR02915 314 SRDGDAVLLANAFLerfaRELKR--KTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
84-339 |
1.84e-26 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 113.59 E-value: 1.84e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 84 ASVAELLAH-----GEQECAPDDHFSLlIGHNESLKRPIEQLktALFYPDGGlPLLMTGESGTGKSYLAQLMHEYAIAQa 158
Cdd:PRK10365 115 ATLEKALAHthsidAETPAVTASQFGM-VGKSPAMQHLLSEI--ALVAPSEA-TVLIHGDSGTGKELVARAIHASSARS- 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 159 llspDAPFISFNCAqyASNPELLAANLFGYVKGAFTGAQSDRPGAFEAADGGMLFLDEVHRLSAEGQEKLFTWLDRGEIY 238
Cdd:PRK10365 190 ----EKPLVTLNCA--ALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQ 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 239 RVGdTAQGHPVSVRLVFAT----TEEIHS-TFLTTFLRRIP-IQVNLPDLqhRSRQEKEALILLFFWTE--AKKLSATLI 310
Cdd:PRK10365 264 RVG-SNQTISVDVRLIAAThrdlAAEVNAgRFRQDLYYRLNvVAIEVPSL--RQRREDIPLLAGHFLQRfaERNRKAVKG 340
|
250 260
....*....|....*....|....*....
gi 340763789 311 LKPRLLQILNQYVYRGNVGELKNVVKYAV 339
Cdd:PRK10365 341 FTPQAMDLLIHYDWPGNIRELENAVERAV 369
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
116-373 |
2.00e-26 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 114.57 E-value: 2.00e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 116 PIEQLK-TALFYPDGGLPLLMTGESGTGKSYLAQLMHeyaiaQALLSPDAPFISFNCAQYASNpeLLAANLFGYVKGAFT 194
Cdd:TIGR02329 220 PMEQVRaLVRLYARSDATVLILGESGTGKELVAQAIH-----QLSGRRDFPFVAINCGAIAES--LLEAELFGYEEGAFT 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 195 GA-QSDRPGAFEAADGGMLFLDEVHRLSAEGQEKLFTWLDRGEIYRVGDTaQGHPVSVRLVFATTEEIHS-----TFLTT 268
Cdd:TIGR02329 293 GArRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGT-EPVPVDVRVVAATHCALTTavqqgRFRRD 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 269 FLRRIPI-QVNLPDLQHRSrqeKEALILLFFWTEAKKLSATLILKPRLLQ-------ILNQYVYRGNVGELKNVVKyAVA 340
Cdd:TIGR02329 372 LFYRLSIlRIALPPLRERP---GDILPLAAEYLVQAAAALRLPDSEAAAQvlagvadPLQRYPWPGNVRELRNLVE-RLA 447
|
250 260 270
....*....|....*....|....*....|...
gi 340763789 341 TAWAKKPgQETVTvslhdlPDAMLSALPSLNES 373
Cdd:TIGR02329 448 LELSAMP-AGALT------PDVLRALAPELAEA 473
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
133-339 |
8.21e-26 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 111.86 E-value: 8.21e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 133 LLMTGESGTGKSYLAQLMHeYAIAQAllspDAPFISFNCAQYasnPE-LLAANLFGYVKGAFTGAQSDRPGAFEAADGGM 211
Cdd:PRK11361 169 VLISGESGTGKELIARAIH-YNSRRA----KGPFIKVNCAAL---PEsLLESELFGHEKGAFTGAQTLRQGLFERANEGT 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 212 LFLDEVHRLSAEGQEKLFTWLDRGEIYRVGdtaqGH---PVSVRLVFATTEEIHS-----TFLTT-FLRRIPIQVNLPDL 282
Cdd:PRK11361 241 LLLDEIGEMPLVLQAKLLRILQEREFERIG----GHqtiKVDIRIIAATNRDLQAmvkegTFREDlFYRLNVIHLILPPL 316
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 340763789 283 qhRSRQEKEALILLFFwteAKKLSA-----TLILKPRLLQILNQYVYRGNVGELKNVVKYAV 339
Cdd:PRK11361 317 --RDRREDISLLANHF---LQKFSSenqrdIIDIDPMAMSLLTAWSWPGNIRELSNVIERAV 373
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
100-340 |
2.03e-25 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 111.43 E-value: 2.03e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 100 DDHFSLLIGHNESLKRPIEQLK--TALfypDGglPLLMTGESGTGKSYLAQLMHeyaiaqaLLSP--DAPFISFNCAqya 175
Cdd:COG3283 200 DSGFDHIVASSPKMRQVIRQAKkmAML---DA--PLLIQGETGTGKELLARACH-------LASPrgDKPFLALNCA--- 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 176 SNPELLA-ANLFGYVKGAFTGAQSDRPGAFEAADGGMLFLDEVHRLSAEGQEKLFTWLDRGEIYRVGDTAQGHpVSVRLV 254
Cdd:COG3283 265 ALPDDVAeSELFGYAPGAFGNAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVK-VDVRVI 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 255 FATteeihstflttflrripiQVNLP----------DLQHR----------SRQEKEALILL--FFWTE-AKKLSATLI- 310
Cdd:COG3283 344 CAT------------------QKDLAelvqegefreDLYYRlnvltltlppLRERKSDILPLaeHFVARfSQQLGRPRPr 405
|
250 260 270
....*....|....*....|....*....|
gi 340763789 311 LKPRLLQILNQYVYRGNVGELKNVVKYAVA 340
Cdd:COG3283 406 LSPDLVDFLQSYPWPGNVRQLENALYRAVS 435
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
103-403 |
1.30e-22 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 103.60 E-value: 1.30e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 103 FSLLIGHNESLKRPIEQLKTALfypDGGLPLLMTGESGTGKSYLAQLMH---EYAiaqallspDAPFISFNCAQYasNPE 179
Cdd:PRK11388 324 FDHMPQDSPQMRRLIHFGRQAA---KSSFPVLLCGEEGVGKALLAQAIHnesERA--------AGPYIAVNCQLY--PDE 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 180 LLAANLFGyvkGAFTGAQSDRPGAFEAADGGMLFLDEVHRLSAEGQEKLFTWLDRGEIYRVgDTAQGHPVSVRLVFATTE 259
Cdd:PRK11388 391 ALAEEFLG---SDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRL-DSRRLIPVDVRVIATTTA 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 260 EIHSTFLTTFLRR---IPIQVN---LPDLQHRsRQEKEALILLFFWTEAKKLSATLILKPRLLQILNQYVYRGNVGELKN 333
Cdd:PRK11388 467 DLAMLVEQNRFSRqlyYALHAFeitIPPLRMR-REDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRS 545
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 334 VVKYAVATAwakkpgqETVTVSLHDLPDAMLSALPSLNeslADDTPVSitpdTNLTWllrARDEMQGMIH 403
Cdd:PRK11388 546 VIENLALSS-------DNGRIRLSDLPEHLFTEQATDD---VSATRLS----TSLSL---AELEKEAIIN 598
|
|
| PTS_IIA_man |
cd00006 |
PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: ... |
562-680 |
5.36e-22 |
|
PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Pssm-ID: 237978 [Multi-domain] Cd Length: 122 Bit Score: 92.28 E-value: 5.36e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 562 HAVILAHGyATASSIANVANRLL-KNTIFESFDMPLDVTPEAIAQQVMRYLEGHPLASGLMILVDM--GSLKAIHRHFDR 638
Cdd:cd00006 2 GIIIATHG-GFASGLLNSAEMILgEQENVEAIDFPPGESPDDLLEKIKAALAELDSGEGVLILTDLfgGSPNNAAARLSM 80
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 340763789 639 ALsTPVTIINNVSTSMALYVGERILQGHFIEEIARDIARDVP 680
Cdd:cd00006 81 EH-PPVEVIAGVNLPMLLEAARARELGLSLDELVENALEAGR 121
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
100-340 |
5.77e-22 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 100.92 E-value: 5.77e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 100 DDHFSLLIGHNESLKRPIEQL-KTALFypdgGLPLLMTGESGTGKSYLAQLMHeyaiaqaLLSPDA--PFISFNCAqyaS 176
Cdd:PRK10820 200 DSAFSQIVAVSPKMRQVVEQArKLAML----DAPLLITGDTGTGKDLLAYACH-------LRSPRGkkPFLALNCA---S 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 177 NPELLA-ANLFGYVKGAFTGAQSDRPGAFEAADGGMLFLDEVHRLSAEGQEKLFTWLDRGEIYRVGDTAQGHpVSVRLVF 255
Cdd:PRK10820 266 IPDDVVeSELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVH-VDVRVIC 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 256 ATTEEI-----HSTFLTTFLRRIPI-QVNLPDLQHRsRQEKEALILLF---FWTEAK----KLSatlilkPRLLQILNQY 322
Cdd:PRK10820 345 ATQKNLvelvqKGEFREDLYYRLNVlTLNLPPLRDR-PQDIMPLTELFvarFADEQGvprpKLA------ADLNTVLTRY 417
|
250
....*....|....*...
gi 340763789 323 VYRGNVGELKNVVKYAVA 340
Cdd:PRK10820 418 GWPGNVRQLKNAIYRALT 435
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
86-339 |
8.87e-21 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 97.98 E-value: 8.87e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 86 VAELLAHGEQECAPDDHFSLLIGHNESLKRPIEQLKTAlfyPDGGLPLLMTGESGTGKSYLAQLMHEyaiaqalLSP--D 163
Cdd:PRK15429 358 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMV---AQSDSTVLILGETGTGKELIARAIHN-------LSGrnN 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 164 APFISFNCAqyASNPELLAANLFGYVKGAFTGAQSDRPGAFEAADGGMLFLDEVHRLSAEGQEKLFTWLDRGEIYRVGDT 243
Cdd:PRK15429 428 RRMVKMNCA--AMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSN 505
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 244 AQGHpVSVRLVFATTEEIHST-----FLTTFLRRI---PIQvnLPDLqhRSRQEKEALILLFFWTE-AKKLSATLILKP- 313
Cdd:PRK15429 506 KIIQ-TDVRLIAATNRDLKKMvadreFRSDLYYRLnvfPIH--LPPL--RERPEDIPLLVKAFTFKiARRMGRNIDSIPa 580
|
250 260
....*....|....*....|....*.
gi 340763789 314 RLLQILNQYVYRGNVGELKNVVKYAV 339
Cdd:PRK15429 581 ETLRTLSNMEWPGNVRELENVIERAV 606
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
133-373 |
2.00e-20 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 95.29 E-value: 2.00e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 133 LLMTGESGTGKSYLAQlmheyAIAQALLSPDAPFISFNCAqyASNPELLAANLFGYVKGAFTGAQSDRPGAFEAADGGML 212
Cdd:PRK15115 160 VLINGQSGTGKEILAQ-----AIHNASPRASKPFIAINCG--ALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 213 FLDEVHRLSAEGQEKLFTWLDRGEIYRVGDTaQGHPVSVRLVFATTEEI-----HSTFLTTFLRRIPIqVNL--PDLQHR 285
Cdd:PRK15115 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSN-RDIDIDVRIISATHRDLpkamaRGEFREDLYYRLNV-VSLkiPALAER 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 286 S-----------RQ--EKEALILLFFWTEAKKLsatlilkprllqiLNQYVYRGNVGELKNVVKYAVATAWAKKPGQETV 352
Cdd:PRK15115 311 TedipllanhllRQaaERHKPFVRAFSTDAMKR-------------LMTASWPGNVRQLVNVIEQCVALTSSPVISDALV 377
|
250 260
....*....|....*....|.
gi 340763789 353 TVSLhdlpDAMLSALPSLNES 373
Cdd:PRK15115 378 EQAL----EGENTALPTFVEA 394
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
132-225 |
2.64e-19 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 92.59 E-value: 2.64e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 132 PLLMTGESGTGKSYLAQLMHEYAIAQALLSpdAPFISFNCA-----QYASNpellaanLFGYVKGAFTGAQSDRPGAFEA 206
Cdd:COG4650 210 PILLTGPTGAGKSQLARRIYELKKARHQVS--GRFVEVNCAtlrgdGAMSA-------LFGHVKGAFTGAVSDRAGLLRS 280
|
90
....*....|....*....
gi 340763789 207 ADGGMLFLDEVHRLSAEGQ 225
Cdd:COG4650 281 ADGGVLFLDEIGELGLDEQ 299
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
117-280 |
7.54e-17 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 78.34 E-value: 7.54e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 117 IEQLKTALFYPDGGlPLLMTGESGTGKSYLAQlmheyAIAQALLSPDAPFISFNCAQYASNPELLAANLFGYVKGAFtga 196
Cdd:cd00009 7 IEALREALELPPPK-NLLLYGPPGTGKTTLAR-----AIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLF--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 197 qsdrpGAFEAADGGMLFLDEVHRLSAEGQEKLFTWLDRGEIYRVGdtaqghPVSVRLVFATTEEIHSTFLTTFLRRIPIQ 276
Cdd:cd00009 78 -----ELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRID------RENVRVIGATNRPLLGDLDRALYDRLDIR 146
|
....
gi 340763789 277 VNLP 280
Cdd:cd00009 147 IVIP 150
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
113-260 |
3.45e-09 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 56.20 E-value: 3.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 113 LKRPIEQLKTALFypdgglPLLMTGESGTGKSYLAQLMHeyaiaqallSPDAPFIS-FNCAQYASNPELLaanlfgyvkg 191
Cdd:pfam14532 10 IKRRLEQAAQSTL------PVFLTGEPGSGKEFCARYLH---------NPSTPWVQpFDIEYLAHAPLEL---------- 64
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 340763789 192 aftgaqsdrpgaFEAADGGMLFLDEVHRLSAEGQEKLFTWLDRGEIYRvgdtaqghpvsVRLVFATTEE 260
Cdd:pfam14532 65 ------------LEQAKGGTLYLKDIADLSKALQKGLLLLLAKAEGYR-----------VRLVCTSSKD 110
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
136-342 |
1.19e-08 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 57.94 E-value: 1.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 136 TGESGTGKSYLAQLMHEyaiaqalLSP--DAPFISFNCAqyaSNPELLAANLfgyvkgaftgaqsdrpgafeaadggmlf 213
Cdd:COG3604 121 LGETGTGKELVANAIHE-------LSPraDKPFVKVNCA---ALPESLLESL---------------------------- 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 214 ldevhrlsaegQEklftwldrGEIYRVGDTaQGHPVSVRLVFAT----TEEIHS-TFLTTFLRRI---PIQVnlPDLqhR 285
Cdd:COG3604 163 -----------QE--------GEFERVGGD-ETIKVDVRIIAATnrdlEEEVAEgRFREDLYYRLnvfPIRL--PPL--R 218
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 340763789 286 SRQEKEALILLFFWTE-AKKL-SATLILKPRLLQILNQYVYRGNVGELKNVVKYAVATA 342
Cdd:COG3604 219 ERREDIPLLAEHFLEKfSRRLgKPILRLSPEALEALMAYPWPGNVRELENVIERAVILA 277
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
130-263 |
2.02e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 54.30 E-value: 2.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 130 GLPLLMTGESGTGKSYLAQlmheyAIAQALLSPDAPFISFNC-AQYASNPELLAANLFGYVKGAFTGAQSDRpGAFEAA- 207
Cdd:smart00382 2 GEVILIVGPPGSGKTTLAR-----ALARELGPPGGGVIYIDGeDILEEVLDQLLLIIVGGKKASGSGELRLR-LALALAr 75
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 340763789 208 --DGGMLFLDEVHRLSAEGQEKLFTWLDRGEIyrvgDTAQGHPVSVRLVFATTEEIHS 263
Cdd:smart00382 76 klKPDVLILDEITSLLDAEQEALLLLLEELRL----LLLLKSEKNLTVILTTNDEKDL 129
|
|
| PRD |
pfam00874 |
PRD domain; The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory ... |
826-904 |
1.36e-07 |
|
PRD domain; The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory domain found in bacterial transcriptional antiterminator such as BglG, SacY and LicT, as well as in activators such as MtlR and LevR. The PRD is phosphorylated on one or two conserved histidine residues. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria and are often characterized by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators pfam03123) or DNA (for activators), and a duplicated PRD module which is phosphorylated by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations modify the conformation and stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain. The structure of the LicT PRD domains has been solved in both the active (pdb:1h99) and inactive state (pdb:1tlv), revealing massive structural rearrangements upon activation.
Pssm-ID: 459973 [Multi-domain] Cd Length: 90 Bit Score: 49.94 E-value: 1.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 826 EQFLLRYEHLAGVTVSNER-KVALYVHISCLIERLIRHAGITAYSGQQCPEQ---ELNRLREAFSVIESNYSVKIPTAEL 901
Cdd:pfam00874 1 EEIIELIEKKLGITFDDDIlYIRLILHLAFAIERIKEGITIENPLLEEIKEKypkEFEIAKKILEILEEELGIELPEDEI 80
|
...
gi 340763789 902 GYI 904
Cdd:pfam00874 81 GYI 83
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
133-280 |
1.92e-06 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 47.97 E-value: 1.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 133 LLMTGESGTGKSYLAqlmheYAIAQALlspDAPFISFNCAQYASNPELLAANLfgyVKGAFTGAQSDRPgafeaadgGML 212
Cdd:pfam00004 1 LLLYGPPGTGKTTLA-----KAVAKEL---GAPFIEISGSELVSKYVGESEKR---LRELFEAAKKLAP--------CVI 61
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 340763789 213 FLDEVHRL-----------SAEGQEKLFTWLDrgeiyrvGDTAQGHPVsvrLVFATTEEIHStFLTTFLRRIPIQVNLP 280
Cdd:pfam00004 62 FIDEIDALagsrgsggdseSRRVVNQLLTELD-------GFTSSNSKV---IVIAATNRPDK-LDPALLGRFDRIIEFP 129
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
132-260 |
2.51e-06 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 47.67 E-value: 2.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 132 PLLMTGESGTGKSYLAQLMheyaiaQALLSPDAPFIsfncaqYASNPELLAANLFG-YVKGAFTGAQSDRPGAFEAADGG 210
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERL------AAALSNRPVFY------VQLTRDTTEEDLFGrRNIDPGGASWVDGPLVRAAREGE 68
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 340763789 211 MLFLDEVHRLSAEGQEKLFTWLDRGEIYRV-GDTAQGHPVSVRLVFATTEE 260
Cdd:pfam07728 69 IAVLDEINRANPDVLNSLLSLLDERRLLLPdGGELVKAAPDGFRLIATMNP 119
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
98-363 |
8.31e-06 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 49.14 E-value: 8.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 98 APDDHFSLLIGhNESLKRPIEQLKTALF-----YPDGGLP----LLMTGESGTGKSYLAqlmheYAIAQALlspDAPFIS 168
Cdd:COG0464 151 LREAILDDLGG-LEEVKEELRELVALPLkrpelREEYGLPpprgLLLYGPPGTGKTLLA-----RALAGEL---GLPLIE 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 169 FNCAqyasnpELL-------AANLfgyvKGAFTGAqsdrpgafEAADGGMLFLDEVHRLSAEGQEK-----------LFT 230
Cdd:COG0464 222 VDLS------DLVskyvgetEKNL----REVFDKA--------RGLAPCVLFIDEADALAGKRGEVgdgvgrrvvntLLT 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 231 WLDRGEiyrvgdtaqgHPVsvrLVFATT---EEIHStfltTFLRRIPIQVNLPDLqhrSRQEKEALILLFFwtEAKKLSA 307
Cdd:COG0464 284 EMEELR----------SDV---VVIAATnrpDLLDP----ALLRRFDEIIFFPLP---DAEERLEIFRIHL--RKRPLDE 341
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 340763789 308 TLILKpRLLQILNQYVYRgnvgELKNVVKYAVATAWAkkpgQETVTVSLHDLPDAM 363
Cdd:COG0464 342 DVDLE-ELAEATEGLSGA----DIRNVVRRAALQALR----LGREPVTTEDLLEAL 388
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
106-259 |
7.77e-05 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 46.23 E-value: 7.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 106 LIGHNESLKRPIE--QLKTALFYpdgglpllmtGESGTGKSYLAQLmheyaIAQALlspDAPFISFNcAQYASNPELLAA 183
Cdd:PRK13342 20 LLGPGKPLRRMIEagRLSSMILW----------GPPGTGKTTLARI-----IAGAT---DAPFEALS-AVTSGVKDLREV 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 340763789 184 nlfgyVKGAFTGAQSDRpgafeaadGGMLFLDEVHRLSAEGQEKLFTWLDRGEIYRVGdtaqghpvsvrlvfATTE 259
Cdd:PRK13342 81 -----IEEARQRRSAGR--------RTILFIDEIHRFNKAQQDALLPHVEDGTITLIG--------------ATTE 129
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
128-265 |
1.64e-04 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 42.33 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 128 DGGLPLLMTGESGTGKSYLAQLMHEyaiaqALLSPDAPFISFNCAQYASNPELLAANLFGYVKGAFTGAQSDRPGAF--- 204
Cdd:pfam13401 3 FGAGILVLTGESGTGKTTLLRRLLE-----QLPEVRDSVVFVDLPSGTSPKDLLRALLRALGLPLSGRLSKEELLAAlqq 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 340763789 205 ---EAADGGMLFLDEVHRLSAEGQEKLFTWLDRGEIyrvgdtaqghpvSVRLVFATTEEIHSTF 265
Cdd:pfam13401 78 lllALAVAVVLIIDEAQHLSLEALEELRDLLNLSSK------------LLQLILVGTPELRELL 129
|
|
| BglG |
COG3711 |
Transcriptional antiterminator [Transcription]; |
795-904 |
1.97e-03 |
|
Transcriptional antiterminator [Transcription];
Pssm-ID: 442925 [Multi-domain] Cd Length: 618 Bit Score: 41.77 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 795 EINNLLLKNFSLRRVIESVTILDTSKVINHVEQFLlryehlaGVTVSNERKVALYVHISCLIERLIRHAGITAysgqqcP 874
Cdd:COG3711 159 LLSENDLLSLLLLKLIPEEDLELIEEIIEEAEKKL-------GIKLSDSIYINLTDHIAIAIKRIKKGKYIKL------D 225
|
90 100 110
....*....|....*....|....*....|....*....
gi 340763789 875 EQELNRLR---------EAFSVIESNYSVKIPTAELGYI 904
Cdd:COG3711 226 NPLLWEIKkpkeyeiakEILKLIEERLGISLPEDEIGYI 264
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
111-221 |
5.34e-03 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 38.42 E-value: 5.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340763789 111 ESLKRPIEQLKTALFYPDGGLPL----LMTGESGTGKSYLAQlmheyAIAQALlspDAPFISFNCAQYASnpellaanlf 186
Cdd:cd19481 3 ASLREAVEAPRRGSRLRRYGLGLpkgiLLYGPPGTGKTLLAK-----ALAGEL---GLPLIVVKLSSLLS---------- 64
|
90 100 110
....*....|....*....|....*....|....*....
gi 340763789 187 gyvkgAFTGAQSDRPGA-FEAAD---GGMLFLDEVHRLS 221
Cdd:cd19481 65 -----KYVGESEKNLRKiFERARrlaPCILFIDEIDAIG 98
|
|
| |
