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Conserved domains on  [gi|345503712|gb|AEN98395|]
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hypothetical protein RHOM_16455 [Roseburia hominis A2-183]

Protein Classification

TnpV protein( domain architecture ID 10624640)

transposon-encoded TnpV family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TnpV pfam14198
Transposon-encoded protein TnpV; This family of proteins is functionally uncharacterized. This ...
 6-115 7.88e-31

Transposon-encoded protein TnpV; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 114 and 125 amino acids in length.


:

Pssm-ID: 433767  Cd Length: 112  Bit Score: 105.65  E-value: 7.88e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345503712    6 TYKEVDGLLYPELTMPDETEDlTKLGRYGRMAMKYLLENEPARYKTLMRFGKMYEKMSAVEEEANQLYDQLEEQYLMKH- 84
Cdd:pfam14198   1 TYTLQGDYLIPNLTLPEEEEE-RPIGKYGRMRLRYLKEHRPGLYTNLLLSGKLNEHLAEIDEQAEERLERLVKQMAEKEg 79

                          90       100       110
                  ....*....|....*....|....*....|...
gi 345503712   85 --KPQNPSSTMEMWKIREQAKMQAEEVVLHQIV 115
Cdd:pfam14198  80 vtEELKAEDQMEWVRRMNNIRNRAEEIVLNELI 112
 
Name Accession Description Interval E-value
TnpV pfam14198
Transposon-encoded protein TnpV; This family of proteins is functionally uncharacterized. This ...
 6-115 7.88e-31

Transposon-encoded protein TnpV; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 114 and 125 amino acids in length.


Pssm-ID: 433767  Cd Length: 112  Bit Score: 105.65  E-value: 7.88e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345503712    6 TYKEVDGLLYPELTMPDETEDlTKLGRYGRMAMKYLLENEPARYKTLMRFGKMYEKMSAVEEEANQLYDQLEEQYLMKH- 84
Cdd:pfam14198   1 TYTLQGDYLIPNLTLPEEEEE-RPIGKYGRMRLRYLKEHRPGLYTNLLLSGKLNEHLAEIDEQAEERLERLVKQMAEKEg 79

                          90       100       110
                  ....*....|....*....|....*....|...
gi 345503712   85 --KPQNPSSTMEMWKIREQAKMQAEEVVLHQIV 115
Cdd:pfam14198  80 vtEELKAEDQMEWVRRMNNIRNRAEEIVLNELI 112
 
Name Accession Description Interval E-value
TnpV pfam14198
Transposon-encoded protein TnpV; This family of proteins is functionally uncharacterized. This ...
 6-115 7.88e-31

Transposon-encoded protein TnpV; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 114 and 125 amino acids in length.


Pssm-ID: 433767  Cd Length: 112  Bit Score: 105.65  E-value: 7.88e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345503712    6 TYKEVDGLLYPELTMPDETEDlTKLGRYGRMAMKYLLENEPARYKTLMRFGKMYEKMSAVEEEANQLYDQLEEQYLMKH- 84
Cdd:pfam14198   1 TYTLQGDYLIPNLTLPEEEEE-RPIGKYGRMRLRYLKEHRPGLYTNLLLSGKLNEHLAEIDEQAEERLERLVKQMAEKEg 79

                          90       100       110
                  ....*....|....*....|....*....|...
gi 345503712   85 --KPQNPSSTMEMWKIREQAKMQAEEVVLHQIV 115
Cdd:pfam14198  80 vtEELKAEDQMEWVRRMNNIRNRAEEIVLNELI 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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