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Conserved domains on  [gi|359499935|gb|AEV52535|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Petrogale burbidgei]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 super family cl31798
NADH dehydrogenase subunit 2; Provisional
 1-189 9.34e-80

NADH dehydrogenase subunit 2; Provisional


The actual alignment was detected with superfamily member MTH00105:

Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 240.90  E-value: 9.34e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935   1 APTALMYQISPTLNMKVLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPNLALLNLIIYIITTLTLF 80
Cdd:MTH00105 137 APLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMF 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  81 LMLNFASVTKIKSLTNLWNKSAPMTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSALLNLFFYMRI 160
Cdd:MTH00105 217 MLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRL 296

                        170       180
                 ....*....|....*....|....*....
gi 359499935 161 IYASTLTMFPTTNNSKIQWPYPQAKSINI 189
Cdd:MTH00105 297 IYSTSLTMFPSTNNMKMKWQFENTKPMTL 325
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-189 9.34e-80

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 240.90  E-value: 9.34e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935   1 APTALMYQISPTLNMKVLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPNLALLNLIIYIITTLTLF 80
Cdd:MTH00105 137 APLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMF 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  81 LMLNFASVTKIKSLTNLWNKSAPMTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSALLNLFFYMRI 160
Cdd:MTH00105 217 MLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRL 296

                        170       180
                 ....*....|....*....|....*....
gi 359499935 161 IYASTLTMFPTTNNSKIQWPYPQAKSINI 189
Cdd:MTH00105 297 IYSTSLTMFPSTNNMKMKWQFENTKPMTL 325
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 17-163 6.66e-14

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 68.99  E-value: 6.66e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  17 VLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPNLA----LLNLIIYIITTLTLFLMLNFAS----- 87
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGvsaaLFYLLAYLFMNLGAFAVILLLSrkgge 350

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 359499935  88 VTKIKSLTNLWNKSAPMTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSALLNLFFYMRIIYA 163
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKA 426
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 17-150 3.85e-11

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 60.40  E-value: 3.85e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935   17 VLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPN----LALLNLIIYIITTLTLFLM-----LNFAS 87
Cdd:pfam00361 149 ILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiqAAIFHLLTHGLFSAGLFLCagsviYRRVH 228

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 359499935   88 VTKIKSLTNLWNKSAPMTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSA 150
Cdd:pfam00361 229 TRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 16-187 8.89e-08

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 51.10  E-value: 8.89e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935   16 KVLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMII----IMLINPNLALLNLIIYIITTL---TLFLMLNFASV 88
Cdd:TIGR01770 270 IFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIgllaGTLEGIKAVLFYIFIYALMSLgafGVLSLLRSYKD 349

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935   89 TKIKSLTNL--WNKSAP-MTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSALLNLFFYMRIIYAst 165
Cdd:TIGR01770 350 EWIEYISDFagLFKTNPiLAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKV-- 427

                         170       180
                  ....*....|....*....|...
gi 359499935  166 ltMFPTTNNSKIQW-PYPQAKSI 187
Cdd:TIGR01770 428 --MYFDKPERRIPSnPQSKAQSL 448
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-189 9.34e-80

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 240.90  E-value: 9.34e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935   1 APTALMYQISPTLNMKVLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPNLALLNLIIYIITTLTLF 80
Cdd:MTH00105 137 APLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMF 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  81 LMLNFASVTKIKSLTNLWNKSAPMTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSALLNLFFYMRI 160
Cdd:MTH00105 217 MLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRL 296

                        170       180
                 ....*....|....*....|....*....
gi 359499935 161 IYASTLTMFPTTNNSKIQWPYPQAKSINI 189
Cdd:MTH00105 297 IYSTSLTMFPSTNNMKMKWQFENTKPMTL 325
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-179 1.96e-63

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 199.26  E-value: 1.96e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935   1 APTALMYQISPTlNMKVLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPNLALLNLIIYIITTLTLF 80
Cdd:MTH00135 137 APFALILQIAPT-NPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAF 215

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  81 LMLNFASVTKIKSLTNLWNKSAPMTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSALLNLFFYMRI 160
Cdd:MTH00135 216 LTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRL 295

                        170
                 ....*....|....*....
gi 359499935 161 IYASTLTMFPTTNNSKIQW 179
Cdd:MTH00135 296 SYAMTLTISPNTLNGTTPW 314
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-179 3.13e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 183.20  E-value: 3.13e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935   1 APTALMYQISPTLNMKVLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPNLALLNLIIYIITTLTLF 80
Cdd:MTH00070 137 APMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMF 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  81 LMLNFASVTKIKSLTNLWNKSAPMTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSALLNLFFYMRI 160
Cdd:MTH00070 217 LMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRL 296

                        170
                 ....*....|....*....
gi 359499935 161 IYASTLTMFPTTNNSKIQW 179
Cdd:MTH00070 297 SYAMSLTTSPNTSNSKLYW 315
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-179 5.53e-56

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 180.02  E-value: 5.53e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935   1 APTALMYQISPTLNMKVLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPNLALLNLIIYIITTLTLF 80
Cdd:MTH00112 137 APLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMF 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  81 LMLNFASVTKIKSLTNLWNKSAPMTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSALLNLFFYMRI 160
Cdd:MTH00112 217 LTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRL 296

                        170
                 ....*....|....*....
gi 359499935 161 IYASTLTMFPTTNNSKIQW 179
Cdd:MTH00112 297 TYISTITLPPNTTNMMMKW 315
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-179 2.39e-40

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 139.72  E-value: 2.39e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935   1 APTALMYQISPTLNMKVLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPNLALLNLIIYIITTLTLF 80
Cdd:MTH00200 137 APFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVF 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  81 LMLNFASVTKIKSLTNLWNKSAPMTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSALLNLFFYMRI 160
Cdd:MTH00200 217 LLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRL 296

                        170
                 ....*....|....*....
gi 359499935 161 IYASTLTMFPTTNNSKIQW 179
Cdd:MTH00200 297 SYLTLLTLSPNQINMMSSW 315
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-171 7.56e-34

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 122.73  E-value: 7.56e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935   1 APTALMYQISPTLNMKVLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPNLALLNLIIYIITTLTLF 80
Cdd:MTH00041 137 APLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIF 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  81 LMLNFASVTKIKSLTNLWNKSAPMTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSALLNLFFYMRI 160
Cdd:MTH00041 217 LIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRI 296

                        170
                 ....*....|.
gi 359499935 161 IYASTLTMFPT 171
Cdd:MTH00041 297 SFNTSLTLFPQ 307
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 6-177 1.23e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 92.58  E-value: 1.23e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935   6 MYQISPTLNMKVLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPNLALLNLIIYIITTLTLFLMLNF 85
Cdd:MTH00160 134 LILLSYLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNK 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  86 ASVTKIKSLTNLWNKSAPMTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSALLNLFFYMRIIYAST 165
Cdd:MTH00160 214 FNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSL 293

                        170
                 ....*....|..
gi 359499935 166 LTMFPTTNNSKI 177
Cdd:MTH00160 294 MLNYNKNKWNLK 305
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-168 4.53e-22

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 90.99  E-value: 4.53e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935   1 APTALMYQISPTLNMKVLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPNLALLNLIIYIITTLTLF 80
Cdd:MTH00011 133 APLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLM 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  81 LMLNFASVTKIKSLTNLWNKSAPMTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSALLNLFFYMRI 160
Cdd:MTH00011 213 LLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNL 292


                 ....*...
gi 359499935 161 IYASTLTM 168
Cdd:MTH00011 293 IFNFMYLS 300
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-189 8.05e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 87.63  E-value: 8.05e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935   1 APTALMYQISPTLNM-KVLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPNLALLNLIIYIITTLTL 79
Cdd:MTH00144 129 APLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFL 208

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  80 FLMLNFASVTKIKSLTNLwNKSAPMTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSALLNLFFYMR 159
Cdd:MTH00144 209 FFSLWSGDSGSMKDLGSL-KPSYKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLS 287

                        170       180       190
                 ....*....|....*....|....*....|
gi 359499935 160 IIYASTLTMFPTTNNSKIQWPYPQAKSINI 189
Cdd:MTH00144 288 VFFSSFLSSSKSKKSNSSKVLNSSIISLNL 317
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 14-164 3.89e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 77.41  E-value: 3.89e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  14 NMKVLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPNLALLNLIIYIITTLTLFLMLNFASVTKIKS 93
Cdd:MTH00197 135 SFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ 214

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 359499935  94 LTNLWNKSAPMTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSALLNLFFYMRIIYAS 164
Cdd:MTH00197 215 QYSNPESMSSNLVFLGLSFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKS 285
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 17-163 6.66e-14

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 68.99  E-value: 6.66e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  17 VLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPNLA----LLNLIIYIITTLTLFLMLNFAS----- 87
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGvsaaLFYLLAYLFMNLGAFAVILLLSrkgge 350

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 359499935  88 VTKIKSLTNLWNKSAPMTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSALLNLFFYMRIIYA 163
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKA 426
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 4-162 1.59e-13

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 67.73  E-value: 1.59e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935   4 ALMYQISPTLNmkVLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPN----LALLNLIIYIITTLTL 79
Cdd:MTH00199 238 SILVQIGPVTN--VVLICAVLSIIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSFesiqASLIYMIIYVIMSICS 315

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  80 FLMLNFASVTK--IKSLTNLWNKSAPMTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSALLNLFFY 157
Cdd:MTH00199 316 FSIILSLKLTKglIVEVSGLSRKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYY 395


                 ....*
gi 359499935 158 MRIIY 162
Cdd:MTH00199 396 VRVVQ 400
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
17-161 2.73e-12

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 64.07  E-value: 2.73e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  17 VLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPNLA----LLNLIIYIITTLTLFLMLNFAS----- 87
Cdd:PRK05777 272 VLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGysavLFYLLAYLFMTLGAFGVISLLRrkgge 351

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 359499935  88 VTKIKSLTNLWNKSAPMTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSALLNLFFYMRII 161
Cdd:PRK05777 352 AESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVI 425
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 9-161 3.64e-11

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 60.81  E-value: 3.64e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935   9 ISPTLNMKVLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINP----NLALLNLIIYIITTLTLFLMLN 84
Cdd:MTH00196 146 VSIGLNVNILLIGGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIIL 225

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 359499935  85 FASVTK--IKSLTNLWNKSAPMTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSALLNLFFYMRII 161
Cdd:MTH00196 226 ALNVYKnlIIEFSGLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 17-150 3.85e-11

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 60.40  E-value: 3.85e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935   17 VLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPN----LALLNLIIYIITTLTLFLM-----LNFAS 87
Cdd:pfam00361 149 ILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiqAAIFHLLTHGLFSAGLFLCagsviYRRVH 228

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 359499935   88 VTKIKSLTNLWNKSAPMTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSA 150
Cdd:pfam00361 229 TRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 17-162 3.98e-10

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 57.85  E-value: 3.98e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  17 VLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPNLALLNLIIYII----TTLTLFL----MLNFASV 88
Cdd:COG0651  274 LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLnhalAKALLFLaagaIERATGT 353

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 359499935  89 TKIKSLTNLWNKSAPMTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSALLNLFFYMRIIY 162
Cdd:COG0651  354 RDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFG 427
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 17-163 5.93e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 54.50  E-value: 5.93e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  17 VLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPNLALLNLIIYI----ITTLTLFLMLNFASVT--- 89
Cdd:PRK08375 273 LLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLAAGAIEVTygt 352

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 359499935  90 -KIKSLTNLWNKSAPMTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSALLNLFFYMRIIYA 163
Cdd:PRK08375 353 rRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYR 427
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 16-187 8.89e-08

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 51.10  E-value: 8.89e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935   16 KVLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMII----IMLINPNLALLNLIIYIITTL---TLFLMLNFASV 88
Cdd:TIGR01770 270 IFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIgllaGTLEGIKAVLFYIFIYALMSLgafGVLSLLRSYKD 349

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935   89 TKIKSLTNL--WNKSAP-MTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSALLNLFFYMRIIYAst 165
Cdd:TIGR01770 350 EWIEYISDFagLFKTNPiLAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKV-- 427

                         170       180
                  ....*....|....*....|...
gi 359499935  166 ltMFPTTNNSKIQW-PYPQAKSI 187
Cdd:TIGR01770 428 --MYFDKPERRIPSnPQSKAQSL 448
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 17-162 5.01e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 48.81  E-value: 5.01e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  17 VLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPNLALLNLIIYIIT----TLTLFL----MLNFASV 88
Cdd:PRK12667 297 ILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINhaiaKSLLFLasgvFIHAAGT 376

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 359499935  89 TKIKSLTNLWNKSAPMTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSALLNLFFYMRIIY 162
Cdd:PRK12667 377 RDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWY 450
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 16-161 5.90e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 48.58  E-value: 5.90e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  16 KVLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPNLALLNLIIYIIT----TLTLFLMLNFASV--- 88
Cdd:PRK12662 280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNhsivKSALFMVSGSISYhfg 359

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 359499935  89 -TKIKSLTNLWNKSAPMTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSALLNLFFYMRII 161
Cdd:PRK12662 360 tTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKIV 433
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-83 3.98e-06

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 46.39  E-value: 3.98e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935   3 TALMYQISPTLNMKVLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPNLALLN----LIIYIITTLT 78
Cdd:MTH00198 344 TVYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQAswtyAVTYLVSALA 423


                 ....*
gi 359499935  79 LFLML 83
Cdd:MTH00198 424 SFTVI 428
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 17-162 1.52e-05

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 44.55  E-value: 1.52e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935   17 VLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPNLALLNLIIYI----ITTLTLFLMLNF----ASV 88
Cdd:TIGR01972 271 VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMishgLITAALFLLVGVlyerAHT 350

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 359499935   89 TKIKSLTNLWNKsAPMTTAILLTLLSLGGLPPLT-GFMPKWLILQELVSNN---NIIMATLMALSALLNLFFYMRIIY 162
Cdd:TIGR01972 351 RDIAKYGGLANK-MPVLAAFFMLFAMASLGLPGTsGFVGEFLILLGSFKVNpvvAFLAALGIVLAAAYMLTLYKRVFF 427
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 17-56 5.71e-05

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 42.76  E-value: 5.71e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 359499935  17 VLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMII 56
Cdd:COG1008  277 LLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLL 316
ndhB CHL00049
NADH dehydrogenase subunit 2
 17-74 1.35e-04

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 41.53  E-value: 1.35e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 359499935  17 VLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMII-IMLINPNLALLNLIIYII 74
Cdd:CHL00049 282 LLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNDGYASMITYML 340
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 155-188 3.15e-04

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 37.24  E-value: 3.15e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 359499935  155 FFYMRIIYASTLTMFPTTNNSKIQWPYPQAKSIN 188
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTL 34
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
17-77 3.22e-04

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 40.42  E-value: 3.22e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 359499935  17 VLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPNLALLNLIIYIITTL 77
Cdd:PRK02504 278 LFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVAGTEAGYASMVFYLLAYL 338
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
17-160 4.21e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 40.32  E-value: 4.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  17 VLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPNLALLNLIIYIITTLTLFLMLNFAS--------V 88
Cdd:PRK12663 274 LLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAgslvrltgY 353

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 359499935  89 TKIKSLTNLWNKSAPMTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSALLNLFFYMRI 160
Cdd:PRK12663 354 RSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRI 425
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 7-163 7.64e-04

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 39.59  E-value: 7.64e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935   7 YQISPTLNMkVLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPNLALLNLIIYIIT--TLTLFLMLN 84
Cdd:PRK08668 265 YRGVPLFNY-ILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNhaLFKGLFFLI 343

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  85 FASV------TKIKSLTNLWNKsAPMTTAILLTLLSLGGLPPLT-GFMPKWLILQELVSNNNIIMATLMALSALLNLFFY 157
Cdd:PRK08668 344 FAAViyrtgtTKISEMGGLIEK-MPFTFAMYLVAIISLAGIPPMsGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYV 422


                 ....*.
gi 359499935 158 MRIIYA 163
Cdd:PRK08668 423 FRPLAG 428
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 18-181 1.59e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 38.26  E-value: 1.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  18 LIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIII--MLINPNL--ALLNLIIYIITTLTLFL-MLNFASVTKIK 92
Cdd:PRK06589 283 LIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSafILTPKALgaAILHLVSHSFAKICLFYsMGSIYSLKKED 362

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  93 SLTNLWNKSAPM---TTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMAL----SALLNLFFYMRIIYAST 165
Cdd:PRK06589 363 QVDKLHGTSKSFpliSFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLvviaSSILSALYLLKILSSIY 442

                        170
                 ....*....|....*.
gi 359499935 166 LTMFPTTNNSKIQWPY 181
Cdd:PRK06589 443 KPSLSENSFITKSLPY 458
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 17-56 2.76e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 37.70  E-value: 2.76e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 359499935  17 VLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMII 56
Cdd:PRK12561 253 ALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLL 292
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-176 3.57e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 37.36  E-value: 3.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935   1 APTALMyqisptlnmkVLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINP-NLALLNLIIYIITTLTL 79
Cdd:MTH00020 270 APLALI----------IVTIVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHySISLFHLMNHAFFKALL 339

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  80 FL--------MLNFASVTKIKSLTnlwnKSAPMT-TAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMAT-LMALS 149
Cdd:MTH00020 340 FLsagsvihaLSDEQDMRKMGGLI----SFLPLTyIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYwLGCFS 415

                        170       180
                 ....*....|....*....|....*..
gi 359499935 150 ALLNLFFYMRIIYastLTMFPTTNNSK 176
Cdd:MTH00020 416 ALLTAFYSIRLIY---LTFLSNTNLKK 439
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 17-57 4.28e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 37.21  E-value: 4.28e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 359499935  17 VLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIII 57
Cdd:PRK12644 269 TVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVL 309
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 15-163 5.91e-03

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 36.67  E-value: 5.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359499935  15 MKVLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMIIIMLINPNLAL----LNLIIYIITTLTLFLMLNFASV-- 88
Cdd:PRK08377 273 LKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVdagvFHMINHAIVKALLFLAVGYVGItl 352

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 359499935  89 --TKIKSLTNLWNKSAPMTTAILLTLLSLGGLPPLTGFMPKWLILQELVSNNNIIMATLMALSALLNLFFYMRIIYA 163
Cdd:PRK08377 353 ggTEIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLGASVVEAVYYFRLIHT 429
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 17-56 7.67e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 36.33  E-value: 7.67e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 359499935  17 VLIILASLSTILGGWGGLNQTHLRKILAYSSIGHMGWMII 56
Cdd:PRK05846 279 IIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTL 318
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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