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Conserved domains on  [gi|378808910|gb|AFC53044|]
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ribose-5-phosphate isomerase B [Mycobacterium paraintracellulare]

Protein Classification

RpiB/LacA/LacB family sugar-phosphate isomerase( domain architecture ID 10012451)

RpiB/LacA/LacB family sugar-phosphate isomerase similar to ribose 5-phosphate isomerase B, which catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK05571 PRK05571
ribose-5-phosphate isomerase B; Provisional
 1-147 7.18e-85

ribose-5-phosphate isomerase B; Provisional


:

Pssm-ID: 235509  Cd Length: 148  Bit Score: 245.46  E-value: 7.18e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378808910   1 MRVYLGSDHAGFELKQQIIEHLAKSGHEPIDCGAFTYDADDDYPAFCIATATRTVADPDSLGIVLGGSGNGEQIAANKVP 80
Cdd:PRK05571   1 MKIAIGSDHAGFELKEEIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIAANKVK 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 378808910  81 GARCALAWSVETASLAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWSkAERHQRRIDILAEYER 147
Cdd:PRK05571  81 GIRAALCHDTYSAHLAREHNNANVLALGARVIGPELAKDIVDAFLATEFE-GGRHQRRIDKIDEYEA 146
 
Name Accession Description Interval E-value
PRK05571 PRK05571
ribose-5-phosphate isomerase B; Provisional
 1-147 7.18e-85

ribose-5-phosphate isomerase B; Provisional


Pssm-ID: 235509  Cd Length: 148  Bit Score: 245.46  E-value: 7.18e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378808910   1 MRVYLGSDHAGFELKQQIIEHLAKSGHEPIDCGAFTYDADDDYPAFCIATATRTVADPDSLGIVLGGSGNGEQIAANKVP 80
Cdd:PRK05571   1 MKIAIGSDHAGFELKEEIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIAANKVK 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 378808910  81 GARCALAWSVETASLAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWSkAERHQRRIDILAEYER 147
Cdd:PRK05571  81 GIRAALCHDTYSAHLAREHNNANVLALGARVIGPELAKDIVDAFLATEFE-GGRHQRRIDKIDEYEA 146
RpiB COG0698
Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]; Ribose 5-phosphate ...
 1-149 1.79e-72

Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]; Ribose 5-phosphate isomerase RpiB is part of the Pathway/BioSystem: Pentose phosphate pathway


Pssm-ID: 440462  Cd Length: 149  Bit Score: 214.18  E-value: 1.79e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378808910   1 MRVYLGSDHAGFELKQQIIEHLAKSGHEPIDCGAFTYDaDDDYPAFCIATATRTVADPDSLGIVLGGSGNGEQIAANKVP 80
Cdd:COG0698    1 MKIAIGSDHAGFELKEAIKEYLEEKGHEVVDFGTYSED-SVDYPDFAIKVAEAVASGEADRGILICGTGIGMSIAANKVP 79

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 378808910  81 GARCALAWSVETASLAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWSkAERHQRRIDILAEYERTH 149
Cdd:COG0698   80 GIRAALCHDPYSARLAREHNDANVLCLGARVIGPELAKEIVDAFLATEFE-GGRHQRRVDKISELEKEN 147
rpiB_lacA_lacB TIGR00689
sugar-phosphate isomerase, RpiB/LacA/LacB family; Proteins of known function in this family ...
 3-148 4.81e-72

sugar-phosphate isomerase, RpiB/LacA/LacB family; Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to complete the pentose phosphate pathway.


Pssm-ID: 129772  Cd Length: 144  Bit Score: 213.01  E-value: 4.81e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378808910    3 VYLGSDHAGFELKQQIIEHLAKSGHEPIDCGaFTYDADDDYPAFCIATATRTVADPDSLGIVLGGSGNGEQIAANKVPGA 82
Cdd:TIGR00689   1 IAIGSDHAGLELKSEIIEHLKQKGHEVIDCG-TLYDERVDYPDYAKLVADKVVAGEVSLGILICGTGIGMSIAANKFKGI 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 378808910   83 RCALAWSVETASLAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWSkAERHQRRIDILAEYERT 148
Cdd:TIGR00689  80 RAALCVDEYTAALARQHNDANVLCLGSRVVGVELALSIVDAFLTTQFE-GGRHQRRIDKIIEYERE 144
LacAB_rpiB pfam02502
Ribose/Galactose Isomerase; This family of proteins contains the sugar isomerase enzymes ...
 3-138 1.82e-62

Ribose/Galactose Isomerase; This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).


Pssm-ID: 460573  Cd Length: 134  Bit Score: 188.36  E-value: 1.82e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378808910    3 VYLGSDHAGFELKQQIIEHLAKSGHEPIDCGAFTyDADDDYPAFCIATATRTVADPDSLGIVLGGSGNGEQIAANKVPGA 82
Cdd:pfam02502   1 IAIGSDHAGFELKEEIKEYLEEKGHEVIDFGTYS-EESVDYPDYAHKVAEAVASGEADRGILICGTGIGMSIAANKVPGI 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 378808910   83 RCALAWSVETASLAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWSKaERHQRR 138
Cdd:pfam02502  80 RAALCHDPYSAKLAREHNDANVLCLGARVIGPELAKEIVDAFLNTEFEG-GRHQRR 134
 
Name Accession Description Interval E-value
PRK05571 PRK05571
ribose-5-phosphate isomerase B; Provisional
 1-147 7.18e-85

ribose-5-phosphate isomerase B; Provisional


Pssm-ID: 235509  Cd Length: 148  Bit Score: 245.46  E-value: 7.18e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378808910   1 MRVYLGSDHAGFELKQQIIEHLAKSGHEPIDCGAFTYDADDDYPAFCIATATRTVADPDSLGIVLGGSGNGEQIAANKVP 80
Cdd:PRK05571   1 MKIAIGSDHAGFELKEEIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIAANKVK 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 378808910  81 GARCALAWSVETASLAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWSkAERHQRRIDILAEYER 147
Cdd:PRK05571  81 GIRAALCHDTYSAHLAREHNNANVLALGARVIGPELAKDIVDAFLATEFE-GGRHQRRIDKIDEYEA 146
RpiB COG0698
Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]; Ribose 5-phosphate ...
 1-149 1.79e-72

Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]; Ribose 5-phosphate isomerase RpiB is part of the Pathway/BioSystem: Pentose phosphate pathway


Pssm-ID: 440462  Cd Length: 149  Bit Score: 214.18  E-value: 1.79e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378808910   1 MRVYLGSDHAGFELKQQIIEHLAKSGHEPIDCGAFTYDaDDDYPAFCIATATRTVADPDSLGIVLGGSGNGEQIAANKVP 80
Cdd:COG0698    1 MKIAIGSDHAGFELKEAIKEYLEEKGHEVVDFGTYSED-SVDYPDFAIKVAEAVASGEADRGILICGTGIGMSIAANKVP 79

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 378808910  81 GARCALAWSVETASLAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWSkAERHQRRIDILAEYERTH 149
Cdd:COG0698   80 GIRAALCHDPYSARLAREHNDANVLCLGARVIGPELAKEIVDAFLATEFE-GGRHQRRVDKISELEKEN 147
rpiB_lacA_lacB TIGR00689
sugar-phosphate isomerase, RpiB/LacA/LacB family; Proteins of known function in this family ...
 3-148 4.81e-72

sugar-phosphate isomerase, RpiB/LacA/LacB family; Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to complete the pentose phosphate pathway.


Pssm-ID: 129772  Cd Length: 144  Bit Score: 213.01  E-value: 4.81e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378808910    3 VYLGSDHAGFELKQQIIEHLAKSGHEPIDCGaFTYDADDDYPAFCIATATRTVADPDSLGIVLGGSGNGEQIAANKVPGA 82
Cdd:TIGR00689   1 IAIGSDHAGLELKSEIIEHLKQKGHEVIDCG-TLYDERVDYPDYAKLVADKVVAGEVSLGILICGTGIGMSIAANKFKGI 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 378808910   83 RCALAWSVETASLAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWSkAERHQRRIDILAEYERT 148
Cdd:TIGR00689  80 RAALCVDEYTAALARQHNDANVLCLGSRVVGVELALSIVDAFLTTQFE-GGRHQRRIDKIIEYERE 144
RPI_actino TIGR02133
ribose 5-phosphate isomerase; This family is a member of the RpiB/LacA/LacB subfamily ...
 1-148 2.44e-64

ribose 5-phosphate isomerase; This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.


Pssm-ID: 273989  Cd Length: 148  Bit Score: 193.44  E-value: 2.44e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378808910    1 MRVYLGSDHAGFELKQQIIEHLAKSGHEPIDCGAFTYDADDDYPAFCIATATRTVADPDSLGIVLGGSGNGEQIAANKVP 80
Cdd:TIGR02133   1 MRVVLGHDHAGFEYKEALWLDLAAHEPEVCDVGVYDADDDDDYPCFCIAAAEAVARDAADLGIVIGGSGNGEAIAANKVK 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 378808910   81 GARCALAWSVETASLAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWSKAERHQRRIDILAEYERT 148
Cdd:TIGR02133  81 GARAALAWDTASAGRARLHNNANVVGAGMRMHGLEEAFRLVFEFLGFEFDARSRHARRIDSISEYEGD 148
LacAB_rpiB pfam02502
Ribose/Galactose Isomerase; This family of proteins contains the sugar isomerase enzymes ...
 3-138 1.82e-62

Ribose/Galactose Isomerase; This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).


Pssm-ID: 460573  Cd Length: 134  Bit Score: 188.36  E-value: 1.82e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378808910    3 VYLGSDHAGFELKQQIIEHLAKSGHEPIDCGAFTyDADDDYPAFCIATATRTVADPDSLGIVLGGSGNGEQIAANKVPGA 82
Cdd:pfam02502   1 IAIGSDHAGFELKEEIKEYLEEKGHEVIDFGTYS-EESVDYPDYAHKVAEAVASGEADRGILICGTGIGMSIAANKVPGI 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 378808910   83 RCALAWSVETASLAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWSKaERHQRR 138
Cdd:pfam02502  80 RAALCHDPYSAKLAREHNDANVLCLGARVIGPELAKEIVDAFLNTEFEG-GRHQRR 134
PTZ00215 PTZ00215
ribose 5-phosphate isomerase; Provisional
 1-149 6.70e-38

ribose 5-phosphate isomerase; Provisional


Pssm-ID: 185516  Cd Length: 151  Bit Score: 126.67  E-value: 6.70e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378808910   1 MRVYLGSDHAGFELKQQIIEHLAKSGHE--PIDCGAFTyDADDDYPAFCIATATRTVADPDSLGIVLGGSGNGEQIAANK 78
Cdd:PTZ00215   3 KKVAIGSDHAGFDLKNEIIDYIKNKGKEykIEDMGTYT-AESVDYPDFAEKVCEEVLKGEADTGILVCGSGIGISIAANK 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 378808910  79 VPGARCALAWSVETASLAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWsKAERHQRRIDILAEYERTH 149
Cdd:PTZ00215  82 VKGIRCALCHDHYTARMSRQHNNANVLAFGGRTTGIEVAKEIIDTFLSTPF-EGGRHTERIDKISAIEEEN 151
PRK08622 PRK08622
galactose-6-phosphate isomerase subunit LacB; Reviewed
 1-150 3.82e-27

galactose-6-phosphate isomerase subunit LacB; Reviewed


Pssm-ID: 181506  Cd Length: 171  Bit Score: 99.72  E-value: 3.82e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378808910   1 MRVYLGSDHAGFELKQQIIEHLAKSGHEPIDCGafTYD-ADDDYPAFCIATATRTVADPDSLGIVLGGSGNGEQIAANKV 79
Cdd:PRK08622   1 MKIAIGCDHIVTDEKMAVSDYLKSKGHEVIDVG--TYDfTRTHYPIFGKKVGEAVASGEADLGVCICGTGVGISNAVNKV 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 378808910  80 PGARCALAWSVETASLAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWSKAERHQRRIDILAEYERTHQ 150
Cdd:PRK08622  79 PGIRSALVRDMTSALYAKEELNANVIGFGGKITGELLMCDIIDAFINAEYKPTEENKKLIEKIDHLEKPNA 149
rpiB TIGR01120
ribose 5-phosphate isomerase B; Involved in the non-oxidative branch of the pentose phospate ...
 2-146 1.86e-25

ribose 5-phosphate isomerase B; Involved in the non-oxidative branch of the pentose phospate pathway. [Energy metabolism, Pentose phosphate pathway]


Pssm-ID: 130190  Cd Length: 143  Bit Score: 94.60  E-value: 1.86e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378808910    2 RVYLGSDHAGFELKQQIIEHLAKSGHEPIDCGAFTYDADDdYPAFCIATATRTVADPDSLGIVLGGSGNGEQIAANKVPG 81
Cdd:TIGR01120   1 KIAIGSDHAGFILKEEIKAFLVERGVKVIDKGTWSSERTD-YPHYAKQVALAVAGGEVDGGILICGTGIGMSIAANKFAG 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 378808910   82 ARCALAWSVETASLAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWSKAeRHQRRIDILAEYE 146
Cdd:TIGR01120  80 IRAALCSEPYMAQMSRLHNDANVLCLGERVVGLELAKSIVDAWLGTQFEGG-RHQQRVEAITAIE 143
PRK08621 PRK08621
galactose-6-phosphate isomerase subunit LacA; Reviewed
 1-142 2.61e-24

galactose-6-phosphate isomerase subunit LacA; Reviewed


Pssm-ID: 181505  Cd Length: 142  Bit Score: 91.70  E-value: 2.61e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378808910   1 MRVYLGSDHAGFELKQQIIEHLAKSGHEPIDcgaFTYDADDDYPAFCIATATRTVADPDSLGIVLGGSGNGEQIAANKVP 80
Cdd:PRK08621   1 MAIIIGADKAGFELKEVVKDYLEDNKYEVVD---VTEEGAEDFVDSTLAVAKEVNKSEDNLGIVIDAYGAGSFMVATKIK 77

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 378808910  81 GARCALAWSVETASLAREHNNAQLIGIGGRMhtVAEALA--IVDAFVTTPWSkAERHQRRIDIL 142
Cdd:PRK08621  78 GMVAAEVSDERSAYMTRGHNNARMITMGSEI--VGDGLAknIIKGFVEGKYD-GGRHQIRVDML 138
PRK12615 PRK12615
galactose-6-phosphate isomerase subunit LacB; Reviewed
 1-153 8.59e-21

galactose-6-phosphate isomerase subunit LacB; Reviewed


Pssm-ID: 171610  Cd Length: 171  Bit Score: 83.54  E-value: 8.59e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378808910   1 MRVYLGSDHAGFELKQQIIEHLAKSGHEPIDCGafTYD-ADDDYPAFCIATATRTVADPDSLGIVLGGSGNGEQIAANKV 79
Cdd:PRK12615   1 MKIAIGCDHIVTNEKMAVSDFLKSKGYDVIDCG--TYDhTRTHYPIFGKKVGEAVVNGQADLGVCICGTGVGINNAVNKV 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 378808910  80 PGARCALAWSVETASLAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWSKAERHQRRIDILA--EYERTHQAPP 153
Cdd:PRK12615  79 PGIRSALVRDMTTALYAKEELNANVIGFGGKITGELLMCDIIDAFIKAEYKETEENKKLIAKIAhlESHHANQEDP 154
PRK12613 PRK12613
galactose-6-phosphate isomerase subunit LacA; Provisional
 1-142 7.20e-18

galactose-6-phosphate isomerase subunit LacA; Provisional


Pssm-ID: 171609  Cd Length: 141  Bit Score: 74.97  E-value: 7.20e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378808910   1 MRVYLGSDHAGFELKQQIIEHLAKSGHEPIDcgafTYDADDDYPAFCIATATRTVADPDSLGIVLGGSGNGEQIAANKVP 80
Cdd:PRK12613   1 MAIILGADAHGNALKELIKSFLQEEGYDIID----VTDINSDFIDNTLAVAKAVNEAEGRLGIMVDAYGAGPFMVATKLK 76

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 378808910  81 GARCALAWSVETASLAREHNNAQLIGIGGRMhtVAEALA--IVDAFVTTPWSKAeRHQRRIDIL 142
Cdd:PRK12613  77 GMVAAEVSDERSAYMTRGHNNARMITMGAEI--VGPELAknIAKGFVTGPYDGG-RHQIRVDML 137
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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