|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11181 |
PRK11181 |
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB; |
1-241 |
4.14e-125 |
|
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;
Pssm-ID: 183021 [Multi-domain] Cd Length: 244 Bit Score: 354.66 E-value: 4.14e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 1 MYGFHAVQAALEAPVTRVSEIWLADERHDPRVEAILTIAASHSVPVQRVSRKALEQLVPDLQHQGCVARVKPLETLSETQ 80
Cdd:PRK11181 5 IYGIHAVQALLERAPERFIEVFVLKGREDKRLLPLINELEAQGIVIQLANRQTLDEKAEGAVHQGIIARVKPGRQLQEND 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 81 LMALLADlTEAPFLLILDGVQDPHNLGACLRTAEAAGVHAVIAPKDRAATLTPTAIKISSGAAERVPFVQVTNLARVLKD 160
Cdd:PRK11181 85 LPDLLAS-LEQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAETVPLIRVTNLARTMRM 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 161 LQQHGIWLVGTSGEADKNLYQADLTGPLGIVLGAEGKGIRRLTREHCDDVVLIPMQGQAESLNVSVAAGVCLFEATRQRG 240
Cdd:PRK11181 164 LQEKNIWIVGTAGEADHTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS 243
|
.
gi 386271147 241 L 241
Cdd:PRK11181 244 A 244
|
|
| SpoU |
COG0566 |
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ... |
2-240 |
4.42e-108 |
|
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440332 [Multi-domain] Cd Length: 265 Bit Score: 312.13 E-value: 4.42e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 2 YGFHAVQAALEAPVtRVSEIWLADERHDpRVEAILTIAASHSVPVQRVSRKALEQLVPDLQHQGCVARVKPLETLSetqL 81
Cdd:COG0566 30 EGRHAVEEALKAGR-EIEELLVTEGALD-RLAELLALAKAAGIPVYEVSREVLDKLSGTETHQGVLAVVRPPEYAD---L 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 82 MALLADLTEAPFLLILDGVQDPHNLGACLRTAEAAGVHAVIAPKDRAATLTPTAIKISSGAAERVPFVQVTNLARVLKDL 161
Cdd:COG0566 105 EDLLAEAGEPPLLLVLDGVQDPGNLGAILRSAAAFGVDGVILPKRRADPYNPKVVRASAGALFHVPVARVTNLADALEEL 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 386271147 162 QQHGIWLVGTSGEADKNLYQADLTGPLGIVLGAEGKGIRRLTREHCDDVVLIPMQGQAESLNVSVAAGVCLFEATRQRG 240
Cdd:COG0566 185 KEAGFWVVGTDLDGEASLYEVDLPGPVALVLGNEGKGLSRLVLEACDELVRIPMAGGVESLNVAVAAAILLYEAARQRR 263
|
|
| rRNA_methyl_3 |
TIGR00186 |
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases ... |
1-239 |
1.52e-95 |
|
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129290 [Multi-domain] Cd Length: 237 Bit Score: 279.23 E-value: 1.52e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 1 MYGFHAVQAALEAPvtrvSEIWLADERHDPRVEAILTIAASHSVPVQRVSRKALEQLVPDLQHQGCVARVKPLETLSETQ 80
Cdd:TIGR00186 4 LYGKNAVLEALLNQ----QRVFILKGLESKRLKKLIQLAKKQGINIQLVDRQKLDQLTKGGNHQGIAAKVKPILYKDLND 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 81 LMALLADLtEAPFLLILDGVQDPHNLGACLRTAEAAGVHAVIAPKDRAATLTPTAIKISSGAAERVPFVQVTNLARVLKD 160
Cdd:TIGR00186 80 LYKTAKSK-KQPFLLILDEITDPHNLGAILRTAEAFGVDGVILPKRRSAPLNSTVVKTSSGAVEYVPLARVTNLSRTITK 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 386271147 161 LQQHGIWLVGTSGEADKNLYQADLTGPLGIVLGAEGKGIRRLTREHCDDVVLIPMQGQAESLNVSVAAGVCLFEATRQR 239
Cdd:TIGR00186 159 LKESGFWTVGTDLDAQDTLYQVKLTKPLALVVGNEGEGVSRLIKENCDFLIKIPMAGKVDSLNVSVAAGILLFEIKRQR 237
|
|
| SpoU-like_RlmB |
cd18103 |
SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the ... |
93-235 |
1.09e-85 |
|
SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the methylation of guanosine 2251, a modification conserved in the peptidyltransferase domain of 23S rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349976 Cd Length: 143 Bit Score: 250.76 E-value: 1.09e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 93 FLLILDGVQDPHNLGACLRTAEAAGVHAVIAPKDRAATLTPTAIKISSGAAERVPFVQVTNLARVLKDLQQHGIWLVGTS 172
Cdd:cd18103 1 LLLILDGITDPHNLGAIIRSAEAFGVDGVIIPKRRSAPLTPTVAKASAGALEHLPIARVTNLARALEELKEAGFWIYGAD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 386271147 173 GEADKNLYQADLTGPLGIVLGAEGKGIRRLTREHCDDVVLIPMQGQAESLNVSVAAGVCLFEA 235
Cdd:cd18103 81 GEAEKSLYDVDLTGPLALVLGSEGKGLRRLVLKNCDFLVKIPMAGKVDSLNVSVAAGIILYEI 143
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
92-233 |
3.12e-55 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 173.49 E-value: 3.12e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 92 PFLLILDGVQDPHNLGACLRTAEAAGVHAVIAPKDRAATL-TPTAIKISSGAAERVPFVQVTNLARVLKDLQQHGIWLVG 170
Cdd:pfam00588 1 PLVVVLDNIQDPGNLGAIIRTAAAFGADGLILVEPRSADPyNPKAIRASAGALFHLPLVVVDNLEEALKDLKEAGYAVVA 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 386271147 171 TSGEAdKNLYQADLTGPLGIVLGAEGKGIRRLTREHCDDVVLIPMQGQAESLNVSVAAGVCLF 233
Cdd:pfam00588 81 TSLGG-KSLYEIDFPKKVALVFGNEGTGLSNEVLELCDRLVRIPMSGDVESLNVAVAAAIALY 142
|
|
| SpoU_sub_bind |
smart00967 |
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose ... |
2-72 |
9.68e-16 |
|
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose methyltransferase substrate binding domain.
Pssm-ID: 214943 [Multi-domain] Cd Length: 70 Bit Score: 69.49 E-value: 9.68e-16
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 386271147 2 YGFHAVQAALEAPVtRVSEIWLADERHDpRVEAILTIAASHSVPVQRVSRKALEQLVPDLQHQGCVARVKP 72
Cdd:smart00967 2 EGRHAVEEALKSGR-RIKELYLTEGRAE-RLKELLKLAKERGIKVIEVSKKELDKLSGTANHQGVVAVVKP 70
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11181 |
PRK11181 |
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB; |
1-241 |
4.14e-125 |
|
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;
Pssm-ID: 183021 [Multi-domain] Cd Length: 244 Bit Score: 354.66 E-value: 4.14e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 1 MYGFHAVQAALEAPVTRVSEIWLADERHDPRVEAILTIAASHSVPVQRVSRKALEQLVPDLQHQGCVARVKPLETLSETQ 80
Cdd:PRK11181 5 IYGIHAVQALLERAPERFIEVFVLKGREDKRLLPLINELEAQGIVIQLANRQTLDEKAEGAVHQGIIARVKPGRQLQEND 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 81 LMALLADlTEAPFLLILDGVQDPHNLGACLRTAEAAGVHAVIAPKDRAATLTPTAIKISSGAAERVPFVQVTNLARVLKD 160
Cdd:PRK11181 85 LPDLLAS-LEQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAETVPLIRVTNLARTMRM 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 161 LQQHGIWLVGTSGEADKNLYQADLTGPLGIVLGAEGKGIRRLTREHCDDVVLIPMQGQAESLNVSVAAGVCLFEATRQRG 240
Cdd:PRK11181 164 LQEKNIWIVGTAGEADHTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS 243
|
.
gi 386271147 241 L 241
Cdd:PRK11181 244 A 244
|
|
| SpoU |
COG0566 |
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ... |
2-240 |
4.42e-108 |
|
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440332 [Multi-domain] Cd Length: 265 Bit Score: 312.13 E-value: 4.42e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 2 YGFHAVQAALEAPVtRVSEIWLADERHDpRVEAILTIAASHSVPVQRVSRKALEQLVPDLQHQGCVARVKPLETLSetqL 81
Cdd:COG0566 30 EGRHAVEEALKAGR-EIEELLVTEGALD-RLAELLALAKAAGIPVYEVSREVLDKLSGTETHQGVLAVVRPPEYAD---L 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 82 MALLADLTEAPFLLILDGVQDPHNLGACLRTAEAAGVHAVIAPKDRAATLTPTAIKISSGAAERVPFVQVTNLARVLKDL 161
Cdd:COG0566 105 EDLLAEAGEPPLLLVLDGVQDPGNLGAILRSAAAFGVDGVILPKRRADPYNPKVVRASAGALFHVPVARVTNLADALEEL 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 386271147 162 QQHGIWLVGTSGEADKNLYQADLTGPLGIVLGAEGKGIRRLTREHCDDVVLIPMQGQAESLNVSVAAGVCLFEATRQRG 240
Cdd:COG0566 185 KEAGFWVVGTDLDGEASLYEVDLPGPVALVLGNEGKGLSRLVLEACDELVRIPMAGGVESLNVAVAAAILLYEAARQRR 263
|
|
| rRNA_methyl_3 |
TIGR00186 |
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases ... |
1-239 |
1.52e-95 |
|
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129290 [Multi-domain] Cd Length: 237 Bit Score: 279.23 E-value: 1.52e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 1 MYGFHAVQAALEAPvtrvSEIWLADERHDPRVEAILTIAASHSVPVQRVSRKALEQLVPDLQHQGCVARVKPLETLSETQ 80
Cdd:TIGR00186 4 LYGKNAVLEALLNQ----QRVFILKGLESKRLKKLIQLAKKQGINIQLVDRQKLDQLTKGGNHQGIAAKVKPILYKDLND 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 81 LMALLADLtEAPFLLILDGVQDPHNLGACLRTAEAAGVHAVIAPKDRAATLTPTAIKISSGAAERVPFVQVTNLARVLKD 160
Cdd:TIGR00186 80 LYKTAKSK-KQPFLLILDEITDPHNLGAILRTAEAFGVDGVILPKRRSAPLNSTVVKTSSGAVEYVPLARVTNLSRTITK 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 386271147 161 LQQHGIWLVGTSGEADKNLYQADLTGPLGIVLGAEGKGIRRLTREHCDDVVLIPMQGQAESLNVSVAAGVCLFEATRQR 239
Cdd:TIGR00186 159 LKESGFWTVGTDLDAQDTLYQVKLTKPLALVVGNEGEGVSRLIKENCDFLIKIPMAGKVDSLNVSVAAGILLFEIKRQR 237
|
|
| SpoU-like_RlmB |
cd18103 |
SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the ... |
93-235 |
1.09e-85 |
|
SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the methylation of guanosine 2251, a modification conserved in the peptidyltransferase domain of 23S rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349976 Cd Length: 143 Bit Score: 250.76 E-value: 1.09e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 93 FLLILDGVQDPHNLGACLRTAEAAGVHAVIAPKDRAATLTPTAIKISSGAAERVPFVQVTNLARVLKDLQQHGIWLVGTS 172
Cdd:cd18103 1 LLLILDGITDPHNLGAIIRSAEAFGVDGVIIPKRRSAPLTPTVAKASAGALEHLPIARVTNLARALEELKEAGFWIYGAD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 386271147 173 GEADKNLYQADLTGPLGIVLGAEGKGIRRLTREHCDDVVLIPMQGQAESLNVSVAAGVCLFEA 235
Cdd:cd18103 81 GEAEKSLYDVDLTGPLALVLGSEGKGLRRLVLKNCDFLVKIPMAGKVDSLNVSVAAGIILYEI 143
|
|
| SpoU-like_rRNA-MTase |
cd18095 |
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
93-235 |
1.69e-61 |
|
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349968 Cd Length: 143 Bit Score: 189.56 E-value: 1.69e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 93 FLLILDGVQDPHNLGACLRTAEAAGVHAVIAPKDRAATLTPTAIKISSGAAERVPFVQVTNLARVLKDLQQHGIWLVGTS 172
Cdd:cd18095 1 LVLVLDGVQDPGNLGTIIRTAAAFGVDGVILSKGTVDPYNPKVVRASMGALFRLPIIRVDDLEELLEELKEAGYKVVAAD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 386271147 173 GEADKNLYQADLTGPLGIVLGAEGKGIRRLTREHCDDVVLIPMQGQAESLNVSVAAGVCLFEA 235
Cdd:cd18095 81 LDGGSSLYDLDLPKPVALVLGNEGNGLSDELLELCDKRVTIPMSGGVESLNVAVAAAILLYEL 143
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
92-233 |
3.12e-55 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 173.49 E-value: 3.12e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 92 PFLLILDGVQDPHNLGACLRTAEAAGVHAVIAPKDRAATL-TPTAIKISSGAAERVPFVQVTNLARVLKDLQQHGIWLVG 170
Cdd:pfam00588 1 PLVVVLDNIQDPGNLGAIIRTAAAFGADGLILVEPRSADPyNPKAIRASAGALFHLPLVVVDNLEEALKDLKEAGYAVVA 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 386271147 171 TSGEAdKNLYQADLTGPLGIVLGAEGKGIRRLTREHCDDVVLIPMQGQAESLNVSVAAGVCLF 233
Cdd:pfam00588 81 TSLGG-KSLYEIDFPKKVALVFGNEGTGLSNEVLELCDRLVRIPMSGDVESLNVAVAAAIALY 142
|
|
| SpoU-like_RNA-MTase |
cd18104 |
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
93-239 |
4.09e-45 |
|
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349977 Cd Length: 146 Bit Score: 147.73 E-value: 4.09e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 93 FLLILDGVQDPHNLGACLRTAEAAGVHAVIAPKDRAATLTPTAIKISSGAAERVPFVQVTNlARVLKDLQQHGIWLVGTS 172
Cdd:cd18104 1 LILVLEGLEKPGNLGAILRSADAAGADAVILCDPKTDLFNPNVIRASLGAVFTLPVAEASS-EETLAWLKENKIRILATT 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 386271147 173 GEADKNLYQADLTGPLGIVLGAEGKGIRRLTREHCDDVVLIPMQGQAESLNVSVAAGVCLFEATRQR 239
Cdd:cd18104 80 PKAEKLYYEADLRGPIAIVVGSESEGLSEFWLKAADERVRIPMAGQADSLNVSVAAAILLYEALRQR 146
|
|
| SpoU-like_MRM1 |
cd18105 |
SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose ... |
93-232 |
6.00e-44 |
|
SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose residues G1145 to GmG residue of the mitochondrial 16S rRNA. MRM1 is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349978 Cd Length: 158 Bit Score: 145.35 E-value: 6.00e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 93 FLLILDGVQDPHNLGACLRTAEAAGVHAVIAPKDRAATLTPTAIKISSGAAERVPFVQVTNLARVLKDLQQHGiW-LVGT 171
Cdd:cd18105 1 LWLLLDEITDPQNLGAILRSAYFLGVDGVVVSSKNSAPLSPVVSKASAGALELMPIYSVDNLASFLKSSKENG-WkVVGT 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 386271147 172 SGEADKN----------LYQADLTGPLGIVLGAEGKGIRRLTREHCDDVVLIPMQGQAE-----SLNVSVAAGVCL 232
Cdd:cd18105 80 SAPPSASsdkktipaneLSELLLEKPTILVLGNEGRGLRTNIKNLCDYLVSIPGGRSAEnpgvdSLNVSVAAGILL 155
|
|
| SpoU-like_family |
cd18082 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
95-235 |
1.42e-39 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349955 Cd Length: 145 Bit Score: 133.51 E-value: 1.42e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 95 LILDGVQDPHNLGACLRTAEAAGVHAVIAPKDRAATLTPTAIKISSGAAERVPFVQVTNLARVLKDLQQHGIWLVGTS-G 173
Cdd:cd18082 2 LVLDNIRSPGNIGSIFRTADAFGVEKIYLVGPTADIFDPKAKRTSRGTHFSVPYERVDNFEEYLKSLKEEGYPLIGLElT 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 386271147 174 EADKNLYQADL--TGPLGIVLGAEGKGIRRLTREHCDDVVLIPMQGQAESLNVSVAAGVCLFEA 235
Cdd:cd18082 82 DGSIPLSEFKFkkPKKIALIFGNERSGLSPELLALCDYTVHIPMSGKNSSLNVSVATGIALYEF 145
|
|
| SpoU-like_TrmH |
cd18092 |
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group ... |
93-239 |
7.86e-37 |
|
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the ribose of the universally conserved guanosine 18 (G18) position in tRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349965 Cd Length: 162 Bit Score: 127.20 E-value: 7.86e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 93 FLLILDGVQDPHNLGACLRTAEAAGVHAV--IAPKDRAATLTptaiKISSGAAERVPFVQVTNLARVLKDLQQHGIWLVG 170
Cdd:cd18092 17 LTVVLENVHDPHNASAVLRTCDAFGVQDVhvIEPKNKFKKNR----GVAMGADKWLDVHRHDSTEECLAALKEQGYRIVA 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 171 TS-GEADKNLYQADLTGPLGIVLGAEGKGIRRLTREHCDDVVLIPMQGQAESLNVSVAAGVCLFEATRQR 239
Cdd:cd18092 93 TSlSPDAVPLDELDYTRPTALVFGNEKDGVSEEALAAADERVYIPMYGFVESLNVSVAAAIILYELQRQR 162
|
|
| SpoU-like_RNA-MTase |
cd18109 |
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
93-234 |
3.45e-27 |
|
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349982 Cd Length: 141 Bit Score: 101.46 E-value: 3.45e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 93 FLLILDGVQDPHNLGACLRTAEAAGVHAVIAPKDRAATLTPTAIKISSGAAERVPFVQvTNLARVLKDLQQHGIwLVGTS 172
Cdd:cd18109 1 LTLALDGIQDPGNLGTIIRTADWFGIRQIICSPDTVDPYNPKVVQASMGSIFRVQIHY-TDLPALLAELKKAFP-VYGAD 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 386271147 173 GEAdKNLYQADLTGPLGIVLGAEGKGIRRLTREHCDDVVLIPMQGQ-AESLNVSVAAGVCLFE 234
Cdd:cd18109 79 LDG-ENLYEFTLPEKGILVMGNEGHGISPEVLKLLTHRLTIPRYGKgAESLNVAVATAILLSE 140
|
|
| SpoU-like |
cd18097 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
95-235 |
8.19e-27 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349970 Cd Length: 144 Bit Score: 100.72 E-value: 8.19e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 95 LILDGVQDPHNLGACLRTAEAAGVHAVIAPKDRAATLTPTAIKISSGAAERVPFVQVTNLARVLKDLQQHGIWLVGTSGE 174
Cdd:cd18097 3 VVLDNLRSAHNVGSIFRTADAAGVEKIYLCGYTPTPPHPKVAKTALGAEESVPWEHFEDTLEAVRALKARGYTIIALETT 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 386271147 175 AD-KNLYQADLTGPLGIVLGAEGKGIRRLTREHCDDVVLIPMQGQAESLNVSVAAGVCLFEA 235
Cdd:cd18097 83 ENsVPLHEARLPRPLALVLGNEVRGVSPEVLALCDAVVEIPMFGRKNSLNVAVAAAVALYEL 144
|
|
| SpoU-like_AviRb |
cd18107 |
SAM-dependent rRNA methylase related to AviRb; AviRb from Streptomyces viridochromogenes ... |
93-235 |
1.11e-26 |
|
SAM-dependent rRNA methylase related to AviRb; AviRb from Streptomyces viridochromogenes methylates the 2'-O atom of U2479 of the 23S ribosomal RNA. AviRb is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349980 Cd Length: 148 Bit Score: 100.54 E-value: 1.11e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 93 FLLILDGVQDPHNLGACLRTAEAAGVHAVIAPKDRAATLTPTAIKISSGAAERVPFVQVTNLARVLKDLQQ-----HGIW 167
Cdd:cd18107 1 LVVLFDRPTSPGNLGTIIRSADALGAHGLVVTGHAADVYDPKTIRASTGSLFSLPIVRVPSNRELEDWVEArkargTPLQ 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 386271147 168 LVGTSGEADKNLYQADLTGPLGIVLGAEGKGIRRLTREHCDDVVLIPMQGQAESLNVSVAAGVCLFEA 235
Cdd:cd18107 81 LVGTDEHGDHQIADHDFTRPTLLLIGNETAGLSAAWRELCDETVSIPMAGSASSLNAACAASIFLYEA 148
|
|
| PRK10864 |
PRK10864 |
putative methyltransferase; Provisional |
85-238 |
4.08e-25 |
|
putative methyltransferase; Provisional
Pssm-ID: 236779 [Multi-domain] Cd Length: 346 Bit Score: 101.01 E-value: 4.08e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 85 LADLTEAPFLLILDGVQDPHNLGACLRTAEAAGVHAVIAPkDRAATLTPTAIKISSGAAERVPFVQVTNLARVLKDLQQH 164
Cdd:PRK10864 191 LAQAGAQDCVLALEDVGNPHNLGGIMRSCAHFGVKGVVVQ-DAALLESGAAIRTAEGGAEHVQPITGDSFVDVLDDFRQA 269
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 386271147 165 GIWLVGTSGEADKNLYQADLTGPLGIVLGAEGKGIRRLTREHCDDVVLIPMQGQAESLNVSVAAGVCLFEATRQ 238
Cdd:PRK10864 270 GYTIVTTSSHKGTPLFKASLPAKMVLVLGQEYDGLSDAARQQGDLSVSIDGTGNVESLNVSVATGVLLAEWWRQ 343
|
|
| PRK11081 |
PRK11081 |
tRNA guanosine-2'-O-methyltransferase; Provisional |
87-239 |
6.32e-22 |
|
tRNA guanosine-2'-O-methyltransferase; Provisional
Pssm-ID: 236837 [Multi-domain] Cd Length: 229 Bit Score: 90.05 E-value: 6.32e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 87 DLTeapflLILDGVQDPHNLGACLRTAEAAGVHAVIA--PKDRAATLTPTAikisSGAAERVPFVQVTNLARVLKDLQQH 164
Cdd:PRK11081 19 DLT-----VCMEQVHKPHNVSAIIRTADAVGVHEVHAvwPGSRMRTMGSTA----AGSNSWVQVKTHRTIGDAVAHLKGQ 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 386271147 165 GIWLVGTSGEAD-KNLYQADLTGPLGIVLGAEGKGIRRLTREHCDDVVLIPMQGQAESLNVSVAAGVCLFEATRQR 239
Cdd:PRK11081 90 GMQILATHLSDTaVDFREIDYTRPTCILMGQEKTGISQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165
|
|
| SpoU-like |
cd18096 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
93-234 |
2.00e-19 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349969 Cd Length: 140 Bit Score: 81.11 E-value: 2.00e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 93 FLLILDGVQDPHNLGACLRTAEAAGVHAVIAPKDRAATLTPtaikiSSGAAERVPFVQVTNLARVLKDLQQHGIWLVGT- 171
Cdd:cd18096 1 LYLVLHNVAKRHNIGTIVRSANAFGVKEVHLVGRRKFNPFG-----AMGTDRHVKFRHFDTLAEAKEYLKERGIRLVGVe 75
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 386271147 172 SGEADKNLYQADLTGPLGIVLGAEGKGIRRLTREHCDDVVLIPMQGQA-ESLNVSVAAGVCLFE 234
Cdd:cd18096 76 IVPGAEPIETHPFPGDTAFVLGNEGTGLSDEQLAICDGFVYIPQYGSGtASLNVSVAASIVLHH 139
|
|
| SpoU_sub_bind |
pfam08032 |
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose ... |
2-74 |
5.69e-18 |
|
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose methyltransferase substrate binding domain.
Pssm-ID: 429793 [Multi-domain] Cd Length: 74 Bit Score: 75.35 E-value: 5.69e-18
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 386271147 2 YGFHAVQAALEAPVtRVSEIWLADERHDPRVEAILTIAASHSVPVQRVSRKALEQLVPDLQHQGCVARVKPLE 74
Cdd:pfam08032 3 YGRHAVLEALKSGP-EIKKLYLTEGRRDPRLKELLKLAKERGIKVEEVDRKKLDKLSGTANHQGVVAEVKPYE 74
|
|
| SpoU-like_RNMTL1 |
cd18106 |
SAM-dependent rRNA methylase related to RNMTL1; RNMTL1 (also known as HC90, MRM3 and RMTL1) ... |
95-235 |
2.80e-16 |
|
SAM-dependent rRNA methylase related to RNMTL1; RNMTL1 (also known as HC90, MRM3 and RMTL1) catalyzes the methylation of 2'-O-ribose residues G1370 to GmG residue of the mitochondrial 16S rRNA. RNMTL1 is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349979 Cd Length: 148 Bit Score: 73.05 E-value: 2.80e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 95 LILDGVQDPHNLGACLRTAEAAGVHAVIAPKDRAATLTPTAIKISSGAAERVPFVQVTNLARVLKDLQQHGIWLVGTSGE 174
Cdd:cd18106 3 VICDNIRDPGNLGSILRSAAAAGCSKVLLTKGCVDPWEPKVLRAGAGAHFRLPIYGNLSWDDIPNYLPDDSKVFLADNNL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 386271147 175 ADKNLYQADLT-GPLGIVLGAEGKGI----RRLTREHCDDVVLIPMQGQAESLNVSVAAGVCLFEA 235
Cdd:cd18106 83 PVQPYDSIDYCsGPIVLVIGGETHGVspeaYKLAHSTGGSRVHIPLANGVDSLNSAVAASILLFEM 148
|
|
| SpoU_sub_bind |
smart00967 |
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose ... |
2-72 |
9.68e-16 |
|
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose methyltransferase substrate binding domain.
Pssm-ID: 214943 [Multi-domain] Cd Length: 70 Bit Score: 69.49 E-value: 9.68e-16
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 386271147 2 YGFHAVQAALEAPVtRVSEIWLADERHDpRVEAILTIAASHSVPVQRVSRKALEQLVPDLQHQGCVARVKP 72
Cdd:smart00967 2 EGRHAVEEALKSGR-RIKELYLTEGRAE-RLKELLKLAKERGIKVIEVSKKELDKLSGTANHQGVVAVVKP 70
|
|
| SpoU-like_TRM3-like |
cd18091 |
SAM-dependent tRNA methylase related to TRM3; Yeast tRNA (guanosine(18)-2'-O) ... |
100-234 |
1.51e-15 |
|
SAM-dependent tRNA methylase related to TRM3; Yeast tRNA (guanosine(18)-2'-O)-methyltransferase TRM3 catalyzes the formation of 2'-O-methylguanosine at position 18 (Gm18) in various tRNAs. TRM3 is similar to C-terminal domain of TAR (HIV-1) RNA binding protein 1 (TARBP1), a protein binding to TAR, which functions as a RNA regulatory signal by forming a stable stem-loop structure to which transactivator protein Tat binds. The role of TARBP1 is believed to be to disengage RNA polymerase II from TAR during transcriptional elongation. TRM3 and the C-terminal methyltransferase domain of TARBP1 are members of the SPOUT methyltransferase superfamily.
Pssm-ID: 349964 Cd Length: 145 Bit Score: 71.02 E-value: 1.51e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 100 VQDPHNLGACLRTAEAAGVHAVIAPkDRAATLTPTAIKISSGAAERVPFVQVT--NLARVLKDLQQHGIWLVGtsgeadk 177
Cdd:cd18091 8 IDKPPNLGGLCRTCEIFGVSKLVLP-NLAVVEDKQFKALSVSAEKWLPIEEVKpeDLLPYLKEKKQEGYTIVG------- 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 386271147 178 nLYQADLTGPLG---------IVLGAEGKGIRRLTREHCDDVVLIPMQGQAESLNVSVAAGVCLFE 234
Cdd:cd18091 80 -LEQTANSVSLHdfqfpkktvLVLGNEKEGIPAELLSLLDVCVEIPQLGVIRSLNVHVSGAIAIYE 144
|
|
| SpoU-like_TrmL |
cd18094 |
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL ... |
144-238 |
5.41e-12 |
|
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349967 Cd Length: 145 Bit Score: 61.70 E-value: 5.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 144 ERVPFVQVTNLARVLKDLQQHGIWLVGTSGEadKNLYQADLTGPLGIVLGAEGKGIRRLTREHCDDVVL-IPMQGQAESL 222
Cdd:cd18094 51 DHVDLTVHDSWEAFLEALPPGRLFLFTTKGT--KPYTDFDFKPGDYLVFGRESTGLPEEILDAFPDRRLrIPMRPKVRSL 128
|
90
....*....|....*.
gi 386271147 223 NVSVAAGVCLFEATRQ 238
Cdd:cd18094 129 NLSNSVAIVLYEALRQ 144
|
|
| SpoU-like_TrmJ |
cd18093 |
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl ... |
96-234 |
1.28e-11 |
|
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 32 in both tRNASer1 and tRNAGln2. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349966 Cd Length: 153 Bit Score: 60.59 E-value: 1.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 96 ILDGVQDPHNLGACLRTAEAAGVHA--VIAPKDraATLTPTAIKISSGAAE-----RVpfvqVTNLARVLKDLQqhgiWL 168
Cdd:cd18093 4 VLVEPQHPGNIGAVARAMKNFGLSDlrLVNPRC--DDPEEAARALASGAEDvlenaKV----YDTLEEALADCD----LV 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 169 VGTSG-------------EADKNLYQADLTGPLGIVLGAEGKGirrLTRE---HCDDVVLIPMQGQAESLNVSVAAGVCL 232
Cdd:cd18093 74 VATTArprglrrplltprELAELLKEHAAGGKVALVFGREDSG---LTNEelaLCDLLVTIPTNPEYPSLNLAQAVAIVL 150
|
..
gi 386271147 233 FE 234
Cdd:cd18093 151 YE 152
|
|
| SpoU-like_NHR |
cd18108 |
Nosiheptide-resistance methyltransferase (NHR); Nosiheptide-resistance methyltransferase (NHR) ... |
94-234 |
2.15e-11 |
|
Nosiheptide-resistance methyltransferase (NHR); Nosiheptide-resistance methyltransferase (NHR) confers resistance to the thiazole antibiotic nosiheptide via catalyzing 2'O-methylation of 23S rRNA at the nucleotide A1067. NHR is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349981 Cd Length: 144 Bit Score: 59.80 E-value: 2.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 94 LLILDGVQDPHNLGACLRTAEAAGVHAVI-APKDRAATLTPTAIKISSGAAERVPFVqVTNLARVLKDLQQHGIWLVgtS 172
Cdd:cd18108 2 VVVLDGVRIVGNIGAIVRTSLALGAAGIVlVDSDLATVADRRLLRASRGYVFSLPVV-LADREEAVAFLRDNDIPLM--T 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 386271147 173 GEADKNLYQADLTG---PLGIVLGAEGKGIRRLTREHCDDVVLIPMQGQAESLNVSVAAGVCLFE 234
Cdd:cd18108 79 LDADGDVPVKELGDrpdRLALVFGSEKGGPSGLFEEAAAGTVSIPMSSSTESLNVSVSAGIALHE 143
|
|
| TrmL |
COG0219 |
tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ... |
144-240 |
4.62e-11 |
|
tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ribosomal structure and biogenesis]; tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 439989 Cd Length: 153 Bit Score: 59.28 E-value: 4.62e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 144 ERVPFVQVTNLARVLKDLQQHGIWLVGTSGEadKNLYQADLTGPLGIVLGAEGKGI-RRLTREHCDDVVLIPMQGQAESL 222
Cdd:COG0219 53 ELVDLTVHDSWEAFLEALPGGRLFLFTTKGT--KPYTDVDYQPGDVLLFGRETAGLpEEVLAAPADQRLRIPMRPGVRSL 130
|
90
....*....|....*...
gi 386271147 223 NVSVAAGVCLFEATRQRG 240
Cdd:COG0219 131 NLSNAVAIVLYEALRQLG 148
|
|
| SpoU-like |
cd18098 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
97-233 |
1.87e-05 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349971 Cd Length: 138 Bit Score: 43.02 E-value: 1.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386271147 97 LDGVQDPHNLGACLRTA---EAAGVHAVIAPKDRAATLTPTaikisSGAAERVPFVQVTNLARVLKDLqQHGIWLVGTS- 172
Cdd:cd18098 5 IENPKTPKNVGTLWRAAgclGASFVFTIGARYKRRKQSTDT-----SKAWRHIPLFHYDDLEDLAEPL-PFGAVLVAVEl 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 386271147 173 GEADKNLyqADLTGPLGIV--LGAEGKGIRRLTREHCDDVVLIPMQGqaeSLNVSVAAGVCLF 233
Cdd:cd18098 79 TEGATPL--PDFKHPDRAVylLGPEDGGLPQEVLARCHHVVYLPTRG---SLNVAVAGSIVLY 136
|
|
| |
