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Conserved domains on  [gi|388563464|gb|AFK72605|]
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hypothetical protein YSA_10769 [Pseudomonas putida ND6]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6555 pfam20192
Family of unknown function (DUF6555); This family of proteins is functionally uncharacterized. ...
 63-136 4.33e-48

Family of unknown function (DUF6555); This family of proteins is functionally uncharacterized. This family of proteins is found in Proteobacteria. Proteins in this family are typically between 76 and 94 amino acids in length.


:

Pssm-ID: 466343  Cd Length: 74  Bit Score: 149.79  E-value: 4.33e-48
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 388563464   63 MPSPQLYIIDYKLHDQPRSFIIRLERLDNAEAWHWASCDAGIGIIPKFGREKIRKVSRPMAERYGITAVSWRIS 136
Cdd:pfam20192   1 MAGPQLYIIDYLLHGAPKSFIIRAEQMDNAEAWHWASCDAGIGRIPKFGREKVPKVSKPHAERYGITDVSWRRA 74
 
Name Accession Description Interval E-value
DUF6555 pfam20192
Family of unknown function (DUF6555); This family of proteins is functionally uncharacterized. ...
 63-136 4.33e-48

Family of unknown function (DUF6555); This family of proteins is functionally uncharacterized. This family of proteins is found in Proteobacteria. Proteins in this family are typically between 76 and 94 amino acids in length.


Pssm-ID: 466343  Cd Length: 74  Bit Score: 149.79  E-value: 4.33e-48
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 388563464   63 MPSPQLYIIDYKLHDQPRSFIIRLERLDNAEAWHWASCDAGIGIIPKFGREKIRKVSRPMAERYGITAVSWRIS 136
Cdd:pfam20192   1 MAGPQLYIIDYLLHGAPKSFIIRAEQMDNAEAWHWASCDAGIGRIPKFGREKVPKVSKPHAERYGITDVSWRRA 74
 
Name Accession Description Interval E-value
DUF6555 pfam20192
Family of unknown function (DUF6555); This family of proteins is functionally uncharacterized. ...
 63-136 4.33e-48

Family of unknown function (DUF6555); This family of proteins is functionally uncharacterized. This family of proteins is found in Proteobacteria. Proteins in this family are typically between 76 and 94 amino acids in length.


Pssm-ID: 466343  Cd Length: 74  Bit Score: 149.79  E-value: 4.33e-48
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 388563464   63 MPSPQLYIIDYKLHDQPRSFIIRLERLDNAEAWHWASCDAGIGIIPKFGREKIRKVSRPMAERYGITAVSWRIS 136
Cdd:pfam20192   1 MAGPQLYIIDYLLHGAPKSFIIRAEQMDNAEAWHWASCDAGIGRIPKFGREKVPKVSKPHAERYGITDVSWRRA 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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