|
Name |
Accession |
Description |
Interval |
E-value |
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
12-539 |
8.59e-117 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 354.15 E-value: 8.59e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 12 RYLSVFLVMLIGIYLLV-------------FFTGDKHTAPKLGIDLQGGTRVTLTARTPDG------------------- 59
Cdd:PRK05812 2 KYLLILLVLLIGLLYALpnlrgalapatpeWLPALGAKPMKLGLDLRGGVHFLLEVDMDDAlkkrlesladdlrsllrek 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 60 -----------------------------------SAPSREALAQAQQIISARVNGLGVSGSEVVVDG-DNLVITVPG-N 102
Cdd:PRK05812 82 kiryggveitfrdaedrdkaiallrklsslteaelKEITEEALEQAIEIIRNRVNELGVAEPVIQRQGaDRIVVELPGvQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 103 DGSEARN-LGQTARLYIRPVlnsmpaqpaaeepqpapsaepqppgqpaapppaqsgapaspqpgaqprpypqdpapspnp 181
Cdd:PRK05812 162 DTARAKEiLGKTATLEFRLV------------------------------------------------------------ 181
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 182 tspaspppappaeapatdprkdlaeriaqekklrqstnqymqmvalqfqatrcesddilagnddpklplvtcstdhktay 261
Cdd:PRK05812 --------------------------------------------------------------------------------
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 262 llaPSIISGDQIQNATSGMDQRGiGYVVDLQFKGPAANIWADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGG 341
Cdd:PRK05812 182 ---PVILTGDDITDASASFDQQG-QPVVNITLDSEGAKKFADITKANIGKRMAIVLDGEVISAPVIQSAITGGSAQITGN 257
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 342 dppFTAATARQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGS 421
Cdd:PRK05812 258 ---FTAEEARDLALLLRAGALPAPLEIVEERTIGPSLGADSIRAGLIAGLIGLALVLLFMILYYRLFGLIANIALVANLV 334
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 422 MVFAILVLLGryinYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAA 501
Cdd:PRK05812 335 LILAVLSLLG----ATLTLPGIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAI 410
|
570 580 590
....*....|....*....|....*....|....*...
gi 395139398 502 VLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYL 539
Cdd:PRK05812 411 ILYALGTGPVKGFAVTLGIGILTSMFTAITVTRALVNL 448
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
40-537 |
1.53e-114 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 346.20 E-value: 1.53e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 40 LGIDLQGGTRVTLTARTPDG----------SAPSREALAQAQQIISARVNGLGVSGSEVVVDG-DNLVITVPG-NDGSEA 107
Cdd:TIGR01129 1 LGLDLRGGARVLLEVDMSTAvvlklseaevNAIRKDALEQVITILRNRVNALGVSEPVVQRQGkDRIVVELPGvTDTSRA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 108 RN-LGQTARLYIRPVLNSMPAQPAAEEPQPapsaepqppgqpaapppaqsgapaspqpgaqprpypqdpapspnptspas 186
Cdd:TIGR01129 81 KDiLGGTATLEFRLVDDESTSPDDALAGNV-------------------------------------------------- 110
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 187 pppappaeapatdprkdlaeriaqekklrqstnqymqmvalqfqatrcesddilagnDDPKLPLVTCSTDHKtAYLLAPS 266
Cdd:TIGR01129 111 ---------------------------------------------------------PAGSELLDSRSGDPK-YYLLKKS 132
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 267 -IISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGgdpPF 345
Cdd:TIGR01129 133 pVLTGDHITDATSSVDQRSGQPVVSFSLDSEGARIFGDFTQANIGKRLAIVLDNKVVSAPTIQEAITGGSGQITG---NF 209
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 346 TAATARQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASgsmVFA 425
Cdd:TIGR01129 210 TAEEANDLALVLRSGALPAPLQILEERTIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVIN---IVL 286
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 426 ILVLLGRYiNYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYF 505
Cdd:TIGR01129 287 ILAILSAF-GATLTLPGIAGLILTIGMAVDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYV 365
|
490 500 510
....*....|....*....|....*....|..
gi 395139398 506 LAIGQVKGFAFTLGLTTILDLVVVFLVTWPLV 537
Cdd:TIGR01129 366 FGTGPVKGFAVTLAIGIIASLFTALVFTRLLL 397
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
12-548 |
1.76e-107 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 329.38 E-value: 1.76e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 12 RYLSVFLVMLIGIYLLvfftGDKHTAPKLGIDLQGGTRVTLTARTPDG--------SAPSREALAQAQQIISARVNGLGV 83
Cdd:COG0342 9 RLLLLLLVVALSLVAP----NGPAKPIKLGLDLQGGVHLLLEVDTDAAldedgdgiREVTEEALDQAIEILRNRVNELGV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 84 SGSEVVVDG-DNLVITVPG-NDGSEARN-LGQTARLYIRPVLNSMPAQPAAeepqpapsaepqppgqpaapppaqsgapa 160
Cdd:COG0342 85 SEPVIQRQGdDRIVVELPGvQDPAEAKElLGKTAKLEFRLVDDSADAQAAV----------------------------- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 161 spqpgaqprpypqdpapspnptspaspppappaeapatdprkdlaeriaqekklrqstnqymqmvalqfqatrcesddil 240
Cdd:COG0342 --------------------------------------------------------------------------------
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 241 agnddPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIGTQTAFTLDSQ 320
Cdd:COG0342 136 -----PAGSELLPCRDGQPYLLLGPVVLTGDDLTDASAGFDQQTGQPVVSFTLDSEGAKKFADATRENVGKPLAIVLDGE 210
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 321 VVSAPQIQEAIPGGRTQISGGdppFTAATARQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVY 400
Cdd:COG0342 211 VISAPVIQEPITGGSAQITGS---FTVEEAQDLALLLRAGALPAPLEIVEERTVGPTLGADSIEKGLIAGLIGLLLVALF 287
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 401 SLLYYRVLGLLTALSLVASGSMVFAILVLLGryinYTLDlagiagliigigTTADSFVVFFERIKDEIREGRSFRSAVPR 480
Cdd:COG0342 288 MLLYYRLPGLVANIALALNVVLLLGVLSLLG----ATLTlpgiagiiltigMAVDANVLIFERIREELRAGRSLRAAIEA 363
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 395139398 481 GWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAK 548
Cdd:COG0342 364 GFKRAFSTILDANVTTLIAAVVLFVLGTGPVKGFAVTLILGILISMFTAVPVTRPLLNLLLGRRRLKK 431
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
346-551 |
1.85e-05 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 47.85 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 346 TAATARQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFA 425
Cdd:NF037998 407 TETIARTIEALINQTTSGFTFKVNGISEFNPVVTLLMLIASIIFLLILAIAIMIYLLFAYRLLGLFAIIIALTSISLTLY 486
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 426 ILVLLGryinYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEI-REGRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLY 504
Cdd:NF037998 487 SPTWFG----LAIGPESITAIFIAIGLVLESCSLLFEAFKKHLyKNKRSIEESFKIANKETIGIIVDALVVLLIPNLSLF 562
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 395139398 505 FLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKPAY 551
Cdd:NF037998 563 WIGSNSIKSFATILLVGVIISLVLVIIVARLMIWLTIKLQWFKKYPW 609
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
12-539 |
8.59e-117 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 354.15 E-value: 8.59e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 12 RYLSVFLVMLIGIYLLV-------------FFTGDKHTAPKLGIDLQGGTRVTLTARTPDG------------------- 59
Cdd:PRK05812 2 KYLLILLVLLIGLLYALpnlrgalapatpeWLPALGAKPMKLGLDLRGGVHFLLEVDMDDAlkkrlesladdlrsllrek 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 60 -----------------------------------SAPSREALAQAQQIISARVNGLGVSGSEVVVDG-DNLVITVPG-N 102
Cdd:PRK05812 82 kiryggveitfrdaedrdkaiallrklsslteaelKEITEEALEQAIEIIRNRVNELGVAEPVIQRQGaDRIVVELPGvQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 103 DGSEARN-LGQTARLYIRPVlnsmpaqpaaeepqpapsaepqppgqpaapppaqsgapaspqpgaqprpypqdpapspnp 181
Cdd:PRK05812 162 DTARAKEiLGKTATLEFRLV------------------------------------------------------------ 181
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 182 tspaspppappaeapatdprkdlaeriaqekklrqstnqymqmvalqfqatrcesddilagnddpklplvtcstdhktay 261
Cdd:PRK05812 --------------------------------------------------------------------------------
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 262 llaPSIISGDQIQNATSGMDQRGiGYVVDLQFKGPAANIWADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGG 341
Cdd:PRK05812 182 ---PVILTGDDITDASASFDQQG-QPVVNITLDSEGAKKFADITKANIGKRMAIVLDGEVISAPVIQSAITGGSAQITGN 257
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 342 dppFTAATARQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGS 421
Cdd:PRK05812 258 ---FTAEEARDLALLLRAGALPAPLEIVEERTIGPSLGADSIRAGLIAGLIGLALVLLFMILYYRLFGLIANIALVANLV 334
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 422 MVFAILVLLGryinYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAA 501
Cdd:PRK05812 335 LILAVLSLLG----ATLTLPGIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAI 410
|
570 580 590
....*....|....*....|....*....|....*...
gi 395139398 502 VLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYL 539
Cdd:PRK05812 411 ILYALGTGPVKGFAVTLGIGILTSMFTAITVTRALVNL 448
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
40-537 |
1.53e-114 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 346.20 E-value: 1.53e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 40 LGIDLQGGTRVTLTARTPDG----------SAPSREALAQAQQIISARVNGLGVSGSEVVVDG-DNLVITVPG-NDGSEA 107
Cdd:TIGR01129 1 LGLDLRGGARVLLEVDMSTAvvlklseaevNAIRKDALEQVITILRNRVNALGVSEPVVQRQGkDRIVVELPGvTDTSRA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 108 RN-LGQTARLYIRPVLNSMPAQPAAEEPQPapsaepqppgqpaapppaqsgapaspqpgaqprpypqdpapspnptspas 186
Cdd:TIGR01129 81 KDiLGGTATLEFRLVDDESTSPDDALAGNV-------------------------------------------------- 110
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 187 pppappaeapatdprkdlaeriaqekklrqstnqymqmvalqfqatrcesddilagnDDPKLPLVTCSTDHKtAYLLAPS 266
Cdd:TIGR01129 111 ---------------------------------------------------------PAGSELLDSRSGDPK-YYLLKKS 132
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 267 -IISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGgdpPF 345
Cdd:TIGR01129 133 pVLTGDHITDATSSVDQRSGQPVVSFSLDSEGARIFGDFTQANIGKRLAIVLDNKVVSAPTIQEAITGGSGQITG---NF 209
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 346 TAATARQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASgsmVFA 425
Cdd:TIGR01129 210 TAEEANDLALVLRSGALPAPLQILEERTIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVIN---IVL 286
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 426 ILVLLGRYiNYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYF 505
Cdd:TIGR01129 287 ILAILSAF-GATLTLPGIAGLILTIGMAVDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYV 365
|
490 500 510
....*....|....*....|....*....|..
gi 395139398 506 LAIGQVKGFAFTLGLTTILDLVVVFLVTWPLV 537
Cdd:TIGR01129 366 FGTGPVKGFAVTLAIGIIASLFTALVFTRLLL 397
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
12-548 |
1.76e-107 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 329.38 E-value: 1.76e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 12 RYLSVFLVMLIGIYLLvfftGDKHTAPKLGIDLQGGTRVTLTARTPDG--------SAPSREALAQAQQIISARVNGLGV 83
Cdd:COG0342 9 RLLLLLLVVALSLVAP----NGPAKPIKLGLDLQGGVHLLLEVDTDAAldedgdgiREVTEEALDQAIEILRNRVNELGV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 84 SGSEVVVDG-DNLVITVPG-NDGSEARN-LGQTARLYIRPVLNSMPAQPAAeepqpapsaepqppgqpaapppaqsgapa 160
Cdd:COG0342 85 SEPVIQRQGdDRIVVELPGvQDPAEAKElLGKTAKLEFRLVDDSADAQAAV----------------------------- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 161 spqpgaqprpypqdpapspnptspaspppappaeapatdprkdlaeriaqekklrqstnqymqmvalqfqatrcesddil 240
Cdd:COG0342 --------------------------------------------------------------------------------
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 241 agnddPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIGTQTAFTLDSQ 320
Cdd:COG0342 136 -----PAGSELLPCRDGQPYLLLGPVVLTGDDLTDASAGFDQQTGQPVVSFTLDSEGAKKFADATRENVGKPLAIVLDGE 210
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 321 VVSAPQIQEAIPGGRTQISGGdppFTAATARQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVY 400
Cdd:COG0342 211 VISAPVIQEPITGGSAQITGS---FTVEEAQDLALLLRAGALPAPLEIVEERTVGPTLGADSIEKGLIAGLIGLLLVALF 287
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 401 SLLYYRVLGLLTALSLVASGSMVFAILVLLGryinYTLDlagiagliigigTTADSFVVFFERIKDEIREGRSFRSAVPR 480
Cdd:COG0342 288 MLLYYRLPGLVANIALALNVVLLLGVLSLLG----ATLTlpgiagiiltigMAVDANVLIFERIREELRAGRSLRAAIEA 363
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 395139398 481 GWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAK 548
Cdd:COG0342 364 GFKRAFSTILDANVTTLIAAVVLFVLGTGPVKGFAVTLILGILISMFTAVPVTRPLLNLLLGRRRLKK 431
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
9-542 |
1.11e-63 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 222.41 E-value: 1.11e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 9 HPARYLSVFLVM--LIGIYLLVFFTGDKHtaPKLGIDLQGGTRVTLTARTPD-GSAPSREALAQAQQIISARVNGLGVSG 85
Cdd:PRK13024 2 RNKRWVIFFLTLllLIGIYYASPKFVTKN--INLGLDLQGGFEVLLEVSPADkGKKADREALDSTVEVLRNRIDGLGVSE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 86 SEVVVDGDN-LVITVPG-NDGSEARN-LGQTARLYIRPVLNSMPAQPAAEEPQPAPSaepqppgqpaapppaqsgapasp 162
Cdd:PRK13024 80 PNIQREGNNrIRVELPGvQDPERARElLGSTAKLTFRDVTDPPPPGVGGPVVGPDEG----------------------- 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 163 qpgaqprpypqdpapspnptspaspppappaeapatdprKDLAEriaqekklrqstnqymqmvalqfqatrcesddilag 242
Cdd:PRK13024 137 ---------------------------------------KDTAV------------------------------------ 141
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 243 nddpklplvtcstdhktaylLAPSIISGDQIQNATSGMDQRGIG-YVVDLQFKGPAANIWADYTAAHIGTQT-----AFT 316
Cdd:PRK13024 142 --------------------LNPVLLSGDDLTDAGAKFDQDQTNrPSVSLKLKSEGAKKWAKVTEKNSKKGPpnnriAIV 201
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 317 LDSQVVSAPQIQEAIPGGRTQISGGdppFTAATARQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLL 396
Cdd:PRK13024 202 LDPKVISAPTVNQPINGGSVQISGN---FTVEEAKDLANLLNAGALPAPLKIIESRSVGPTLGQDAIDAGIIAGIIGFAL 278
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 397 VLVYSLLYYRVLGLLTALSLVASGSMVFAILVLLGRyiNYTLdlagiagliigiGTTA----------DSFVVFFERIKD 466
Cdd:PRK13024 279 IFLFMLVYYGLPGLIANIALLLYIFLTLGALSSLGA--VLTL------------PGIAglvlgigmavDANVLIFERIKE 344
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 395139398 467 EIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVV-VFLVTWPLVYLASK 542
Cdd:PRK13024 345 ELRKGKSLKKAFKKGFKNAFSTILDSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTaVFLTRLLLELLVKR 421
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
66-524 |
1.72e-41 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 160.27 E-value: 1.72e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 66 ALAQAQQIISARVNGLGVSGSEVVVDG-DNLVITVPG-NDGSEARN-LGQTARLYIRPVLNSMPAQPAAEEPQPAPSaep 142
Cdd:PRK14726 162 ALTQSIEVVRRRVAELGTTEPLIRRQGdDRIVVQVPGlVDPQRLKNlLNQPAKLSFRLVDSSMPAQEALNGRPPATS--- 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 143 qppgqpaapppaqsgapaspqpgaqprpypqdpapspnptspaspppappaeapatdprkdlaeriaqekklrqstnqym 222
Cdd:PRK14726 --------------------------------------------------------------------------------
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 223 qmvalqfqatrcesdDILAGNDDPKLPlvtcstdhktaYLLA-PSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIW 301
Cdd:PRK14726 239 ---------------EVLYSLDDPPVP-----------YLVErRAFVSGENLVDAQPVFDPQTNEPVVTFRLDAEGTQRF 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 302 ADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGdppFTAATARQLANVLKYGSLPLSFEPSEAQTVSATLGLS 381
Cdd:PRK14726 293 AQATQQNVGKHFAIVLDGQVISAPVIDEAITGGEGRISGN---FSEQGANDLAVLLRAGALPATLTVVEERTVGPGLGAD 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 382 SLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVLLGRyinyTLDLAGIAGLIIGIGTTADSFVVFF 461
Cdd:PRK14726 370 SIAAGLVAGLIAAILVAALMIGFYGFLGVIAVIALIVNVVLIIAVLSLLGA----TLTLPGIAGIVLTIGMAVDSNVLIY 445
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 395139398 462 ERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLG---LTTIL 524
Cdd:PRK14726 446 ERIREEEKTGHSLIQALDRGFSRALATIVDANVTILIAAVILFFLGSGAVRGFAVTLAvgiLTTVF 511
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
293-530 |
7.92e-33 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 124.29 E-value: 7.92e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 293 FKGPAANIWADYtAAHIGTQTAFTLDSQVVSAPQIQeaipggrtqisggdppftaatarqlanvlkygslplsfepseaq 372
Cdd:TIGR00916 1 LDEEGAKIFADF-AANIGKPAIVLDNAKVISAPVVG-------------------------------------------- 35
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 373 TVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGsmVFAILVLLGRYInYTLDLAGIAGLIIGIGT 452
Cdd:TIGR00916 36 TVGPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHD--VILILGVLSLFG-ATLTLPGIAGLLTIIGY 112
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 453 TADSFVVFFERIKDEIR--EGRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVF 530
Cdd:TIGR00916 113 SVDDTVVIFDRIREELRkyKGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSSI 192
|
|
| secD |
PRK12933 |
protein translocase subunit SecD; |
256-520 |
2.89e-26 |
|
protein translocase subunit SecD;
Pssm-ID: 183831 [Multi-domain] Cd Length: 604 Bit Score: 113.24 E-value: 2.89e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 256 DHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVdLQFKGPAANIWADYTAAHIGTQTA-----FTLDSQ--------VV 322
Cdd:PRK12933 304 NGRPVYVARRPVLGGEHIVDARASLGEMGMAEVN-ISLDRAGGKKMSDFSRDNIGKPMAtsyseYSRDEQgktkqseeVI 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 323 SAPQIQEAIpGGRTQISGGDPPftaATARQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSL 402
Cdd:PRK12933 383 SVATIQSQL-GDRFRITGAGSY---QEAQQLALLLRAGSLTAPVTIVEERTIGPSLGAENIENGFAALALGMGITLLFMA 458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 403 LYYRVLGLLTALSLVASGSMVFAILVLLGryiNYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGW 482
Cdd:PRK12933 459 LWYRRLGWVANVALIANMVCLFGLLALIP---GAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAQAIDTGF 535
|
250 260 270
....*....|....*....|....*....|....*...
gi 395139398 483 ARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGL 520
Cdd:PRK12933 536 DSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGL 573
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
237-530 |
1.47e-20 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 95.84 E-value: 1.47e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 237 DDILAGNDDPKLPLVTCSTDHKTAYLLAPS-IISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIGTQTAF 315
Cdd:PRK13023 133 DDAIRGTPPADSEIVYSFDDPPVGYLLKKTpILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQGNENSFAI 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 316 TLDSQVVSAPQIQEAIPGGRTQISGGdppFTAATARQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLL 395
Cdd:PRK13023 213 VVDNQVVSAPTVSGPLDTSELQIEGA---FDLQAANNMAVVLRSGALPQAVTVLEERTIASALGEDYASAAVLAALLAAL 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 396 LVLVYSLLYYRVLGLLTALSLVASGSMVFAILVLLGRYINYTldlaGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFR 475
Cdd:PRK13023 290 VVGLFMVLSYGILGVIALVALVVNIIILTAVLSLIGASISLA----SIAGLVLTIGLAVDAHILIYERVREDRRKGYSVV 365
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 395139398 476 SAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFT--LGLTTILDLVVVF 530
Cdd:PRK13023 366 QAMESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHGFALTvaIGIGTTLFTTLTF 422
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
310-534 |
8.78e-13 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 71.43 E-value: 8.78e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 310 GTQTAFTLDSQVVSAPqIQEAIPGGRTQISGGdppFTAATARQLANVLKYGSLplSFEP---SEaQTVSATLGLSSLRAG 386
Cdd:PRK12911 839 GWRMAVVLDGYVVSDP-VLNVPLKDHASVSGK---FSHREVHRLATDLKSGAM--SFVPevlSE-EVISPELGKSQRTQG 911
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 387 MIAGAIGLLLVLVYSLLYYRVLGLltalslVASGSMVFAILVLLG--RYINYTLDLAGIAGLIIGIGTTADSFVVFFERI 464
Cdd:PRK12911 912 IISVCLGLAVLIVLMSVYYRFGGV------IASGAVLLNLLLIWAalQYLDAPLTLSGLAGIVLAMGMAVDANVLVFERI 985
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 395139398 465 KDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTL------GLTTILDLVVVFLVTW 534
Cdd:PRK12911 986 REEYLLSRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDTGPIKGFALTLiigifsSMFTALFMTKFFFMIW 1061
|
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
267-535 |
1.47e-08 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 57.19 E-value: 1.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 267 IISGDQIQN-ATSGMDQRGIGYVVDLQFKGPAANIWADytaahIGTQTAFT-----------LDSQVVSAPQIQE----A 330
Cdd:PRK08343 130 VLTGDDIESvGSPSQDPSGGAWGVPFTLSEDGAEKFAE-----VAKGKGATddpsghpldmyLDGELIYAAPLSPdlasG 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 331 IPGGRTQISGGDPPFTAAT---ARQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGaiglllvlvysllyyrv 407
Cdd:PRK08343 205 LASGPVVITVGSTGTTEEAkeeAKELYIHLRSGALPVKLDIEGSGSVSPSLGEQFKKGSLIAG----------------- 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 408 lglltALSLVASGSMVFA------------------ILVLLG--RYINYTLDLAGIAGLIIGIGTTADSFVVfferIKDE 467
Cdd:PRK08343 268 -----LLALLAVALVVFLryreprialpmvitslseVIIILGfaALIGWQLDLASIAGIIAVIGTGVDDLII----ITDE 338
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 395139398 468 I-REGRSFRSAVPRgwARARK--TIVSGNAVTFLAA-AVLYFLAIGQVKGFAFtlglTTILDLVVVFLVTWP 535
Cdd:PRK08343 339 VlHEGKVPSRKVFL--SRIKRafFIIFAAAATTIAAmSPLAVMGLGDLKGFAI----TTILGVLIGVLITRP 404
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
346-551 |
1.85e-05 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 47.85 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 346 TAATARQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFA 425
Cdd:NF037998 407 TETIARTIEALINQTTSGFTFKVNGISEFNPVVTLLMLIASIIFLLILAIAIMIYLLFAYRLLGLFAIIIALTSISLTLY 486
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 426 ILVLLGryinYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEI-REGRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLY 504
Cdd:NF037998 487 SPTWFG----LAIGPESITAIFIAIGLVLESCSLLFEAFKKHLyKNKRSIEESFKIANKETIGIIVDALVVLLIPNLSLF 562
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 395139398 505 FLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKPAY 551
Cdd:NF037998 563 WIGSNSIKSFATILLVGVIISLVLVIIVARLMIWLTIKLQWFKKYPW 609
|
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
16-119 |
2.06e-05 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 47.18 E-value: 2.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 395139398 16 VFLVMLIGIYLLVFFTGDKHTAPK---LGIDLQGGTRVTLTARTPdgsaPSREALAQAQQIISARVNGLGVSGSEVVVDG 92
Cdd:PRK08343 15 LLIVLVLASIVAIFPPGGGPGGFTnlqYGLDLSGGSWIQLKLEGP----VTQETMDLVVEILESRLNALGLKDIKVYPVG 90
|
90 100
....*....|....*....|....*....
gi 395139398 93 DNLV-ITVPGNDGSEARNL-GQTARLYIR 119
Cdd:PRK08343 91 DQYIvVEVPGVDADTAKEIiEKQGVFEAR 119
|
|
| |
