voltage-gated channel subfamily H member 2, partial [Homo sapiens]
ion transporter( domain architecture ID 1000054)
ion transporter such as a voltage-gated cation channel, which enables the selective translocation of cations such as sodium, calcium, or potassium, across cell membranes
List of domain hits
Name | Accession | Description | Interval | E-value | ||
Ion_trans super family | cl37996 | Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
1-54 | 4.89e-07 | ||
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. The actual alignment was detected with superfamily member pfam00520: Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 46.88 E-value: 4.89e-07
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Name | Accession | Description | Interval | E-value | ||
Ion_trans | pfam00520 | Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
1-54 | 4.89e-07 | ||
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 46.88 E-value: 4.89e-07
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Name | Accession | Description | Interval | E-value | ||
Ion_trans | pfam00520 | Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
1-54 | 4.89e-07 | ||
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 46.88 E-value: 4.89e-07
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Blast search parameters | ||||
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