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Conserved domains on  [gi|407063216|gb|AFS84263|]
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Prophage integrase [Escherichia coli O104:H4 str. 2009EL-2071]

Protein Classification

Arm DNA-binding domain-containing protein( domain architecture ID 10595367)

Arm DNA-binding domain-containing protein similar to Yersinia pestis HPI and HAI7 integrases

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Arm-DNA-bind_3 pfam13356
Arm DNA-binding domain; This DNA-binding domain is found at the N-terminus of a wide variety ...
 3-80 1.32e-38

Arm DNA-binding domain; This DNA-binding domain is found at the N-terminus of a wide variety of phage integrase proteins.


:

Pssm-ID: 433141 [Multi-domain]  Cd Length: 78  Bit Score: 126.61  E-value: 1.32e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 407063216    3 LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGID 80
Cdd:pfam13356   1 LTDTAIRAAKPLPGDKKLADGGGLYLRVTPSGSKTWRFRYRFNGKRKTLALGRYPAVSLAQARKKADEARALVAQGID 78
 
Name Accession Description Interval E-value
Arm-DNA-bind_3 pfam13356
Arm DNA-binding domain; This DNA-binding domain is found at the N-terminus of a wide variety ...
 3-80 1.32e-38

Arm DNA-binding domain; This DNA-binding domain is found at the N-terminus of a wide variety of phage integrase proteins.


Pssm-ID: 433141 [Multi-domain]  Cd Length: 78  Bit Score: 126.61  E-value: 1.32e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 407063216    3 LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGID 80
Cdd:pfam13356   1 LTDTAIRAAKPLPGDKKLADGGGLYLRVTPSGSKTWRFRYRFNGKRKTLALGRYPAVSLAQARKKADEARALVAQGID 78
PRK09692 PRK09692
integrase; Provisional
 3-92 5.29e-22

integrase; Provisional


Pssm-ID: 170049 [Multi-domain]  Cd Length: 413  Bit Score: 91.24  E-value: 5.29e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407063216   3 LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRY-RILGKEKT-LALGVYPEVSLSEARTKRDEARKLISEGID 80
Cdd:PRK09692   8 LTDTEIKAAKPKEADYVLYDGDGLELLIKSSGSKIWQFRYyRPLTKTRAkKSFGPYPSVTLADARNYRAESRSLLAKQID 87

                         90
                 ....*....|...
gi 407063216  81 PCE-QKRVKKVSL 92
Cdd:PRK09692  88 PQEhQQEQLRSSL 100
FimB COG0582
Integrase/recombinase, includes phage integrase [Replication, recombination and repair, ...
 2-89 1.90e-21

Integrase/recombinase, includes phage integrase [Replication, recombination and repair, Mobilome: prophages, transposons];


Pssm-ID: 440347 [Multi-domain]  Cd Length: 391  Bit Score: 89.33  E-value: 1.90e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407063216   2 ALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGIDP 81
Cdd:COG0582    1 TLTDTAKKKAKPKDKPYKLGDGGGLLLLVGPSGGKRWRYRYRFRGKRKRLALGVYPGVSLALARARRAEARALLALGIDP 80


                 ....*...
gi 407063216  82 CEQKRVKK 89
Cdd:COG0582   81 SPARKAAK 88
 
Name Accession Description Interval E-value
Arm-DNA-bind_3 pfam13356
Arm DNA-binding domain; This DNA-binding domain is found at the N-terminus of a wide variety ...
 3-80 1.32e-38

Arm DNA-binding domain; This DNA-binding domain is found at the N-terminus of a wide variety of phage integrase proteins.


Pssm-ID: 433141 [Multi-domain]  Cd Length: 78  Bit Score: 126.61  E-value: 1.32e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 407063216    3 LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGID 80
Cdd:pfam13356   1 LTDTAIRAAKPLPGDKKLADGGGLYLRVTPSGSKTWRFRYRFNGKRKTLALGRYPAVSLAQARKKADEARALVAQGID 78
PRK09692 PRK09692
integrase; Provisional
 3-92 5.29e-22

integrase; Provisional


Pssm-ID: 170049 [Multi-domain]  Cd Length: 413  Bit Score: 91.24  E-value: 5.29e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407063216   3 LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRY-RILGKEKT-LALGVYPEVSLSEARTKRDEARKLISEGID 80
Cdd:PRK09692   8 LTDTEIKAAKPKEADYVLYDGDGLELLIKSSGSKIWQFRYyRPLTKTRAkKSFGPYPSVTLADARNYRAESRSLLAKQID 87

                         90
                 ....*....|...
gi 407063216  81 PCE-QKRVKKVSL 92
Cdd:PRK09692  88 PQEhQQEQLRSSL 100
FimB COG0582
Integrase/recombinase, includes phage integrase [Replication, recombination and repair, ...
 2-89 1.90e-21

Integrase/recombinase, includes phage integrase [Replication, recombination and repair, Mobilome: prophages, transposons];


Pssm-ID: 440347 [Multi-domain]  Cd Length: 391  Bit Score: 89.33  E-value: 1.90e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407063216   2 ALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGIDP 81
Cdd:COG0582    1 TLTDTAKKKAKPKDKPYKLGDGGGLLLLVGPSGGKRWRYRYRFRGKRKRLALGVYPGVSLALARARRAEARALLALGIDP 80


                 ....*...
gi 407063216  82 CEQKRVKK 89
Cdd:COG0582   81 SPARKAAK 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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