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Conserved domains on  [gi|409171496|gb|AFV25371|]
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cadherin [Methanolobus psychrophilus R15]

Protein Classification

PGF_pre_PGF family protein( domain architecture ID 10024581)

PGF_pre_PGF family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PGF_pre_PGF TIGR04213
PGF-pre-PGF domain; This domain occurs in archaeal species. Most domains in this family end ...
 23-174 1.16e-53

PGF-pre-PGF domain; This domain occurs in archaeal species. Most domains in this family end with a motif PGF, after which the member sequences change in character to low-complexity sequence (usually Thr-rich) for about 40 residues. The low complexity region usually is followed by a PGF-CTERM domain (TIGR04126), which we suggest is the recognition sequence for archaeosortase A (TIGR04125), a putative protein-sorting transpeptidase. The similarity between the PGF motif in this domain and in the PGF-CTERM domain is highly suggestive.


:

Pssm-ID: 275058  Cd Length: 153  Bit Score: 169.34  E-value: 1.16e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409171496   23 QPPESTTSTYTAVRHVIGGTSVEYDFSGTGSPVISISFDAKDNKGLVVANVQVLSSTPEGIS-TPSGNPYQLMSIDVGSQ 101
Cdd:TIGR04213   1 EPASNVEVKELSQRFVTSGEPVKFDFTENATPVTSIEFDAKKTAGKVTTIVEVLKNTSTLVDeLPPGKVYKNLNIWVGNS 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 409171496  102 GTISSHNANNILIHFKVSREWIRENNIDVSTIRMTRYHDGQWNDMPTYQEREEDDHIYFYAETPGFSIFSVVG 174
Cdd:TIGR04213  81 GFASPNNIENATIGFKVEKSWIEENNIDPSSIVLMRYNEGKWEELPTEKIGEDDGYVYFEAETPGFSPFAITG 153
 
Name Accession Description Interval E-value
PGF_pre_PGF TIGR04213
PGF-pre-PGF domain; This domain occurs in archaeal species. Most domains in this family end ...
 23-174 1.16e-53

PGF-pre-PGF domain; This domain occurs in archaeal species. Most domains in this family end with a motif PGF, after which the member sequences change in character to low-complexity sequence (usually Thr-rich) for about 40 residues. The low complexity region usually is followed by a PGF-CTERM domain (TIGR04126), which we suggest is the recognition sequence for archaeosortase A (TIGR04125), a putative protein-sorting transpeptidase. The similarity between the PGF motif in this domain and in the PGF-CTERM domain is highly suggestive.


Pssm-ID: 275058  Cd Length: 153  Bit Score: 169.34  E-value: 1.16e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409171496   23 QPPESTTSTYTAVRHVIGGTSVEYDFSGTGSPVISISFDAKDNKGLVVANVQVLSSTPEGIS-TPSGNPYQLMSIDVGSQ 101
Cdd:TIGR04213   1 EPASNVEVKELSQRFVTSGEPVKFDFTENATPVTSIEFDAKKTAGKVTTIVEVLKNTSTLVDeLPPGKVYKNLNIWVGNS 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 409171496  102 GTISSHNANNILIHFKVSREWIRENNIDVSTIRMTRYHDGQWNDMPTYQEREEDDHIYFYAETPGFSIFSVVG 174
Cdd:TIGR04213  81 GFASPNNIENATIGFKVEKSWIEENNIDPSSIVLMRYNEGKWEELPTEKIGEDDGYVYFEAETPGFSPFAITG 153
 
Name Accession Description Interval E-value
PGF_pre_PGF TIGR04213
PGF-pre-PGF domain; This domain occurs in archaeal species. Most domains in this family end ...
 23-174 1.16e-53

PGF-pre-PGF domain; This domain occurs in archaeal species. Most domains in this family end with a motif PGF, after which the member sequences change in character to low-complexity sequence (usually Thr-rich) for about 40 residues. The low complexity region usually is followed by a PGF-CTERM domain (TIGR04126), which we suggest is the recognition sequence for archaeosortase A (TIGR04125), a putative protein-sorting transpeptidase. The similarity between the PGF motif in this domain and in the PGF-CTERM domain is highly suggestive.


Pssm-ID: 275058  Cd Length: 153  Bit Score: 169.34  E-value: 1.16e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409171496   23 QPPESTTSTYTAVRHVIGGTSVEYDFSGTGSPVISISFDAKDNKGLVVANVQVLSSTPEGIS-TPSGNPYQLMSIDVGSQ 101
Cdd:TIGR04213   1 EPASNVEVKELSQRFVTSGEPVKFDFTENATPVTSIEFDAKKTAGKVTTIVEVLKNTSTLVDeLPPGKVYKNLNIWVGNS 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 409171496  102 GTISSHNANNILIHFKVSREWIRENNIDVSTIRMTRYHDGQWNDMPTYQEREEDDHIYFYAETPGFSIFSVVG 174
Cdd:TIGR04213  81 GFASPNNIENATIGFKVEKSWIEENNIDPSSIVLMRYNEGKWEELPTEKIGEDDGYVYFEAETPGFSPFAITG 153
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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