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Conserved domains on  [gi|428021235|gb|AFY96928|]
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Protein of unknown function (DUF2933) (plasmid) [Chamaesiphon minutus PCC 6605]

Protein Classification

DUF2933 domain-containing protein( domain architecture ID 10569420)

DUF2933 domain-containing protein similar to Achromobacter sp. protein CopO

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2933 pfam11666
Protein of unknown function (DUF2933); This bacterial family of proteins has no known function.
 29-102 3.92e-11

Protein of unknown function (DUF2933); This bacterial family of proteins has no known function.


:

Pssm-ID: 431991  Cd Length: 50  Bit Score: 53.41  E-value: 3.92e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 428021235   29 LVSVGIIVYFLVTEHWAHLGGYFPLSLLLIFVIMHLFMHGghgghggnngdnrrisgredrpnwGHGGHGNNDP 102
Cdd:pfam11666   1 LGFLAIAAFFLLTEHRAHLLGYLPYLLLLACPLMHLFMHG------------------------GHGGHGGHDS 50
 
Name Accession Description Interval E-value
DUF2933 pfam11666
Protein of unknown function (DUF2933); This bacterial family of proteins has no known function.
 29-102 3.92e-11

Protein of unknown function (DUF2933); This bacterial family of proteins has no known function.


Pssm-ID: 431991  Cd Length: 50  Bit Score: 53.41  E-value: 3.92e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 428021235   29 LVSVGIIVYFLVTEHWAHLGGYFPLSLLLIFVIMHLFMHGghgghggnngdnrrisgredrpnwGHGGHGNNDP 102
Cdd:pfam11666   1 LGFLAIAAFFLLTEHRAHLLGYLPYLLLLACPLMHLFMHG------------------------GHGGHGGHDS 50
 
Name Accession Description Interval E-value
DUF2933 pfam11666
Protein of unknown function (DUF2933); This bacterial family of proteins has no known function.
 29-102 3.92e-11

Protein of unknown function (DUF2933); This bacterial family of proteins has no known function.


Pssm-ID: 431991  Cd Length: 50  Bit Score: 53.41  E-value: 3.92e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 428021235   29 LVSVGIIVYFLVTEHWAHLGGYFPLSLLLIFVIMHLFMHGghgghggnngdnrrisgredrpnwGHGGHGNNDP 102
Cdd:pfam11666   1 LGFLAIAAFFLLTEHRAHLLGYLPYLLLLACPLMHLFMHG------------------------GHGGHGGHDS 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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