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Conserved domains on  [gi|514031489|gb|AGO28236|]
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30S ribosomal subunit protein S20 [Candidatus Tremblaya phenacola PAVE]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S20p super family cl00384
Ribosomal protein S20; Bacterial ribosomal protein S20 interacts with 16S rRNA.
 12-86 2.46e-09

Ribosomal protein S20; Bacterial ribosomal protein S20 interacts with 16S rRNA.


The actual alignment was detected with superfamily member COG0268:

Pssm-ID: 469752  Cd Length: 87  Bit Score: 49.31  E-value: 2.46e-09
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 514031489 12 RNKGVVVKKARNSSFKAKLSRSLGLLKDAIITGRPEnECREEFGALAKMLDIISNKGIFHKNKAARYKRRMATLI 86
Cdd:COG0268  10 RIRQNEKRRLRNRARKSRLRTAIKKVRKAIAAGDKE-AAQEALKAAQSKLDKAASKGVIHKNKAARKKSRLAKKV 83
 
Name Accession Description Interval E-value
RpsT COG0268
Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S20 ...
 12-86 2.46e-09

Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S20 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440038  Cd Length: 87  Bit Score: 49.31  E-value: 2.46e-09
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 514031489 12 RNKGVVVKKARNSSFKAKLSRSLGLLKDAIITGRPEnECREEFGALAKMLDIISNKGIFHKNKAARYKRRMATLI 86
Cdd:COG0268  10 RIRQNEKRRLRNRARKSRLRTAIKKVRKAIAAGDKE-AAQEALKAAQSKLDKAASKGVIHKNKAARKKSRLAKKV 83
Ribosomal_S20p pfam01649
Ribosomal protein S20; Bacterial ribosomal protein S20 interacts with 16S rRNA.
 19-83 4.55e-04

Ribosomal protein S20; Bacterial ribosomal protein S20 interacts with 16S rRNA.


Pssm-ID: 460280  Cd Length: 76  Bit Score: 35.48  E-value: 4.55e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 514031489  19 KKARNSSFKAKLSRSLGLLKDAIITGRPENEcREEFGALAKMLDIISNKGIFHKNKAARYKRRMA 83
Cdd:pfam01649 12 RRLRNKAVKSRVRTAIKKVRAAVAAGDKEAA-EAALKAAVSKIDKAASKGVIHKNTAARKKSRLA 75
 
Name Accession Description Interval E-value
RpsT COG0268
Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S20 ...
 12-86 2.46e-09

Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S20 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440038  Cd Length: 87  Bit Score: 49.31  E-value: 2.46e-09
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 514031489 12 RNKGVVVKKARNSSFKAKLSRSLGLLKDAIITGRPEnECREEFGALAKMLDIISNKGIFHKNKAARYKRRMATLI 86
Cdd:COG0268  10 RIRQNEKRRLRNRARKSRLRTAIKKVRKAIAAGDKE-AAQEALKAAQSKLDKAASKGVIHKNKAARKKSRLAKKV 83
Ribosomal_S20p pfam01649
Ribosomal protein S20; Bacterial ribosomal protein S20 interacts with 16S rRNA.
 19-83 4.55e-04

Ribosomal protein S20; Bacterial ribosomal protein S20 interacts with 16S rRNA.


Pssm-ID: 460280  Cd Length: 76  Bit Score: 35.48  E-value: 4.55e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 514031489  19 KKARNSSFKAKLSRSLGLLKDAIITGRPENEcREEFGALAKMLDIISNKGIFHKNKAARYKRRMA 83
Cdd:pfam01649 12 RRLRNKAVKSRVRTAIKKVRAAVAAGDKEAA-EAALKAAVSKIDKAASKGVIHKNTAARKKSRLA 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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