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Conserved domains on  [gi|528750033|gb|AGS44168|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Candida tetrigidarum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
17-103 1.25e-24

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


:

Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 89.79  E-value: 1.25e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528750033   17 IGINLLLAPSNAYVDKTGPFECGFTSYQQSRAAFSVAFILVAILFLPFDLEISSILPYVVSAYHNGLYGLIVLIIFLGLL 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80


                  ....*..
gi 528750033   97 VVAFVLE 103
Cdd:pfam00507  81 LVGLVYA 87
 
Name Accession Description Interval E-value
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
17-103 1.25e-24

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 89.79  E-value: 1.25e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528750033   17 IGINLLLAPSNAYVDKTGPFECGFTSYQQSRAAFSVAFILVAILFLPFDLEISSILPYVVSAYHNGLYGLIVLIIFLGLL 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80


                  ....*..
gi 528750033   97 VVAFVLE 103
Cdd:pfam00507  81 LVGLVYA 87
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 2-104 1.14e-18

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 75.29  E-value: 1.14e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528750033   2 FLYYLILAPIVAVVLIGINLLLAPSNAYVDKTGPFECGFTSYQQSRAAFSVAFILVAILFLPFDLEISSILPYVVSAYHN 81
Cdd:PRK06602  11 FLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREI 90

                         90       100
                 ....*....|....*....|...
gi 528750033  82 GLYGLIVLIIFLGLLVVAFVLEV 104
Cdd:PRK06602  91 GWLGFVEAMIFILVLLVGLVYLW 113
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 2-101 1.58e-18

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 74.77  E-value: 1.58e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528750033   2 FLYYLILAPIVAVVLIGINLLLAPSNAYVDKTGPFECGFTSYQQSRAAFSVAFILVAILFLPFDLEISSILPYVVSAYHN 81
Cdd:COG0838    8 ILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFREL 87

                         90       100
                 ....*....|....*....|
gi 528750033  82 GLYGLIVLIIFLGLLVVAFV 101
Cdd:COG0838   88 GWFGLIEMLVFIAILLVGLI 107
 
Name Accession Description Interval E-value
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
17-103 1.25e-24

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 89.79  E-value: 1.25e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528750033   17 IGINLLLAPSNAYVDKTGPFECGFTSYQQSRAAFSVAFILVAILFLPFDLEISSILPYVVSAYHNGLYGLIVLIIFLGLL 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80


                  ....*..
gi 528750033   97 VVAFVLE 103
Cdd:pfam00507  81 LVGLVYA 87
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 2-104 1.14e-18

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 75.29  E-value: 1.14e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528750033   2 FLYYLILAPIVAVVLIGINLLLAPSNAYVDKTGPFECGFTSYQQSRAAFSVAFILVAILFLPFDLEISSILPYVVSAYHN 81
Cdd:PRK06602  11 FLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREI 90

                         90       100
                 ....*....|....*....|...
gi 528750033  82 GLYGLIVLIIFLGLLVVAFVLEV 104
Cdd:PRK06602  91 GWLGFVEAMIFILVLLVGLVYLW 113
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 2-101 1.58e-18

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 74.77  E-value: 1.58e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528750033   2 FLYYLILAPIVAVVLIGINLLLAPSNAYVDKTGPFECGFTSYQQSRAAFSVAFILVAILFLPFDLEISSILPYVVSAYHN 81
Cdd:COG0838    8 ILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFREL 87

                         90       100
                 ....*....|....*....|
gi 528750033  82 GLYGLIVLIIFLGLLVVAFV 101
Cdd:COG0838   88 GWFGLIEMLVFIAILLVGLI 107
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-98 6.45e-14

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 62.95  E-value: 6.45e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528750033   1 MFLYYLILAPIVAVVLIGINLLLAPSNAY-VDKTGPFECGFTSYQQSRAAFSVAFILVAILFLPFDLEISSILPYVVS-A 78
Cdd:MTH00148   3 SILLSLLFALILSPVLLLLGLVLSKRSYSdREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSlG 82

                         90       100
                 ....*....|....*....|
gi 528750033  79 YHNGLYGLIVLIIFLGLLVV 98
Cdd:MTH00148  83 SSFSVWSLTSLFIFLLILIL 102
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 1-73 4.30e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 60.78  E-value: 4.30e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528750033   1 MFLYYLILAPIVAVVLIGINLLLAPSNAYVDKTGPFECGFTSYQQSRAAFSVAFILVAILFLPFDLEISSILP 73
Cdd:MTH00069   1 LIMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLP 73
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 2-109 6.06e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 60.30  E-value: 6.06e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528750033   2 FLYYLILAPIVAVVLIGINLLLAPSNAYVDKTGPFECGFTSYQQSRAAFSVAFILVAILFLPFDLEISSILPYVVSAYHN 81
Cdd:MTH00203   4 IMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLS 83

                         90       100
                 ....*....|....*....|....*...
gi 528750033  82 GlYGLIVLIIFLGLLVVAFVLEVLLQVL 109
Cdd:MTH00203  84 S-LSLLLAFLFLILLTLGLIYEWLQGGL 110
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 4-103 7.35e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 60.49  E-value: 7.35e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528750033   4 YYLILAPIVAVVLIGINLLLAPSNAYVDKTGPFECGFTSYQQSRAAFSVAFILVAILFLPFDLEISSILPYVVSAYHNGL 83
Cdd:MTH00055  10 ILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGL 89

                         90       100
                 ....*....|....*....|
gi 528750033  84 YGLIVLIIFLGLLVVAFVLE 103
Cdd:MTH00055  90 FGFWVMYLFLIILTIGLIYE 109
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 6-73 1.09e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 59.89  E-value: 1.09e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 528750033   6 LILAPIVAVVLIGINLLLAPSNAYVDKTGPFECGFTSYQQSRAAFSVAFILVAILFLPFDLEISSILP 73
Cdd:MTH00113   7 LTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLP 74
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 6-73 1.64e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 59.18  E-value: 1.64e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 528750033   6 LILAPIVAVVLIGINLLLAPSNAYVDKTGPFECGFTSYQQSRAAFSVAFILVAILFLPFDLEISSILP 73
Cdd:MTH00106   7 LLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLP 74
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 1-103 3.37e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 58.63  E-value: 3.37e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528750033   1 MFLYYLILAPIVAVVLIGINLLLAPSNAY-VDKTGPFECGFTSYQQSRAAFSVAFILVAILFLPFDLEISSILPYVVSA- 78
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMdREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFk 80

                         90       100
                 ....*....|....*....|....*
gi 528750033  79 YHNGLYGLIVLIIFLGLLVVAFVLE 103
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYE 105
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-103 4.13e-12

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 58.45  E-value: 4.13e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528750033   1 MFLYYLILAPIVAVVLIGINLLLAPSNAYVDKTGPFECGFTSYQQSRAAFSVAFILVAILFLPFDLEISSILPYVVSAYH 80
Cdd:MTH00042   3 NLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLI 82

                         90       100
                 ....*....|....*....|....
gi 528750033  81 NGLYGLIVL-IIFLGLLVVAFVLE 103
Cdd:MTH00042  83 TNPSTLLPIsLIFLIILTIGLVYE 106
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 2-103 1.32e-11

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 56.99  E-value: 1.32e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528750033   2 FLYYLILAPIVAVVLIGINLLLAPSNAYVDKTGPFECGFTSYQQSRAAFSVAFILVAILFLPFDLEISSILPYVVSAYHN 81
Cdd:MTH00018   3 LFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQI 82

                         90       100
                 ....*....|....*....|..
gi 528750033  82 GLYGLIVLIIFLGLLVVAFVLE 103
Cdd:MTH00018  83 APFGFWTMVGFLFILTLGLIYE 104
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-103 1.09e-10

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 54.61  E-value: 1.09e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528750033   1 MFLYYLILAPIVAVVLIGINLLL-APSNAYVDKTGPFECGFTSYQQSRAAFSVAFILVAILFLPFDLEISSILPYVVSA- 78
Cdd:MTH00202   3 LILFMSILSILISSLLFLVSWMLsFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLk 82

                         90       100
                 ....*....|....*....|....*
gi 528750033  79 YHNGLYGLIVLIIFLGLLVVAFVLE 103
Cdd:MTH00202  83 SSWSKGGLLGGTIFLLILIGGLIHE 107
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 6-73 3.54e-10

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 53.38  E-value: 3.54e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 528750033   6 LILAPIVAVVLIGINLLLAPSNAYVDKTGPFECGFTSYQQSRAAFSVAFILVAILFLPFDLEISSILP 73
Cdd:MTH00136   8 LTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLP 75
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-103 1.94e-08

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 48.70  E-value: 1.94e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528750033   1 MFLYYLILAPIVavvLIGINLLLAPSNAYVDKTGPFECGFTSYQQSRAAFSVAFILVAILFLPFDLEISSILPyVVSAYH 80
Cdd:MTH00012   7 PMMISLILPPLV---LGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMP-VPTILM 82

                         90       100
                 ....*....|....*....|....*
gi 528750033  81 NGLYGLIVL--IIFLGLLVVAFVLE 103
Cdd:MTH00012  83 TSTSKTVVYtsILFLLILVIGLIHE 107
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 12-112 1.92e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 46.46  E-value: 1.92e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528750033  12 VAVVLIGINLLLAPSNAYVDKTGP-------FECGFTSYQQSRAAFSVAFILVAILFLPFDLEISSILPYVVSAYHNGLY 84
Cdd:MTH00030  16 VGIILLLVSISFTLGNSRIGLTKPdsekssiYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLF 95

                         90       100
                 ....*....|....*....|....*...
gi 528750033  85 GLIVLIIFLGLLVVAFVLEVLLQVLKID 112
Cdd:MTH00030  96 SFWIVYTFLIVLAIGLAYEWIKGGLEWD 123
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
1-110 9.82e-07

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 44.35  E-value: 9.82e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528750033   1 MFLYYLILAPIVAVVligINLLLAPSNAYVDKTGPFECGFTSYQQSRAAFSVAFILVAILFLPFDLEISSILPYVVSAYH 80
Cdd:PRK07756  14 IFLLLGILLPVVALT---LGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDK 90

                         90       100       110
                 ....*....|....*....|....*....|
gi 528750033  81 NGLYGLIVLIIFLGLLVVAFVLEVLLQVLK 110
Cdd:PRK07756  91 LGLFALIEMLIFVVMLLVGLAYAWKKKVLQ 120
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-94 1.29e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 36.03  E-value: 1.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528750033   1 MFLYYLILAPIVAVVLIGINLLLAPSNAYVDKTGPFECGFTSYQQSRAAFSVAFILVAILFLPFDLEISSILPYVVSAYH 80
Cdd:MTH00092   3 VLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVSDFS 82

                         90
                 ....*....|....
gi 528750033  81 NGLYGLIVLIIFLG 94
Cdd:MTH00092  83 SLISFFMLMIFIFF 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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