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Conserved domains on  [gi|643022683|gb|AIA87934|]
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Glyco_hydro_3, partial [uncultured Marinomonas sp.]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BglX super family cl34276
Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism];
1-72 8.78e-11

Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism];


The actual alignment was detected with superfamily member COG1472:

Pssm-ID: 441081 [Multi-domain]  Cd Length: 463  Bit Score: 56.25  E-value: 8.78e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 643022683   1 RWGIereelRPIVVSDGPAGVskvtvNKAKAEKAICYPAGSAMASTWNVDLESRLGQAMGLECREHGVDLLL 72
Cdd:COG1472   51 RLGI-----PLLIGTDAEHGV-----ANRPAGGATVFPQAIALAATWDPELAERVGRAIAREARALGINWNL 112
 
Name Accession Description Interval E-value
BglX COG1472
Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism];
1-72 8.78e-11

Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism];


Pssm-ID: 441081 [Multi-domain]  Cd Length: 463  Bit Score: 56.25  E-value: 8.78e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 643022683   1 RWGIereelRPIVVSDGPAGVskvtvNKAKAEKAICYPAGSAMASTWNVDLESRLGQAMGLECREHGVDLLL 72
Cdd:COG1472   51 RLGI-----PLLIGTDAEHGV-----ANRPAGGATVFPQAIALAATWDPELAERVGRAIAREARALGINWNL 112
PRK13477 PRK13477
bifunctional pantoate--beta-alanine ligase/(d)CMP kinase;
10-52 9.17e-04

bifunctional pantoate--beta-alanine ligase/(d)CMP kinase;


Pssm-ID: 237393 [Multi-domain]  Cd Length: 512  Bit Score: 36.40  E-value: 9.17e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 643022683  10 RPIVVSDGPAGVSKVTVNKAKAEK-AICYPAGSAM--ASTW-----NVDLE 52
Cdd:PRK13477 284 QPIIAIDGPAGAGKSTVTRAVAKKlGLLYLDTGAMyrAVTWlvlqeGIDPQ 334
 
Name Accession Description Interval E-value
BglX COG1472
Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism];
1-72 8.78e-11

Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism];


Pssm-ID: 441081 [Multi-domain]  Cd Length: 463  Bit Score: 56.25  E-value: 8.78e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 643022683   1 RWGIereelRPIVVSDGPAGVskvtvNKAKAEKAICYPAGSAMASTWNVDLESRLGQAMGLECREHGVDLLL 72
Cdd:COG1472   51 RLGI-----PLLIGTDAEHGV-----ANRPAGGATVFPQAIALAATWDPELAERVGRAIAREARALGINWNL 112
PRK13477 PRK13477
bifunctional pantoate--beta-alanine ligase/(d)CMP kinase;
10-52 9.17e-04

bifunctional pantoate--beta-alanine ligase/(d)CMP kinase;


Pssm-ID: 237393 [Multi-domain]  Cd Length: 512  Bit Score: 36.40  E-value: 9.17e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 643022683  10 RPIVVSDGPAGVSKVTVNKAKAEK-AICYPAGSAM--ASTW-----NVDLE 52
Cdd:PRK13477 284 QPIIAIDGPAGAGKSTVTRAVAKKlGLLYLDTGAMyrAVTWlvlqeGIDPQ 334
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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