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Conserved domains on  [gi|672722140|gb|AIJ54017|]
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FAD binding domain protein [Brucella abortus]

Protein Classification

FAD-binding oxidoreductase( domain architecture ID 10012760)

FAD-binding oxidoreductase catalyzes the oxidation or reduction of a specific substrate using flavin adenine dinucleotide (FAD) as a cofactor

Gene Ontology:  GO:0071949|GO:0016491

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PRK06475 PRK06475
FAD-binding protein;
1-395 0e+00

FAD-binding protein;


:

Pssm-ID: 180582 [Multi-domain]  Cd Length: 400  Bit Score: 667.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   1 MIAGAGVAGLSAALELAARGWRVQIFEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKARPLL 80
Cdd:PRK06475   6 LIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKARPLL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  81 AMQLGDTARNRWHHPYIVCHRADLQSALLDACRNAPGIEINLGAEMTDQRMTGNSITATIKRENSVETVEAAYLVACDGV 160
Cdd:PRK06475  86 AMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGV 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 161 WSMQRAKAGYSKARFSGHIAWRTTLAADALPASFLGAMPEHKAVSAWLGNKAHFIAYPVKGGNFFNFVAITGGENPGEVW 240
Cdd:PRK06475 166 WSMLRAKAGFSKARFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAITGGENPGEVW 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 241 SKTGDHAHLQSIYADWSKPVHEILAATRDWTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAQA 320
Cdd:PRK06475 246 SKTGDKAHLKSIYADWNKPVLQILAAIDEWTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEA 325

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 672722140 321 LDSDDQAAGLKRFDSVRKERIAAVAKRGQLNRFAYHATGIFALGRNMLFAVRSPETFLKDLDWLYGYDAALAVRN 395
Cdd:PRK06475 326 LDSDDQSAGLKRFDSVRKERIAAVAKRGQLNRFAYHATGIFALGRNMLFAIRSPESFLKDLDWLYGYDAANAVRN 400
 
Name Accession Description Interval E-value
PRK06475 PRK06475
FAD-binding protein;
1-395 0e+00

FAD-binding protein;


Pssm-ID: 180582 [Multi-domain]  Cd Length: 400  Bit Score: 667.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   1 MIAGAGVAGLSAALELAARGWRVQIFEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKARPLL 80
Cdd:PRK06475   6 LIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKARPLL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  81 AMQLGDTARNRWHHPYIVCHRADLQSALLDACRNAPGIEINLGAEMTDQRMTGNSITATIKRENSVETVEAAYLVACDGV 160
Cdd:PRK06475  86 AMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGV 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 161 WSMQRAKAGYSKARFSGHIAWRTTLAADALPASFLGAMPEHKAVSAWLGNKAHFIAYPVKGGNFFNFVAITGGENPGEVW 240
Cdd:PRK06475 166 WSMLRAKAGFSKARFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAITGGENPGEVW 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 241 SKTGDHAHLQSIYADWSKPVHEILAATRDWTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAQA 320
Cdd:PRK06475 246 SKTGDKAHLKSIYADWNKPVLQILAAIDEWTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEA 325

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 672722140 321 LDSDDQAAGLKRFDSVRKERIAAVAKRGQLNRFAYHATGIFALGRNMLFAVRSPETFLKDLDWLYGYDAALAVRN 395
Cdd:PRK06475 326 LDSDDQSAGLKRFDSVRKERIAAVAKRGQLNRFAYHATGIFALGRNMLFAIRSPESFLKDLDWLYGYDAANAVRN 400
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 2-383 2.56e-35

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 132.37  E-value: 2.56e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   2 IAGAGVAGLSAALELAARGWRVQIFEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKARPLLA 81
Cdd:COG0654    8 IVGGGPAGLALALALARAGIRVTVVERAPPPRPDGRGIALSPRSLELLRRLGLWDRLLARGAPIRGIRVRDGSDGRVLAR 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  82 MQLGDTArnrwHHPYIVCHRADLQSALLDACRnAPGIEINLGAEMTDQRMTGNSITATIKREnsvETVEAAYLVACDGVW 161
Cdd:COG0654   88 FDAAETG----LPAGLVVPRADLERALLEAAR-ALGVELRFGTEVTGLEQDADGVTVTLADG---RTLRADLVVGADGAR 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 162 SMQRAKAGyskARFSGHIAWRTTLAADAlpasflgampehkavsawlgnkahfiaypvkggnffnfvaitggenpgevws 241
Cdd:COG0654  160 SAVRRLLG---IGFTGRDYPQRALWAGV---------------------------------------------------- 184

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 242 ktgdHAHLQSIYADWSKPVHEILAATrDWTYWPLFEMADAQFVGPdRTIFLGDASHAVTPFAAQGAAM----AIEDAAAL 317
Cdd:COG0654  185 ----RTELRARLAAAGPRLGELLELS-PRSAFPLRRRRAERWRRG-RVVLLGDAAHTMHPLGGQGANLalrdAAALAWKL 258

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 672722140 318 AQALDSDDQAAGLKRFDSVRKERIAAVAKRGQLNRFAYHATG-IFALGRNMLFAVRSPETFLKDLDW 383
Cdd:COG0654  259 AAALRGRDDEAALARYERERRPRAARVQRAADALGRLFHPDSpPLRLLRNAGLRLLDRLPPLKGGGL 325
FAD_binding_3 pfam01494
FAD binding domain; This domain is involved in FAD binding in a number of enzymes.
 2-306 5.40e-16

FAD binding domain; This domain is involved in FAD binding in a number of enzymes.


Pssm-ID: 396193 [Multi-domain]  Cd Length: 348  Bit Score: 78.52  E-value: 5.40e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140    2 IAGAGVAGLSAALELAARGWRVQIFEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKAL-YLMDGRKARPLL 80
Cdd:pfam01494   6 IVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAHGLNQRTMELLRQAGLEDRILAEGVPHEGMgLAFYNTRRRADL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   81 AMQLGdtarnrwhHPYI-VCHRADLQSALLDACRNApGIEINLGAEMTDQRMTGNSITATIK-RENSVE-TVEAAYLVAC 157
Cdd:pfam01494  86 DFLTS--------PPRVtVYPQTELEPILVEHAEAR-GAQVRFGTEVLSLEQDGDGVTAVVRdRRDGEEyTVRAKYLVGC 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  158 DGVWSMQRAKAGYSKARFSGHIAWRTTLAADALPASflgAMPEHKAVSAWLGN--KAHFIAYPVKGGNF--FNFVAITG- 232
Cdd:pfam01494 157 DGGRSPVRKTLGIEFEGFEGVPFGSLDVLFDAPDLS---DPVERAFVHYLIYAphSRGFMVGPWRSAGRerYYVQVPWDe 233

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 672722140  233 -GENPGEVWSKTGDHAHLQSIyADWSKPVHEILAATRdWTYWPlfEMADAQFVGPdrtIFL-GDASHAVTPFAAQG 306
Cdd:pfam01494 234 eVEERPEEFTDEELKQRLRSI-VGIDLALVEILWKSI-WGVAS--RVATRYRKGR---VFLaGDAAHIHPPTGGQG 302
Ubi-OHases TIGR01988
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; This model represents a ...
 2-306 9.53e-12

Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]


Pssm-ID: 273913 [Multi-domain]  Cd Length: 385  Bit Score: 66.07  E-value: 9.53e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140    2 IAGAGVAGLSAALELAARGWRVQIFEKAQELSEVGAGLQ-----LAPNAMRHLERLGVADRLSGTGVTP-KALYLMDGR- 74
Cdd:TIGR01988   4 IVGGGMVGLALALALARSGLKVALIEATPLPAPADPGFDnrvsaLSAASIRLLEKLGVWDKIEPARAQPiRDIHVSDGGs 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   75 ------KARPLLAMQLGdtarnrwhhpYIVCHRaDLQSALLDACRNAPGIEINLGAEMTDQRMTGNSitATIKRENSvET 148
Cdd:TIGR01988  84 fgalrfDADEIGLEALG----------YVVENR-VLQQALWERLQELPNVTLLCPARVVELPRHSDH--VELTLDDG-QQ 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  149 VEAAYLVACDGVWSMQRAKAGyskARFSGHIAWRTTLAAdalpasFLGAMPEHKAVsAWlgnkAHF-----IAY-PVKGg 222
Cdd:TIGR01988 150 LRARLLVGADGANSKVRQLAG---IPTTGWDYGQSAVVA------NVKHERPHQGT-AW----ERFtptgpLALlPLPD- 214

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  223 nffNFVAItggenpgeVWSKTGDHAH-LQSIyadwskPVHEILAATR---DWTY-----------WPLFEMADAQFVGPd 287
Cdd:TIGR01988 215 ---NRSSL--------VWTLPPEEAErLLAL------SDEEFLAELQrafGSRLgaitlvgerhaFPLSLTHAKRYVAP- 276

                         330
                  ....*....|....*....
gi 672722140  288 RTIFLGDASHAVTPFAAQG 306
Cdd:TIGR01988 277 RLALIGDAAHTIHPLAGQG 295
 
Name Accession Description Interval E-value
PRK06475 PRK06475
FAD-binding protein;
1-395 0e+00

FAD-binding protein;


Pssm-ID: 180582 [Multi-domain]  Cd Length: 400  Bit Score: 667.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   1 MIAGAGVAGLSAALELAARGWRVQIFEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKARPLL 80
Cdd:PRK06475   6 LIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKARPLL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  81 AMQLGDTARNRWHHPYIVCHRADLQSALLDACRNAPGIEINLGAEMTDQRMTGNSITATIKRENSVETVEAAYLVACDGV 160
Cdd:PRK06475  86 AMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGV 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 161 WSMQRAKAGYSKARFSGHIAWRTTLAADALPASFLGAMPEHKAVSAWLGNKAHFIAYPVKGGNFFNFVAITGGENPGEVW 240
Cdd:PRK06475 166 WSMLRAKAGFSKARFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAITGGENPGEVW 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 241 SKTGDHAHLQSIYADWSKPVHEILAATRDWTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAQA 320
Cdd:PRK06475 246 SKTGDKAHLKSIYADWNKPVLQILAAIDEWTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEA 325

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 672722140 321 LDSDDQAAGLKRFDSVRKERIAAVAKRGQLNRFAYHATGIFALGRNMLFAVRSPETFLKDLDWLYGYDAALAVRN 395
Cdd:PRK06475 326 LDSDDQSAGLKRFDSVRKERIAAVAKRGQLNRFAYHATGIFALGRNMLFAIRSPESFLKDLDWLYGYDAANAVRN 400
PRK08163 PRK08163
3-hydroxybenzoate 6-monooxygenase;
1-389 1.81e-73

3-hydroxybenzoate 6-monooxygenase;


Pssm-ID: 181262 [Multi-domain]  Cd Length: 396  Bit Score: 234.16  E-value: 1.81e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   1 MIAGAGVAGLSAALELAARGWRVQIFEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKARPLL 80
Cdd:PRK08163   8 LIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDAEEVV 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  81 AMQLGDTARNRWHHPYIVCHRADLQSALLDACRNAPGIEINLGAEMTDQRMTGNSITATIKRENsveTVEAAYLVACDGV 160
Cdd:PRK08163  88 RIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGN---RWTGDALIGCDGV 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 161 WSMQRAKAGYSKARFSGHIAWRTTLAADalpasflgAMPEH---KAVSAWLGNKAHFIAYPVKGGNFFNFVAITGGENPG 237
Cdd:PRK08163 165 KSVVRQSLVGDAPRVTGHVVYRAVIDVD--------DMPEDlriNAPVLWAGPHCHLVHYPLRGGEQYNLVVTFHSREQE 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 238 EVWSKTGDHAHLQSIYADWSKPVHEILAATRDWTYWPLfemADAQFVGP---DRTIFLGDASHAVTPFAAQGAAMAI--E 312
Cdd:PRK08163 237 EWGVKDGSKEEVLSYFEGIHPRPRQMLDKPTSWKRWAT---ADREPVAKwstGRVTLLGDAAHPMTQYMAQGACMALedA 313

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 672722140 313 DAAALAQALDSDDQAAGLKRFDSVRKERIAAVAKRGQLNRFAYHATGIFALGRNMLFAVRSPETFLKDLDWLYGYDA 389
Cdd:PRK08163 314 VTLGKALEGCDGDAEAAFALYESVRIPRTARVVLSAREMGRIYHAKGVERQVRNLLWKGRTQEQFYDALEWLYGWKE 390
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 2-383 2.56e-35

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 132.37  E-value: 2.56e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   2 IAGAGVAGLSAALELAARGWRVQIFEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKARPLLA 81
Cdd:COG0654    8 IVGGGPAGLALALALARAGIRVTVVERAPPPRPDGRGIALSPRSLELLRRLGLWDRLLARGAPIRGIRVRDGSDGRVLAR 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  82 MQLGDTArnrwHHPYIVCHRADLQSALLDACRnAPGIEINLGAEMTDQRMTGNSITATIKREnsvETVEAAYLVACDGVW 161
Cdd:COG0654   88 FDAAETG----LPAGLVVPRADLERALLEAAR-ALGVELRFGTEVTGLEQDADGVTVTLADG---RTLRADLVVGADGAR 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 162 SMQRAKAGyskARFSGHIAWRTTLAADAlpasflgampehkavsawlgnkahfiaypvkggnffnfvaitggenpgevws 241
Cdd:COG0654  160 SAVRRLLG---IGFTGRDYPQRALWAGV---------------------------------------------------- 184

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 242 ktgdHAHLQSIYADWSKPVHEILAATrDWTYWPLFEMADAQFVGPdRTIFLGDASHAVTPFAAQGAAM----AIEDAAAL 317
Cdd:COG0654  185 ----RTELRARLAAAGPRLGELLELS-PRSAFPLRRRRAERWRRG-RVVLLGDAAHTMHPLGGQGANLalrdAAALAWKL 258

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 672722140 318 AQALDSDDQAAGLKRFDSVRKERIAAVAKRGQLNRFAYHATG-IFALGRNMLFAVRSPETFLKDLDW 383
Cdd:COG0654  259 AAALRGRDDEAALARYERERRPRAARVQRAADALGRLFHPDSpPLRLLRNAGLRLLDRLPPLKGGGL 325
PRK07538 PRK07538
hypothetical protein; Provisional
 2-306 1.19e-28

hypothetical protein; Provisional


Pssm-ID: 236046 [Multi-domain]  Cd Length: 413  Bit Score: 115.76  E-value: 1.19e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   2 IAGAGVAGLSAALELAARGWRVQIFEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDgRKARPLLA 81
Cdd:PRK07538   5 IAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFN-RHGQRIWS 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  82 MQLGDTARNRWhhPYIVCHRADLQSALLDACRNapgieiNLGAE--MTDQRMTG------NSITATIKRENSVE-TVEAA 152
Cdd:PRK07538  84 EPRGLAAGYDW--PQYSIHRGELQMLLLDAVRE------RLGPDavRTGHRVVGfeqdadVTVVFLGDRAGGDLvSVRGD 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 153 YLVACDGVWSMQRAK--AGYSKARFSGHIAWR-TTLAADALP-ASFLGAmpehkavsAWLGNKahFIAYPV------KGG 222
Cdd:PRK07538 156 VLIGADGIHSAVRAQlyPDEGPPRWNGVMMWRgVTEAPPFLTgRSMVMA--------GHLDGK--LVVYPIsepvdaDGR 225

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 223 NFFNFVAI----TGGENPGEVWSKTGDHAHLQSIYADWSKPVHE----ILAATRDWTYwPlfeMAD---AQFVGPDRTIF 291
Cdd:PRK07538 226 QLINWVAEvrvdDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDvpalIRAAEAIYEY-P---MVDrdpLPRWTRGRVTL 301

                        330
                 ....*....|....*
gi 672722140 292 LGDASHAVTPFAAQG 306
Cdd:PRK07538 302 LGDAAHPMYPVGSNG 316
PRK06753 PRK06753
hypothetical protein; Provisional
 1-347 5.39e-26

hypothetical protein; Provisional


Pssm-ID: 168661 [Multi-domain]  Cd Length: 373  Bit Score: 107.47  E-value: 5.39e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   1 MIAGAGVAGLSAALELAARGWRVQIFEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDgRKARPLL 80
Cdd:PRK06753   4 AIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLD-DKGTLLN 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  81 AMQLGDTARNrwhhpyIVCHRADLQSALLDacrNAPGIEINLGAEMTDQRMTGNSITATIKRENSVETveaAYLVACDGV 160
Cdd:PRK06753  83 KVKLKSNTLN------VTLHRQTLIDIIKS---YVKEDAIFTGKEVTKIENETDKVTIHFADGESEAF---DLCIGADGI 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 161 WSMQRAK-AGYSKARFSGHIAWRTTLAADALPASflgampeHKAVSAWlGNKAHFIAYPVKGGNFFNFVAITGGENPGEV 239
Cdd:PRK06753 151 HSKVRQSvNADSKVRYQGYTCFRGLIDDIDLKLP-------DCAKEYW-GTKGRFGIVPLLNNQAYWFITINAKERDPKY 222

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 240 wsKTGDHAHLQSIYADWSKPVHEIL--AATRDWTYWPLFEMAD-AQFVGpDRTIFLGDASHAVTPFAAQGAAMAIEDAAA 316
Cdd:PRK06753 223 --SSFGKPHLQAYFNHYPNEVREILdkQSETGILHHDIYDLKPlKSFVY-GRIVLLGDAAHATTPNMGQGAGQAMEDAIV 299

                        330       340       350
                 ....*....|....*....|....*....|.
gi 672722140 317 LAQALDSDDQAAGLKRFDSVRKERIAAVAKR 347
Cdd:PRK06753 300 LANCLNAYDFEKALQRYDKIRVKHTAKVIKR 330
FAD_binding_3 pfam01494
FAD binding domain; This domain is involved in FAD binding in a number of enzymes.
 2-306 5.40e-16

FAD binding domain; This domain is involved in FAD binding in a number of enzymes.


Pssm-ID: 396193 [Multi-domain]  Cd Length: 348  Bit Score: 78.52  E-value: 5.40e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140    2 IAGAGVAGLSAALELAARGWRVQIFEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKAL-YLMDGRKARPLL 80
Cdd:pfam01494   6 IVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAHGLNQRTMELLRQAGLEDRILAEGVPHEGMgLAFYNTRRRADL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   81 AMQLGdtarnrwhHPYI-VCHRADLQSALLDACRNApGIEINLGAEMTDQRMTGNSITATIK-RENSVE-TVEAAYLVAC 157
Cdd:pfam01494  86 DFLTS--------PPRVtVYPQTELEPILVEHAEAR-GAQVRFGTEVLSLEQDGDGVTAVVRdRRDGEEyTVRAKYLVGC 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  158 DGVWSMQRAKAGYSKARFSGHIAWRTTLAADALPASflgAMPEHKAVSAWLGN--KAHFIAYPVKGGNF--FNFVAITG- 232
Cdd:pfam01494 157 DGGRSPVRKTLGIEFEGFEGVPFGSLDVLFDAPDLS---DPVERAFVHYLIYAphSRGFMVGPWRSAGRerYYVQVPWDe 233

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 672722140  233 -GENPGEVWSKTGDHAHLQSIyADWSKPVHEILAATRdWTYWPlfEMADAQFVGPdrtIFL-GDASHAVTPFAAQG 306
Cdd:pfam01494 234 eVEERPEEFTDEELKQRLRSI-VGIDLALVEILWKSI-WGVAS--RVATRYRKGR---VFLaGDAAHIHPPTGGQG 302
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
5-169 1.48e-14

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 73.46  E-value: 1.48e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   5 AGVAGLSAALELAARGWRVQIFEKAQELSE--VGAGLQlaPNAMRHLERLGVADRLSGTgVTPKALYLMDGRKARpllam 82
Cdd:COG0644    1 AGPAGSAAARRLARAGLSVLLLEKGSFPGDkiCGGGLL--PRALEELEPLGLDEPLERP-VRGARFYSPGGKSVE----- 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  83 qlgdtaRNRWHHPYIVCHRADLQSALLDACRNApGIEINLGAEMTDQRMTGNSITATIKREnsvETVEAAYLVACDGVWS 162
Cdd:COG0644   73 ------LPPGRGGGYVVDRARFDRWLAEQAEEA-GAEVRTGTRVTDVLRDDGRVVVRTGDG---EEIRADYVVDADGARS 142


                 ....*..
gi 672722140 163 MQRAKAG 169
Cdd:COG0644  143 LLARKLG 149
PLN02927 PLN02927
antheraxanthin epoxidase/zeaxanthin epoxidase
 1-386 3.56e-13

antheraxanthin epoxidase/zeaxanthin epoxidase


Pssm-ID: 178515 [Multi-domain]  Cd Length: 668  Bit Score: 70.90  E-value: 3.56e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   1 MIAGAGVAGLSAALELAARGWRVQIFEKaqELSEV-GAG-----LQLAPNAMRHLERLG--VADRLSGTG-VTPKALY-L 70
Cdd:PLN02927  85 LVAGGGIGGLVFALAAKKKGFDVLVFEK--DLSAIrGEGkyrgpIQIQSNALAALEAIDidVAEQVMEAGcITGDRINgL 162

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  71 MDGRKARPLLAMQLGDTARNRWHHPYIVCHRADLQSALL-----DACRNApgieinlgAEMTDQRMTGNSITATIkrENS 145
Cdd:PLN02927 163 VDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILAravgeDVIRNE--------SNVVDFEDSGDKVTVVL--ENG 232

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 146 vETVEAAYLVACDGVWSMQRAKA-GYSKARFSGHIAWrtTLAADALPASFlgampEHKAVSAWLGNKAHFIAYPVKGGNF 224
Cdd:PLN02927 233 -QRYEGDLLVGADGIWSKVRNNLfGRSEATYSGYTCY--TGIADFIPADI-----ESVGYRVFLGHKQYFVSSDVGGGKM 304

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 225 ----FNFVAITGGENPgevwskTGDHAHLQSIYADWSKPVHEILAATRDWTYW--PLFEMADAQFVGPDRTIFLGDASHA 298
Cdd:PLN02927 305 qwyaFHEEPAGGADAP------NGMKKRLFEIFDGWCDNVLDLLHATEEDAILrrDIYDRSPGFTWGKGRVTLLGDSIHA 378

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 299 VTPFAAQGAAMAIEDA-----------AALAQALDSDDQAAGLKRFDSVRKERIAAVAKRGQLNRF------AYHATGIF 361
Cdd:PLN02927 379 MQPNMGQGGCMAIEDSfqlaleldeawKQSVETNTPVDVVSSLKRYEESRRLRVAIIHAMARMAAImastykAYLGVGLG 458

                        410       420       430
                 ....*....|....*....|....*....|....*
gi 672722140 362 ALGRNMLFAVRSP----ETFLKD------LDWLYG 386
Cdd:PLN02927 459 PLSFLTKFRVPHPgrvgGRFFVDiamplmLDWVLG 493
PRK07236 PRK07236
hypothetical protein; Provisional
 2-376 4.05e-13

hypothetical protein; Provisional


Pssm-ID: 235980 [Multi-domain]  Cd Length: 386  Bit Score: 69.95  E-value: 4.05e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   2 IAGAGVAGLSAALELAARGWRVQIFEKAQ-ELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYL-MDGRKARPL 79
Cdd:PRK07236  11 VIGGSLGGLFAALLLRRAGWDVDVFERSPtELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLdRDGRVVQRR 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  80 LAMQLgDTARNRwhhpyivchradLQSALLDAcrnAPGIEINLGAEMTDQRMTGNSITATIKrenSVETVEAAYLVACDG 159
Cdd:PRK07236  91 PMPQT-QTSWNV------------LYRALRAA---FPAERYHLGETLVGFEQDGDRVTARFA---DGRRETADLLVGADG 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 160 VWSMQRAK-AGYSKARFSGHIAWRTTLAADALPASFLGAMPEHKAVSawLGNKAHFIAYPVKGGN--------FFNFV-- 228
Cdd:PRK07236 152 GRSTVRAQlLPDVRPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQ--LGPGSHILGYPVPGEDgstepgkrRYNWVwy 229

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 229 -AITGGE--------NPGEVWS--------KTGDHAHLQSIYADWSKPV-HEILAATRDWTYWPLFEMADAQFVgPDRTI 290
Cdd:PRK07236 230 rNAPAGEeldelltdRDGTRRPfsvppgalRDDVLAELRDDAAELLAPVfAELVEATAQPFVQAIFDLEVPRMA-FGRVA 308

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 291 FLGDASHAVTPFAAQGAAMAIEDAAALAQ--ALDSDDQAAGLKRFDSVRKERIAAVAKRGQlnrfayhatgifALGRNML 368
Cdd:PRK07236 309 LLGDAAFVARPHTAAGVAKAAADAVALAEalAAAAGDIDAALAAWEAERLAVGAAIVARGR------------RLGARLQ 376


                 ....*...
gi 672722140 369 FAVRSPET 376
Cdd:PRK07236 377 AQGRDPPE 384
Ubi-OHases TIGR01988
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; This model represents a ...
 2-306 9.53e-12

Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]


Pssm-ID: 273913 [Multi-domain]  Cd Length: 385  Bit Score: 66.07  E-value: 9.53e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140    2 IAGAGVAGLSAALELAARGWRVQIFEKAQELSEVGAGLQ-----LAPNAMRHLERLGVADRLSGTGVTP-KALYLMDGR- 74
Cdd:TIGR01988   4 IVGGGMVGLALALALARSGLKVALIEATPLPAPADPGFDnrvsaLSAASIRLLEKLGVWDKIEPARAQPiRDIHVSDGGs 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   75 ------KARPLLAMQLGdtarnrwhhpYIVCHRaDLQSALLDACRNAPGIEINLGAEMTDQRMTGNSitATIKRENSvET 148
Cdd:TIGR01988  84 fgalrfDADEIGLEALG----------YVVENR-VLQQALWERLQELPNVTLLCPARVVELPRHSDH--VELTLDDG-QQ 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  149 VEAAYLVACDGVWSMQRAKAGyskARFSGHIAWRTTLAAdalpasFLGAMPEHKAVsAWlgnkAHF-----IAY-PVKGg 222
Cdd:TIGR01988 150 LRARLLVGADGANSKVRQLAG---IPTTGWDYGQSAVVA------NVKHERPHQGT-AW----ERFtptgpLALlPLPD- 214

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  223 nffNFVAItggenpgeVWSKTGDHAH-LQSIyadwskPVHEILAATR---DWTY-----------WPLFEMADAQFVGPd 287
Cdd:TIGR01988 215 ---NRSSL--------VWTLPPEEAErLLAL------SDEEFLAELQrafGSRLgaitlvgerhaFPLSLTHAKRYVAP- 276

                         330
                  ....*....|....*....
gi 672722140  288 RTIFLGDASHAVTPFAAQG 306
Cdd:TIGR01988 277 RLALIGDAAHTIHPLAGQG 295
PRK06847 PRK06847
hypothetical protein; Provisional
 2-306 1.41e-11

hypothetical protein; Provisional


Pssm-ID: 235874 [Multi-domain]  Cd Length: 375  Bit Score: 65.28  E-value: 1.41e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   2 IAGAGVAGLSAALELAARGWRVQIFEKAQELSEVGAGLQLAPNAMRHLERLGVADRL--SGTGVTPKALYLMDGRKARPL 79
Cdd:PRK06847   9 IVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECleAGFGFDGVDLFDPDGTLLAEL 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  80 LAMQLGDT---ARNRwhhpyIVchRADLQSALLDACRNApGIEINLGAEMTDQRMTGNSITATIkreNSVETVEAAYLVA 156
Cdd:PRK06847  89 PTPRLAGDdlpGGGG-----IM--RPALARILADAARAA-GADVRLGTTVTAIEQDDDGVTVTF---SDGTTGRYDLVVG 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 157 CDGVWSMQRAKA--GYSKARFSGHIAWRTTLaadALPASFLGAMpehkavsAWLGNKAHFIAYPVKGGNFFNFVAitgge 234
Cdd:PRK06847 158 ADGLYSKVRSLVfpDEPEPEYTGQGVWRAVL---PRPAEVDRSL-------MYLGPTTKAGVVPLSEDLMYLFVT----- 222

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 235 npgevwSKTGDHAHLQSiyADWSKPVHEILAATRDwtywPLFEMADAQFVGPD-------------------RTIFLGDA 295
Cdd:PRK06847 223 ------EPRPDNPRIEP--DTLAALLRELLAPFGG----PVLQELREQITDDAqvvyrpletllvpapwhrgRVVLIGDA 290

                        330
                 ....*....|.
gi 672722140 296 SHAVTPFAAQG 306
Cdd:PRK06847 291 AHATTPHLAQG 301
mhpA PRK06183
bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;
2-169 2.38e-11

bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;


Pssm-ID: 235727 [Multi-domain]  Cd Length: 500  Bit Score: 64.93  E-value: 2.38e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   2 IAGAGVAGLSAALELAARGWRVQIFEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRkARPLLA 81
Cdd:PRK06183  15 IVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAK-GRCLAE 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  82 MQLGDTARNRWHHPYIvCHRADLQSALLDACRNAPGIEINLGAEMTDQRMTGNSITATIK-RENSVETVEAAYLVACDGV 160
Cdd:PRK06183  94 IARPSTGEFGWPRRNA-FHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTdADGQRETVRARYVVGCDGA 172


                 ....*....
gi 672722140 161 WSMQRAKAG 169
Cdd:PRK06183 173 NSFVRRTLG 181
PRK06184 PRK06184
hypothetical protein; Provisional
 1-169 1.04e-10

hypothetical protein; Provisional


Pssm-ID: 235728 [Multi-domain]  Cd Length: 502  Bit Score: 63.08  E-value: 1.04e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   1 MIAGAGVAGLSAALELAARGWRVQIFEKAQEL--SEVGAGLQlaPNAMRHLERLGVADRLSGTGVT--PKALYLMDGRKA 76
Cdd:PRK06184   7 LIVGAGPTGLTLAIELARRGVSFRLIEKAPEPfpGSRGKGIQ--PRTQEVFDDLGVLDRVVAAGGLypPMRIYRDDGSVA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  77 RPLLAMQLGDTARNRWHHPYIVCH---RADLQSALLDAcrnapGIEINLGAEMTDQRMTGNSITATIKRENSVETVEAAY 153
Cdd:PRK06184  85 ESDMFAHLEPTPDEPYPLPLMVPQwrtERILRERLAEL-----GHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARY 159

                        170
                 ....*....|....*.
gi 672722140 154 LVACDGVWSMQRAKAG 169
Cdd:PRK06184 160 LVGADGGRSFVRKALG 175
PRK07333 PRK07333
ubiquinone biosynthesis hydroxylase;
1-169 4.04e-10

ubiquinone biosynthesis hydroxylase;


Pssm-ID: 180935 [Multi-domain]  Cd Length: 403  Bit Score: 61.15  E-value: 4.04e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   1 MIAGAGVAGLSAALEL--AARGWRVQIFEKAQEL--SEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGR-- 74
Cdd:PRK07333   5 VIAGGGYVGLALAVALkqAAPHLPVTVVDAAPAGawSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSRts 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  75 -KARPLLAMQLGDTARNRwhhP--YIVCHRAdLQSALLDACRNApGIEINLGAEMTDQRMTGNSITATIKREnsvETVEA 151
Cdd:PRK07333  85 dPVRPVFLTFEGEVEPGE---PfaHMVENRV-LINALRKRAEAL-GIDLREATSVTDFETRDEGVTVTLSDG---SVLEA 156

                        170
                 ....*....|....*...
gi 672722140 152 AYLVACDGVWSMQRAKAG 169
Cdd:PRK07333 157 RLLVAADGARSKLRELAG 174
PRK06126 PRK06126
hypothetical protein; Provisional
 2-177 4.57e-10

hypothetical protein; Provisional


Pssm-ID: 235704 [Multi-domain]  Cd Length: 545  Bit Score: 61.16  E-value: 4.57e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   2 IAGAGVAGLSAALELAARGWRVQIFEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGV-----------TPKALYL 70
Cdd:PRK06126  12 IVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLpvdyptdiayfTRLTGYE 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  71 MdGRKARP--LLAMQLGDTARNRWHHPYIVcHRAD---LQSALLDACRNAPGIEINLGAEMTDQRMTGNSITATIKRENS 145
Cdd:PRK06126  92 L-ARFRLPsaREAITPVGGPDGSWPSPELP-HRIPqkyLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDG 169

                        170       180       190
                 ....*....|....*....|....*....|....
gi 672722140 146 VE--TVEAAYLVACDGVWSMQRAKAGyskARFSG 177
Cdd:PRK06126 170 GEslTIRADYLVGCDGARSAVRRSLG---ISYEG 200
PRK08132 PRK08132
FAD-dependent oxidoreductase; Provisional
 2-179 2.87e-08

FAD-dependent oxidoreductase; Provisional


Pssm-ID: 236158 [Multi-domain]  Cd Length: 547  Bit Score: 55.64  E-value: 2.87e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   2 IAGAGVAGLSAALELAARGWRVQIFEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKAlylmdGR---KARP 78
Cdd:PRK08132  28 VVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNV-----GKvflRDEE 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  79 LLAMQLGDTARNRWhHPYIVCHRADLQSALLDACRNAPGIEINLGAEMTDQRMTGNSITATIKRENSVETVEAAYLVACD 158
Cdd:PRK08132 103 VYRFDLLPEPGHRR-PAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACD 181

                        170       180
                 ....*....|....*....|.
gi 672722140 159 GVWSMQRAKAGyskARFSGHI 179
Cdd:PRK08132 182 GARSPLREMLG---LEFEGRT 199
PRK07494 PRK07494
UbiH/UbiF family hydroxylase;
2-306 1.62e-07

UbiH/UbiF family hydroxylase;


Pssm-ID: 181001 [Multi-domain]  Cd Length: 388  Bit Score: 52.98  E-value: 1.62e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   2 IAGAGVAGLSAALELAARGWRVQIFEKAQELSEVGAGLQLAPnAMRHLERLGVADRLSGtgvtpkalylmdgrKARPLLA 81
Cdd:PRK07494  12 VIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGP-SIRFLERLGLWARLAP--------------HAAPLQS 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  82 MQLGDtARNRWHHPYIVCHRAD---------------LQSALLDACRNAPGIEiNLGAEMTDQRMTGNSITATIKrenSV 146
Cdd:PRK07494  77 MRIVD-ATGRLIRAPEVRFRAAeigedafgynipnwlLNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLA---DG 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 147 ETVEAAYLVACDGVWSMQRAKAGyskarfsghIAWRTT-LAADALPASFLGAMPeHKAVSawlgNKAHfiaypVKGGNFf 225
Cdd:PRK07494 152 TTLSARLVVGADGRNSPVREAAG---------IGVRTWsYPQKALVLNFTHSRP-HQNVS----TEFH-----TEGGPF- 211

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 226 NFVAItggenPGE----VWSKTGDHA-----------------HLQSIYAdwskPVHeiLAATRdwTYWPLFEMADAQFV 284
Cdd:PRK07494 212 TQVPL-----PGRrsslVWVVRPAEAerllalsdaalsaaieeRMQSMLG----KLT--LEPGR--QAWPLSGQVAHRFA 278

                        330       340
                 ....*....|....*....|..
gi 672722140 285 GPdRTIFLGDASHAVTPFAAQG 306
Cdd:PRK07494 279 AG-RTALVGEAAHVFPPIGAQG 299
PRK06185 PRK06185
FAD-dependent oxidoreductase;
2-176 1.87e-07

FAD-dependent oxidoreductase;


Pssm-ID: 235729 [Multi-domain]  Cd Length: 407  Bit Score: 52.55  E-value: 1.87e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   2 IAGAGVAGLSAALELAARGWRVQIFEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVT--PKALYLMDGRKARpl 79
Cdd:PRK06185  11 IVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQkvRTLRFEIGGRTVT-- 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  80 lamqLGDTARNRWHHPYIvchrADL-QSALLDACRNA----PGIEINLGAEMTDQRMTGNSIT-ATIKRENSVETVEAAY 153
Cdd:PRK06185  89 ----LADFSRLPTPYPYI----AMMpQWDFLDFLAEEasayPNFTLRMGAEVTGLIEEGGRVTgVRARTPDGPGEIRADL 160

                        170       180
                 ....*....|....*....|...
gi 672722140 154 LVACDGVWSMQRAKAGYSKARFS 176
Cdd:PRK06185 161 VVGADGRHSRVRALAGLEVREFG 183
PRK08244 PRK08244
monooxygenase;
1-189 1.26e-06

monooxygenase;


Pssm-ID: 236199 [Multi-domain]  Cd Length: 493  Bit Score: 50.13  E-value: 1.26e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   1 MIAGAGVAGLSAALELAARGWRVQIFEKAQELSEVGAGLQLAPNAMRHLERLGVADRL--SGTGVTPKALYLMDGRkarp 78
Cdd:PRK08244   6 IIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFleKGRKLPSGHFAGLDTR---- 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  79 lLAMQLGDTArnrwhHPY-IVCHRADLQSALLDACRNApGIEINLGAEMTDQRMTGNSITATIKRENSVETVEAAYLVAC 157
Cdd:PRK08244  82 -LDFSALDTS-----SNYtLFLPQAETEKVLEEHARSL-GVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGA 154

                        170       180       190
                 ....*....|....*....|....*....|..
gi 672722140 158 DGVWSMQRAKAGYSkarFSGHIAWRTTLAADA 189
Cdd:PRK08244 155 DGAGSIVRKQAGIA---FPGTDATFTAMLGDV 183
COG3349 COG3349
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ...
 2-61 1.58e-06

Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];


Pssm-ID: 442577 [Multi-domain]  Cd Length: 445  Bit Score: 49.85  E-value: 1.58e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 672722140   2 IAGAGVAGLSAALELAARGWRVQIFEKAQEL---------SEVG----AGLQLAPNAMRH----LERLGVADRLSGT 61
Cdd:COG3349    8 VVGGGLAGLAAAVELAEAGFRVTLLEARPRLggrarsfpdPDTGlpidNGQHVLLGCYRNtldlLRRIGAADNLVGP 84
PRK09126 PRK09126
FAD-dependent hydroxylase;
2-169 9.71e-06

FAD-dependent hydroxylase;


Pssm-ID: 236385 [Multi-domain]  Cd Length: 392  Bit Score: 47.24  E-value: 9.71e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   2 IAGAGVAGLSAALELAARGWRVQIFEK--AQELSEV---GAGLQLAPNAMRHLERLGVADRLSGTGVTP-KALYLMDGrk 75
Cdd:PRK09126   8 VVGAGPAGLSFARSLAGSGLKVTLIERqpLAALADPafdGREIALTHASREILQRLGAWDRIPEDEISPlRDAKVLNG-- 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  76 aRPLLAMQLGDTARNRWHHPYIVCHRAdLQSALLDACRNAPGIEINLGAEMTDQRMTGNSITATIkreNSVETVEAAYLV 155
Cdd:PRK09126  86 -RSPFALTFDARGRGADALGYLVPNHL-IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTL---ANGRRLTARLLV 160

                        170
                 ....*....|....
gi 672722140 156 ACDGVWSMQRAKAG 169
Cdd:PRK09126 161 AADSRFSATRRQLG 174
mnmC PRK01747
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent ...
 2-64 1.16e-05

bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;


Pssm-ID: 234978 [Multi-domain]  Cd Length: 662  Bit Score: 47.53  E-value: 1.16e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   2 IAGAGVAGLSAALELAARGWRVQIFEK----AQE-------------------LSEV-GAGLQLAPNAMRHLERLGVADR 57
Cdd:PRK01747 265 IIGGGIAGAALALALARRGWQVTLYEAdeapAQGasgnrqgalypllskddnaLSRFfRAAFLFARRFYDALPAAGVAFD 344


                 ....*..
gi 672722140  58 LSGTGVT 64
Cdd:PRK01747 345 HDWCGVL 351
PRK07233 PRK07233
hypothetical protein; Provisional
 1-32 2.70e-05

hypothetical protein; Provisional


Pssm-ID: 235977 [Multi-domain]  Cd Length: 434  Bit Score: 46.03  E-value: 2.70e-05
                         10        20        30
                 ....*....|....*....|....*....|....
gi 672722140   1 MIA--GAGVAGLSAALELAARGWRVQIFEKAQEL 32
Cdd:PRK07233   1 KIAivGGGIAGLAAAYRLAKRGHEVTVFEADDQL 34
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
2-77 2.81e-05

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 46.07  E-value: 2.81e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   2 IAGAGVAGLSAALELAARGWRVQIFEkAQE------LSEVGAGLQLAPN-----------AMRHL-ERLGVADRlSGTGV 63
Cdd:COG1231   12 IVGAGLAGLAAARELRKAGLDVTVLE-ARDrvggrvWTLRFGDDGLYAElgamrippshtNLLALaRELGLPLE-PFPNE 89

                         90
                 ....*....|....
gi 672722140  64 TPKALYLMDGRKAR 77
Cdd:COG1231   90 NGNALLYLGGKRVR 103
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
2-162 3.00e-05

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 45.67  E-value: 3.00e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   2 IAGAGVAGLSAALELAARGWRVQIFEK---AQELSEVGAGL--------------QLAPNAMRHLERL----GVADRLSG 60
Cdd:COG0665    7 VIGGGIAGLSTAYHLARRGLDVTVLERgrpGSGASGRNAGQlrpglaaladralvRLAREALDLWRELaaelGIDCDFRR 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  61 TGVtpkaLYLmdGRKARPLLAMQLGDTARNRWHHPYIVCHRADLQS-----------------------------ALLDA 111
Cdd:COG0665   87 TGV----LYL--ARTEAELAALRAEAEALRALGLPVELLDAAELRErepglgspdyagglydpddghvdpaklvrALARA 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 672722140 112 CRNApGIEINLGAEMTDQRMTGNSITAtikrensVET----VEAAYLVACDGVWS 162
Cdd:COG0665  161 ARAA-GVRIREGTPVTGLEREGGRVTG-------VRTergtVRADAVVLAAGAWS 207
HemY COG1232
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ...
 2-74 3.48e-05

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440845 [Multi-domain]  Cd Length: 443  Bit Score: 45.59  E-value: 3.48e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   2 IAGAGVAGLSAALELAARGWRVQIFEKAQEL-----SEVGAGLQL----------APNAMRHLERLGVADRLSGTGvTPK 66
Cdd:COG1232    6 VIGGGIAGLTAAYRLAKAGHEVTVLEASDRVgglirTVEVDGFRIdrgphsfltrDPEVLELLRELGLGDELVWPN-TRK 84


                 ....*...
gi 672722140  67 ALYLMDGR 74
Cdd:COG1232   85 SYIYYGGK 92
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 2-58 3.83e-05

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 45.61  E-value: 3.83e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 672722140   2 IAGAGVAGLSAALELAARGWRVQIFEKAQEL-------------SEVGAGLQLAPNAMRHL-ERLGVADRL 58
Cdd:COG1233    8 VIGAGIGGLAAAALLARAGYRVTVLEKNDTPggrartferpgfrFDVGPSVLTMPGVLERLfRELGLEDYL 78
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 2-34 5.71e-05

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 44.70  E-value: 5.71e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 672722140    2 IAGAGVAGLSAALELAARGWRVQIFEKAQELSE 34
Cdd:pfam01266   4 VIGGGIVGLSTAYELARRGLSVTLLERGDDPGS 36
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
1-32 1.77e-04

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 43.70  E-value: 1.77e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 672722140   1 MIAGAGVAGLSAALELAARGWRVQIFEKAQEL 32
Cdd:COG1148  144 LVIGGGIAGMTAALELAEQGYEVYLVEKEPEL 175
PRK08294 PRK08294
phenol 2-monooxygenase; Provisional
 1-181 1.94e-04

phenol 2-monooxygenase; Provisional


Pssm-ID: 236223 [Multi-domain]  Cd Length: 634  Bit Score: 43.44  E-value: 1.94e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   1 MIAGAGVAGLSAALELAA-RGWRVQIFEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTG--VTPKALYLMDG---- 73
Cdd:PRK08294  36 LIVGCGPAGLTLAAQLSAfPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAywINETAFWKPDPadps 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  74 ---RKARPLlamqlgDTARNRWHHPYIVCHRADLQSALLDACRNAPG-IEINLGAEMTDQRMTGNS---ITATIKR---- 142
Cdd:PRK08294 116 tivRTGRVQ------DTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTrLEPDYGREFVDLEVDEEGeypVTVTLRRtdge 189

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 672722140 143 -ENSVETVEAAYLVACDGVWSMQRAKAGYSKARFSGHIAW 181
Cdd:PRK08294 190 hEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAW 229
COG3380 COG3380
Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];
2-29 2.50e-04

Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];


Pssm-ID: 442607 [Multi-domain]  Cd Length: 331  Bit Score: 42.56  E-value: 2.50e-04
                         10        20
                 ....*....|....*....|....*...
gi 672722140   2 IAGAGVAGLSAALELAARGWRVQIFEKA 29
Cdd:COG3380    8 IIGAGIAGLAAARALQDAGHEVTVFEKS 35
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
2-33 8.89e-04

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 37.51  E-value: 8.89e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 672722140    2 IAGAGVAGLSAALELAARGWRVQIFEKAQELS 33
Cdd:pfam13450   1 IVGAGLAGLVAAALLAKRGFRVLVLEKRDRLG 32
PRK07208 PRK07208
hypothetical protein; Provisional
 2-36 1.83e-03

hypothetical protein; Provisional


Pssm-ID: 235967 [Multi-domain]  Cd Length: 479  Bit Score: 40.26  E-value: 1.83e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 672722140   2 IAGAGVAGLSAALELAARGWRVQIFEKAqelSEVG 36
Cdd:PRK07208   9 IIGAGPAGLTAAYELLKRGYPVTVLEAD---PVVG 40
FAD_binding_2 pfam00890
FAD binding domain; This family includes members that bind FAD. This family includes the ...
 2-33 2.73e-03

FAD binding domain; This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.


Pssm-ID: 395718 [Multi-domain]  Cd Length: 398  Bit Score: 39.58  E-value: 2.73e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 672722140    2 IAGAGVAGLSAALELAARGWRVQIFEKAQELS 33
Cdd:pfam00890   4 VIGGGLAGLAAALAAAEAGLKVAVVEKGQPFG 35
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
 2-32 3.00e-03

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 39.47  E-value: 3.00e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 672722140   2 IAGAGVAGLSAALELAARGWRVQIFEKAQEL 32
Cdd:PRK12771 142 VIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172
PRK11749 PRK11749
dihydropyrimidine dehydrogenase subunit A; Provisional
 2-28 3.32e-03

dihydropyrimidine dehydrogenase subunit A; Provisional


Pssm-ID: 236967 [Multi-domain]  Cd Length: 457  Bit Score: 39.39  E-value: 3.32e-03
                         10        20
                 ....*....|....*....|....*..
gi 672722140   2 IAGAGVAGLSAALELAARGWRVQIFEK 28
Cdd:PRK11749 145 VIGAGPAGLTAAHRLARKGYDVTIFEA 171
YhiN COG2081
Predicted flavoprotein YhiN [General function prediction only];
2-29 5.49e-03

Predicted flavoprotein YhiN [General function prediction only];


Pssm-ID: 441684 [Multi-domain]  Cd Length: 402  Bit Score: 38.49  E-value: 5.49e-03
                         10        20
                 ....*....|....*....|....*...
gi 672722140   2 IAGAGVAGLSAALELAARGWRVQIFEKA 29
Cdd:COG2081    2 VIGAGAAGLMAAITAAERGARVLLLEKN 29
SdhA COG1053
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ...
 2-29 5.53e-03

Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 440673 [Multi-domain]  Cd Length: 443  Bit Score: 38.66  E-value: 5.53e-03
                         10        20
                 ....*....|....*....|....*...
gi 672722140   2 IAGAGVAGLSAALELAARGWRVQIFEKA 29
Cdd:COG1053    8 VVGSGGAGLRAALEAAEAGLKVLVLEKV 35
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
 4-32 5.56e-03

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 38.58  E-value: 5.56e-03
                         10        20
                 ....*....|....*....|....*....
gi 672722140   4 GAGVAGLSAALELAARGWRVQIFEKAQEL 32
Cdd:COG0493  128 GSGPAGLAAAYQLARAGHEVTVFEALDKP 156
NadB COG0029
Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the ...
 2-120 5.73e-03

Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the Pathway/BioSystem: NAD biosynthesis


Pssm-ID: 439800 [Multi-domain]  Cd Length: 521  Bit Score: 38.55  E-value: 5.73e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   2 IAGAGVAGLSAALELAARGwRVQIFEKAqELSE-----------------------------VGAGL----------QLA 42
Cdd:COG0029    9 VIGSGIAGLSAALKLAERG-RVTLLTKG-ELGEsntrwaqggiaavldpgdspelhiadtlaAGAGLcdpeavrvlvEEG 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  43 PNAMRHLERLGVA-DRLSgtgvtpkalylmDGRKARPLLAMQlgdtARNRwhhpyiVCHRAD-----LQSALLDACRNAP 116
Cdd:COG0029   87 PERIRELIELGVPfDRDE------------DGELALTREGGH----SRRR------ILHAGDatgreIERALLEAVRAHP 144


                 ....
gi 672722140 117 GIEI 120
Cdd:COG0029  145 NITV 148
PRK07608 PRK07608
UbiH/UbiF family hydroxylase;
2-306 7.80e-03

UbiH/UbiF family hydroxylase;


Pssm-ID: 181057 [Multi-domain]  Cd Length: 388  Bit Score: 38.01  E-value: 7.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140   2 IAGAGVAGLSAALELAARGWRVQIFEKAQELSEVGAGLQ-----LAPNAMRHLERLGVADRLSGTGVTPkaLYLM----- 71
Cdd:PRK07608  10 VVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDsrvyaISPSSQAFLERLGVWQALDAARLAP--VYDMrvfgd 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140  72 -DGR---KARPLLAMQLGDTARNRWhhpyivchradLQSALLDACRNAPGIEInLGAEMTDQRMTGNSITATIkreNSVE 147
Cdd:PRK07608  88 aHARlhfSAYQAGVPQLAWIVESSL-----------IERALWAALRFQPNLTW-FPARAQGLEVDPDAATLTL---ADGQ 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 148 TVEAAYLVACDGVWSMQRAKAGYSkarfsghiAWRTTLAADALPASFLGAMPEHKAVSAWLGNKAHFIAYPVKGgnffNF 227
Cdd:PRK07608 153 VLRADLVVGADGAHSWVRSQAGIK--------AERRPYRQTGVVANFKAERPHRGTAYQWFRDDGILALLPLPD----GH 220

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672722140 228 VAItggenpgeVWSKTGDHAH-LQSIYADW-----SKPVHEILAATRDWTY---WPLFEMADAQFVGPdRTIFLGDASHA 298
Cdd:PRK07608 221 VSM--------VWSARTAHADeLLALSPEAlaarvERASGGRLGRLECVTPaagFPLRLQRVDRLVAP-RVALVGDAAHL 291


                 ....*...
gi 672722140 299 VTPFAAQG 306
Cdd:PRK07608 292 IHPLAGQG 299
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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