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Conserved domains on  [gi|672799137|gb|AIK01975|]
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polyprotein, partial [Hepatitis E virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3729 super family cl25868
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ...
 1-82 1.76e-04

Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important.


The actual alignment was detected with superfamily member pfam12526:

Pssm-ID: 372164 [Multi-domain]  Cd Length: 115  Bit Score: 36.98  E-value: 1.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672799137    1 SGFSSDFSPPEAAFAAPAPDGGLPSG----TLSSASDVWVLPPPSEELVAASPPAASVSKPTSPPSPAISKPPACKPSPP 76
Cdd:pfam12526  23 SGFSSCFSPPESAHPDPPPPVGDPRPpvvdTPPPVSAVWVLPPPSEPAAPEPDLVPPVTGPAGPPSPLAPPAPAQKPPLP 102


                  ....*.
gi 672799137   77 PPARNR 82
Cdd:pfam12526 103 PPRPQR 108
 
Name Accession Description Interval E-value
DUF3729 pfam12526
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ...
 1-82 1.76e-04

Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important.


Pssm-ID: 372164 [Multi-domain]  Cd Length: 115  Bit Score: 36.98  E-value: 1.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672799137    1 SGFSSDFSPPEAAFAAPAPDGGLPSG----TLSSASDVWVLPPPSEELVAASPPAASVSKPTSPPSPAISKPPACKPSPP 76
Cdd:pfam12526  23 SGFSSCFSPPESAHPDPPPPVGDPRPpvvdTPPPVSAVWVLPPPSEPAAPEPDLVPPVTGPAGPPSPLAPPAPAQKPPLP 102


                  ....*.
gi 672799137   77 PPARNR 82
Cdd:pfam12526 103 PPRPQR 108
 
Name Accession Description Interval E-value
DUF3729 pfam12526
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ...
 1-82 1.76e-04

Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important.


Pssm-ID: 372164 [Multi-domain]  Cd Length: 115  Bit Score: 36.98  E-value: 1.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672799137    1 SGFSSDFSPPEAAFAAPAPDGGLPSG----TLSSASDVWVLPPPSEELVAASPPAASVSKPTSPPSPAISKPPACKPSPP 76
Cdd:pfam12526  23 SGFSSCFSPPESAHPDPPPPVGDPRPpvvdTPPPVSAVWVLPPPSEPAAPEPDLVPPVTGPAGPPSPLAPPAPAQKPPLP 102


                  ....*.
gi 672799137   77 PPARNR 82
Cdd:pfam12526 103 PPRPQR 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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