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Conserved domains on  [gi|699977103|gb|AIU45641|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Rattus norvegicus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475899)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-326 6.32e-152

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 430.81  E-value: 6.32e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103   1 MNPITLIIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQ 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  81 SGMWTLQQQTNNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQKIAPLSILYQFYQLLNPTITTILAIS 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 161 SVFVGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTLLNLTIYILLTVPMFITLMTNSATTINTLSLAWNKTPMI 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 241 LTMTSIILLSLGGLPPLTGFLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYTRLIYSMSLTMFPTNNNSKMISHHHQN 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320


                 ....*.
gi 699977103 321 PKHNFI 326
Cdd:MTH00105 321 KPMTLL 326
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-326 6.32e-152

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 430.81  E-value: 6.32e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103   1 MNPITLIIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQ 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  81 SGMWTLQQQTNNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQKIAPLSILYQFYQLLNPTITTILAIS 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 161 SVFVGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTLLNLTIYILLTVPMFITLMTNSATTINTLSLAWNKTPMI 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 241 LTMTSIILLSLGGLPPLTGFLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYTRLIYSMSLTMFPTNNNSKMISHHHQN 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320


                 ....*.
gi 699977103 321 PKHNFI 326
Cdd:MTH00105 321 KPMTLL 326
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 22-300 4.20e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 110.98  E-value: 4.20e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  22 SSSNLLLMWVGLEMSLLAIIPLLA-NKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSG-------MWTLQQQTNNM 93
Cdd:COG1007  120 SANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGslnlagiAAALAAGGANS 199

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  94 LLN-----MMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQKIAPLSILYQFYQLLNPTIT-------TILAISS 161
Cdd:COG1007  200 PLLllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGLAadwqlllAVLAVLS 279

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 162 VFVGAWGGLNQTQTRKIMAYSSIAHMGWM-TAILPYNPN---LTLLNLTIYILLTVPMF--ITLMTNSATTINTLS---- 231
Cdd:COG1007  280 MTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLgvsAALFYLLAYLFMNLGAFavILLLSRKGGEAEEIEdlag 359

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 699977103 232 LAWnKTPMILTMTSIILLSLGGLPPLTGFLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYTRLIYSM 300
Cdd:COG1007  360 LAR-RSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAM 427
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 6-300 1.34e-24

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 103.87  E-value: 1.34e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103    6 LIIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLA-NKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGMW 84
Cdd:TIGR01770 104 FYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSL 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103   85 TL----QQQTNNMLLN--------MMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQKIA--------PLSILYQ 144
Cdd:TIGR01770 184 NFedllLFLSNGMLNIsllllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifavflrlFLYILFG 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  145 FYQLLNPtITTILAISSVFVGAWGGLNQTQTRKIMAYSSIAHMGW-MTAILPYNPNL---TLLNLTIYILLTVPMFITLM 220
Cdd:TIGR01770 264 FSEAWQI-FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGikaVLFYIFIYALMSLGAFGVLS 342

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  221 T------NSATTINTLSLAWNKTPMILTMTSIILLSLGGLPPLTGFLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYT 294
Cdd:TIGR01770 343 LlrsykdEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYL 422


                  ....*.
gi 699977103  295 RLIYSM 300
Cdd:TIGR01770 423 RVVKVM 428
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-281 1.39e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.54  E-value: 1.39e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103   23 SSNLLLMWVGLEMSLLAIIPLLA-NKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSG-----------MWTLQQQT 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGtlsfdelskalTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103   91 NNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILL-TWQKIAPLSI-----LYQFYQLLNPTITTILAISSVFV 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  165 GAWGGLNQTQTRKIMAYSSIAHMGWMTAIL----PYNPNLTLLNLTIYILLTVPMF-----ITLMTNSATTINTLSLAWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 699977103  236 KTPMILTMTSIILLSLGGLPPLTGFLPKWAIISELLKNNCSTLSTL 281
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-326 6.32e-152

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 430.81  E-value: 6.32e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103   1 MNPITLIIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQ 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  81 SGMWTLQQQTNNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQKIAPLSILYQFYQLLNPTITTILAIS 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 161 SVFVGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTLLNLTIYILLTVPMFITLMTNSATTINTLSLAWNKTPMI 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 241 LTMTSIILLSLGGLPPLTGFLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYTRLIYSMSLTMFPTNNNSKMISHHHQN 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320


                 ....*.
gi 699977103 321 PKHNFI 326
Cdd:MTH00105 321 KPMTLL 326
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-313 6.21e-114

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 334.47  E-value: 6.21e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103   1 MNPITLIIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQ 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  81 SGMWTLQQQTNNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQKIAPLSILYQFyQLLNPTITTILAIS 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQI-APTNPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 161 SVFVGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTLLNLTIYILLTVPMFITLMTNSATTINTLSLAWNKTPMI 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 699977103 241 LTMTSIILLSLGGLPPLTGFLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYTRLIYSMSLTMFPTNNNSKM 313
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTT 312
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-323 1.85e-106

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 315.22  E-value: 1.85e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103   1 MNPITLIIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQ 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  81 SGMWTLQQQTNNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQKIAPLSILYQFYQLLNPTITTILAIS 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 161 SVFVGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTLLNLTIYILLTVPMFITLMTNSATTINTLSLAWNKTPMI 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 241 LTMTSIILLSLGGLPPLTGFLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYTRLIYSMSLTMFPTNNNSKMISHHHQN 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320


                 ...
gi 699977103 321 PKH 323
Cdd:MTH00112 321 KNT 323
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-322 7.29e-106

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 313.78  E-value: 7.29e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103   1 MNPITLIIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQ 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  81 SGMWTLQQQTNNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQKIAPLSILYQFYQLLNPTITTILAIS 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 161 SVFVGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTLLNLTIYILLTVPMFITLMTNSATTINTLSLAWNKTPMI 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 241 LTMTSIILLSLGGLPPLTGFLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYTRLIYSMSLTMFPTNNNSKMISHHHQN 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320


                 ..
gi 699977103 321 PK 322
Cdd:MTH00070 321 TN 322
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-312 3.36e-85

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 261.06  E-value: 3.36e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103   1 MNPITLIIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQ 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  81 SGMWTLQQQTNNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQKIAPLSILYQFYQLLNPTITTILAIS 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 161 SVFVGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTLLNLTIYILLTVPMFITLMTNSATTINTLSLAWNKTPMI 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 699977103 241 LTMTSIILLSLGGLPPLTGFLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYTRLIYSMSLTMFPTNNNSK 312
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMM 312
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-308 4.64e-77

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 240.22  E-value: 4.64e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103   1 MNPITLIIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQ 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  81 SGMWTLQQQTNNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQKIAPLSILYQFYQLLNPTITTILAIS 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 161 SVFVGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTLLNLTIYILLTVPMFITLMTNSATTINTLSLAWNKTPMI 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 699977103 241 LTMTSIILLSLGGLPPLTGFLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYTRLIYSMSLTMFPTN 308
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQH 308
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-326 7.24e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 174.63  E-value: 7.24e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103   1 MNPITLIIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQ 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  81 SGMwtlqqqTNNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQKIAPLSILYQFyqlLNPTITTILAIS 160
Cdd:MTH00160  82 LML------FNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 161 SVFVGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTLLNLTIYILLTVPMFITLMTNSATTINTLSLAWNKTPMI 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 241 LTMTSIILLSLGGLPPLTGFLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYTRLIYSMSLTMFPTNNNSKMISHHHQN 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFS 312


                 ....*.
gi 699977103 321 PKHNFI 326
Cdd:MTH00160 313 LILNFL 318
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 11-313 4.36e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 164.67  E-value: 4.36e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  11 FTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGMWtlqqqt 90
Cdd:MTH00144  11 FLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW------ 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  91 nnMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQKIAPLSILYQFYQLLNP-TITTILAISSVFVGAWGG 169
Cdd:MTH00144  85 --FSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 170 LNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTLLNLTIYILLTVPMFITLMTNSATTINTLSlawNKTPMILTMTSIILL 249
Cdd:MTH00144 163 LNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLG---SLKPSYKTGLSIISL 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 699977103 250 SLGGLPP--LTGFLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYTRLIYSMSLTMFPTNNNSKM 313
Cdd:MTH00144 240 LLSLGGLppFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSS 305
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 5-299 3.27e-42

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 149.54  E-value: 3.27e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103   5 TLIIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILnykqsgMW 84
Cdd:MTH00011   7 TMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MW 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  85 TLQQQTNNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQKIAPLSILYQFYQLLNPTITTILAISSVFV 164
Cdd:MTH00011  81 SFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 165 GAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTLLNLTIYILLTVPMFITLMTNSATTINTLSLAWNKTPMILTMT 244
Cdd:MTH00011 161 GGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSL 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 699977103 245 SIILLSLGGLPPLTGFLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYTRLIYS 299
Cdd:MTH00011 241 FIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN 295
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-315 3.30e-38

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 138.65  E-value: 3.30e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103   8 IIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYkqsgmwtLQ 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------SN 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  88 QQTNNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQKIAPLSILYQFYQllNPTITTILAISSVFVGAW 167
Cdd:MTH00197  75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 168 GGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTLLNLTIYILLTVPMFITLMTNSATTINTLSLAWNKTPMILTMTSII 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 699977103 248 LLSLGGLPPLTGFLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYTRLIYSMSLTMFPTNNNSKMIS 315
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKIN 300
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-300 2.34e-27

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 111.84  E-value: 2.34e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  14 LMGPVITMSSSNLLLMWVGLEMSLLAIIPLLA-NKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGMWTL------ 86
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFagiaka 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  87 --QQQTNNMLL----NMMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQKIAPLSILYQFYQLLNPTITT----- 155
Cdd:PRK05777 193 laDGSGNSLLLlfglVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLLVVAFGGLSEdwqqv 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 156 --ILAISSVFVGAWGGLNQTQTRKIMAYSSIAHMGWM-TAILPYNPN---LTLLNLTIYILLTVPMF--ITLM---TNSA 224
Cdd:PRK05777 273 laIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlVGLAAGTAEgysAVLFYLLAYLFMTLGAFgvISLLrrkGGEA 352

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 699977103 225 TTINTLS-LAWNKtPMILTMTSIILLSLGGLPPLTGFLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYTRLIYSM 300
Cdd:PRK05777 353 ESISDFAgLSKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVIKLM 428
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 22-300 4.20e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 110.98  E-value: 4.20e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  22 SSSNLLLMWVGLEMSLLAIIPLLA-NKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSG-------MWTLQQQTNNM 93
Cdd:COG1007  120 SANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGslnlagiAAALAAGGANS 199

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  94 LLN-----MMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQKIAPLSILYQFYQLLNPTIT-------TILAISS 161
Cdd:COG1007  200 PLLllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGLAadwqlllAVLAVLS 279

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 162 VFVGAWGGLNQTQTRKIMAYSSIAHMGWM-TAILPYNPN---LTLLNLTIYILLTVPMF--ITLMTNSATTINTLS---- 231
Cdd:COG1007  280 MTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLgvsAALFYLLAYLFMNLGAFavILLLSRKGGEAEEIEdlag 359

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 699977103 232 LAWnKTPMILTMTSIILLSLGGLPPLTGFLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYTRLIYSM 300
Cdd:COG1007  360 LAR-RSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAM 427
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 6-300 1.34e-24

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 103.87  E-value: 1.34e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103    6 LIIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLA-NKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGMW 84
Cdd:TIGR01770 104 FYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSL 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103   85 TL----QQQTNNMLLN--------MMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQKIA--------PLSILYQ 144
Cdd:TIGR01770 184 NFedllLFLSNGMLNIsllllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifavflrlFLYILFG 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  145 FYQLLNPtITTILAISSVFVGAWGGLNQTQTRKIMAYSSIAHMGW-MTAILPYNPNL---TLLNLTIYILLTVPMFITLM 220
Cdd:TIGR01770 264 FSEAWQI-FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGikaVLFYIFIYALMSLGAFGVLS 342

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  221 T------NSATTINTLSLAWNKTPMILTMTSIILLSLGGLPPLTGFLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYT 294
Cdd:TIGR01770 343 LlrsykdEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYL 422


                  ....*.
gi 699977103  295 RLIYSM 300
Cdd:TIGR01770 423 RVVKVM 428
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-281 1.39e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.54  E-value: 1.39e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103   23 SSNLLLMWVGLEMSLLAIIPLLA-NKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSG-----------MWTLQQQT 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGtlsfdelskalTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103   91 NNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILL-TWQKIAPLSI-----LYQFYQLLNPTITTILAISSVFV 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  165 GAWGGLNQTQTRKIMAYSSIAHMGWMTAIL----PYNPNLTLLNLTIYILLTVPMF-----ITLMTNSATTINTLSLAWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 699977103  236 KTPMILTMTSIILLSLGGLPPLTGFLPKWAIISELLKNNCSTLSTL 281
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 7-298 2.89e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 100.09  E-value: 2.89e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103   7 IIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKK-SPRSTEAATKYFLTQATASMIILLVIILNYKQSGMWT 85
Cdd:MTH00199 100 PILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVALKRdSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETS 179

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  86 LQQQTNNMLLN----MMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQKIAPLSILYQFYQLLNptITTILAISS 161
Cdd:MTH00199 180 IQGINSILTGDvgkiLITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLS 257

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 162 VFVGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPN----LTLLNLTIYILLTVPMFITLMTNSATT--INTLSLAWN 235
Cdd:MTH00199 258 IIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSFesiqASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSR 337

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 699977103 236 KTPMILTMTSIILLSLGGLPPLTGFLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYTRLIY 298
Cdd:MTH00199 338 KNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVVQ 400
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-297 8.25e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 97.79  E-value: 8.25e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  13 ILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLA-NKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGmwTLQQQTN 91
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAqNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTG--GLHLSYI 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  92 NMLLN---------------MMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQKIAPLSILYQFYqlLNPTITTI 156
Cdd:MTH00196  80 NLVLNsgqsfssvsvpigylLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIG--LNVNILLI 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 157 LAISSVFVGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNP----NLTLLNLTIYILLTVPMFITLMTNSATT--INTL 230
Cdd:MTH00196 158 GGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEF 237

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 699977103 231 SLAWNKTPMILTMTSIILLSLGGLPPLTGFLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYTRLI 297
Cdd:MTH00196 238 SGLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 10-301 1.37e-13

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 71.33  E-value: 1.37e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  10 YFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGMWTLQ-- 87
Cdd:COG0651  113 FLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMAdl 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  88 ----QQTNNMLLN----MMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLIL---LTwqKIAPLSILYQFYQLLNPTITT- 155
Cdd:COG0651  193 aarlAELDPGLLLaafaLLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLsglLT--KVGVYAILRVLTLLFGADPALf 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 156 ------ILAISSVFVGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNpNLTLLNLTIYILLTVPMFITLM--------- 220
Cdd:COG0651  271 lgtlllVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLG-TPLGLAGALFHLLNHALAKALLflaagaier 349

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 221 TNSATTINTLSLAWNKTPMILTMTSIILLSLGGLPPLTGFLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYTRLIYSM 300
Cdd:COG0651  350 ATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRA 429


                 .
gi 699977103 301 S 301
Cdd:COG0651  430 Q 430
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 23-192 3.67e-12

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 67.03  E-value: 3.67e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  23 SSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGMWT----------LQQQTNN 92
Cdd:COG1008  130 ALDLFLFYVFWELMLIPMYFLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTfdiaelaaapLPLTAQL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  93 MLLNMMLISLAMKLGLAPFHYWLPEV-----TQGIPLHIGLILltwqKIA-------PLSILYQFYQLLNPTITtILAIS 160
Cdd:COG1008  210 LLFLAFFIAFAVKVPMFPFHTWLPDAhveapTAGSVLLAGVLL----KMGgygllrfALPLFPEASAYFAPLLA-ALGVI 284

                        170       180       190
                 ....*....|....*....|....*....|..
gi 699977103 161 SVFVGAWGGLNQTQTRKIMAYSSIAHMGWMTA 192
Cdd:COG1008  285 GIIYGALVALAQTDLKRLIAYSSVSHMGFVLL 316
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 2-191 8.14e-12

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 66.12  E-value: 8.14e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103    2 NPITLIIIYFTILMGPVI-TMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQ 80
Cdd:TIGR01972 103 KRVKEFYALLLLLEAGVIgVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIYAAMKFFLYTLAGSLLMLLAILGLYFL 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103   81 SGM------WTLQQQTNNMLLNMM---LISLAMKLGLAPFHYWLPEV-----TQGIPLHIGLILltwqKIAPLSILYQFY 146
Cdd:TIGR01972 183 GGGtfdlleLLNLPLPFGVQTWLFlafFIAFAVKVPLFPLHTWLPDAhveapTAGSVILAGVLL----KMGTYGFLRFNL 258

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 699977103  147 QLLN------PTITTILAISSVFVGAWGGLNQTQTRKIMAYSSIAHMGWMT 191
Cdd:TIGR01972 259 PLFPdaslyfAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-190 1.63e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 65.12  E-value: 1.63e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103   5 TLIIIYFTILMGPVITmssSNLLLMWVGLEMSLLAIIPLLA-NKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGM 83
Cdd:PRK08376 125 TLILLLELGMLGMAIT---GDLFNFFVFLEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGT 201

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  84 WTLQQQTNNMLLNMMLI----------SLAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQKIAPLSILYQFYQLLNPTI 153
Cdd:PRK08376 202 LNMAYLAVKMSENPTVVakialalfiaGLAMKSGAVPVHMWLPDAYPAAPSSISAMLLVIKQAGLYALARVLFSIYGPAI 281

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 699977103 154 TT--------ILAISSVFVGAWGGLNQTQTRKIMAYSSIAHMGWM 190
Cdd:PRK08376 282 NLatvgwviiILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYM 326
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-190 3.91e-10

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 61.03  E-value: 3.91e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  15 MGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRST---------EAATKYFLTQATASMIILLVIILNYKQSG--- 82
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGneg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  83 ----MWTLQQQTNNMLLN-------MMLISLAMKLGLAPFHYWLPEVTQGIPLHiglillTWQKIAPLSILYQFYQLLNP 151
Cdd:MTH00198 279 mlgtILSATLETTNIELRqgslgylFITVAILFKLAAAPFHMWTPDVYEGAPTP------TTALIAIIPKFTVYILLTSL 352

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 699977103 152 TITTIL----AISSVFVGAWGGLNQTQTRKIMAYSSIAHMGWM 190
Cdd:MTH00198 353 VITSKLllsvAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFI 395
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 14-190 5.47e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 60.28  E-value: 5.47e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  14 LMGPVITmssSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGmwTLQ------ 87
Cdd:PRK08375 119 LLGALLT---ADLFNLFVFLEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTG--TLNmadlag 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  88 ----QQTNNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQKIAPLSILYQFY----------QLLNPTI 153
Cdd:PRK08375 194 alaeNPTVVTAFGFVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYftvfggdfrfALGLGWL 273

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 699977103 154 TTILAISSVFVGAWGGLNQTQTRKIMAYSSIAHMGWM 190
Cdd:PRK08375 274 LAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYI 310
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-300 3.42e-09

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 58.09  E-value: 3.42e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103   7 IIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLA-NKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGMWT 85
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGyTKKDVRSNEATMKYLLMGGASSSILVYGFSWLYGLSGGEI 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  86 LQQQTNNMLLNM--------------MLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQKIAPLSILYQFYQLLNP 151
Cdd:CHL00049 194 ELQEIVNGLINTqmynspgisialifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFY 273

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 152 TITT-------ILAISSVFVGAWGGLNQTQTRKIMAYSSIAHMGW-MTAILPYNPNLTLLNLTIYILLTVPM------FI 217
Cdd:CHL00049 274 FSSNewhllleILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYvIIGIIVGDSNDGYASMITYMLFYIFMnlgtfaCI 353

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 218 TLMTNSATTINTLSLA--WNKTPMILTMTSIILLSLGGLPPLTGFLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYTR 295
Cdd:CHL00049 354 VLFGLRTGTDNIRDYAglYTKDPFLALSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLK 433


                 ....*
gi 699977103 296 LIYSM 300
Cdd:CHL00049 434 IIKLL 438
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
23-190 6.66e-09

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 57.02  E-value: 6.66e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  23 SSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVII----------LNYKQSGMWTLQQQTNN 92
Cdd:PRK06473 126 AQDLLLFFLFYELELIPLYLLIAIWGGQRRGYAATKFLLYTAISGILILVSFLglvwlsgassFDYEPLRSHTLPLSTQL 205

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  93 MLLNMMLISLAMKLGLAPFHYWLP----EVTQGIPLHIGLILLTWQKIAPL----SILYQFYQLLNPTITTILAISSVFv 164
Cdd:PRK06473 206 LLLAPILVGFGIKIPLVPFHTWLPdahvEASTPVSVLLAGVLLKLGTYGLLrfgvGLFPEAWVYLAPWLATWAVVSVLY- 284

                        170       180
                 ....*....|....*....|....*.
gi 699977103 165 GAWGGLNQTQTRKIMAYSSIAHMGWM 190
Cdd:PRK06473 285 GASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
7-300 8.21e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 56.60  E-value: 8.21e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103   7 IIIYFTILMGPVITMSSSNLLLMWVGLEMslLAIIPLLAN---KKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGM 83
Cdd:PRK02504 113 AAILLTATLGGMFLSGATELVMIFISLET--LSIASYLLTgymKRDPRSNEAALKYLLIGAASSAIFLYGSSLLYGLSGG 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  84 WTLQQQTNNMLLN-----------MMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQKIAPLSILYQFYQLLNPT 152
Cdd:PRK02504 191 STQLSAIALALITspslglalalvFVIAGIAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPS 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 153 IT-------TILAISSVFVGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPN----LTLLNLTIYILLTVPMFITLMT 221
Cdd:PRK02504 271 FDeqwkllfTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVAGTEagyaSMVFYLLAYLFMNLGAFACVIL 350

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 222 NSATT----INTLSLAWNKTPMILTMTSIILLSLGGLPPLTGFLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYTRLI 297
Cdd:PRK02504 351 FSLRTgtdqISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRVI 430


                 ...
gi 699977103 298 YSM 300
Cdd:PRK02504 431 KMM 433
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-191 2.56e-08

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 55.32  E-value: 2.56e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  20 TMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNY---------KQSGM-WTL--- 86
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTILVYanaatvmgdGEMAIlWTEllk 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  87 -QQQTNNMLLNM----MLISLAMKLGLAPFHYWLPEVTQGIPLHI-----GLILltwqKIApLSILYQFYQLLNPTITT- 155
Cdd:PRK06458 204 hASLLDPTLMKLafvfLLIGFGTKVGLFPMHAWLPDAHSEAPSPVsallsGVLL----NVA-LYAVLRYYILIDAAIGSd 278

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 699977103 156 -------ILAISSVFVGAWGGLNQTQTRKIMAYSSIAHMGWMT 191
Cdd:PRK06458 279 fpgrlllIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIA 321
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 13-191 3.74e-08

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 54.82  E-value: 3.74e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  13 ILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVII----LNYKQSGMWTLQQ 88
Cdd:PRK05846 120 LEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGVWGGKNRIYAATKFFLYTLLGSLLMLVAIIylvvVYYNATGTFDIAD 199

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  89 -QTNNMLLNMM-------LISLAMKLGLAPFHYWLPEV-----TQGIPLHIGLILltwqKIAP---LSILYQFY----QL 148
Cdd:PRK05846 200 lLNLPLPPGVQywlflafFIAFAVKMPMFPLHTWLPDAhvqapTAGSVLLAGILL----KMGAyglLRFSLPLFpdasHE 275

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 699977103 149 LNPTITTiLAISSVFVGAWGGLNQTQTRKIMAYSSIAHMGWMT 191
Cdd:PRK05846 276 FAPIIIT-LGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVT 317
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
25-190 8.03e-07

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 50.48  E-value: 8.03e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  25 NLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVII----------LNYKQSGMWTLQQQTNNML 94
Cdd:PRK07363 128 NLLLFFLFYELELIPFYLLIAIWGGEKRGYASIKFLIYTAVSGLLVLAAFLgivwlsgstsFDYDAISTQNLSLNTQLIL 207

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  95 LNMMLISLAMKLGLAPFHYWLP----EVTQGIPLHIGLILL---TWQKIA-PLSILYQFYQLLNPTITTILAISSVFvGA 166
Cdd:PRK07363 208 LTGLLLGFGIKIPLVPLHTWLPdaytEASPAVAILLGGVLAklgTYGLLRfGLQLFPQTWSLVAPGLAIIGTISVIY-GA 286

                        170       180
                 ....*....|....*....|....
gi 699977103 167 WGGLNQTQTRKIMAYSSIAHMGWM 190
Cdd:PRK07363 287 LSAIAQKDIKRMVAYSSIGHMGYI 310
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 18-190 1.46e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 46.67  E-value: 1.46e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  18 VITMS--SSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNY----KQSGMWTLQQQ-- 89
Cdd:PRK08676 114 VITFAffSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAMIFAFIGLIFLFsltrQALGTGTLNWTel 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  90 -------TNNMLL---NMMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILL-TWQKIAPLSILyQFYQLLNPT------ 152
Cdd:PRK08676 194 aahasllSPSVLGasfLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSgTVLNIGIYGIL-RLSALLRQSgaaeqf 272

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 699977103 153 --ITTILAISSVFVGAWGGLNQTQTRKIMAYSSIAHMGWM 190
Cdd:PRK08676 273 snVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLM 312
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 8-188 5.60e-05

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 44.76  E-value: 5.60e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103   8 IIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSG---MW 84
Cdd:PRK08377 112 MLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGtlnMA 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  85 TLQQQTNNML-------LNMMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQKIAPL----SILYQFYQLLNPT- 152
Cdd:PRK08377 192 HIAQLAGTIDptvaqvgLALLIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLyamaRILYLMQNANGWSs 271

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 699977103 153 ---ITTILAISSVFVGAWGGLNQTQTRKIMAYSSIAHMG 188
Cdd:PRK08377 272 vlkLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVG 310
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 23-188 9.21e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 44.25  E-value: 9.21e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  23 SSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILL----------VIILNYKQSGMWTLQQQTNN 92
Cdd:PRK12561 106 AQDLLLFFLMWELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVaglalalsgdTFTFDLAELGAKSYPLALEL 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  93 MLLNMMLISLAMKLGLAPFHYWLPE-----------VTQGIPLHIG---LILLTWQkiaplsILYQFYQLLNPtITTILA 158
Cdd:PRK12561 186 LLYAGFLIAFGVKLPIFPLHTWLPDahgeasapvsmILAGVLLKMGgyaLIRFNVQ------MLPDAHVYFAP-ALAILG 258

                        170       180       190
                 ....*....|....*....|....*....|
gi 699977103 159 ISSVFVGAWGGLNQTQTRKIMAYSSIAHMG 188
Cdd:PRK12561 259 VVNIIYGALNAFAQDNVKRRLAYSSVSHMG 288
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 54-211 1.41e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 43.37  E-value: 1.41e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  54 EAATKYFLTQATASMIILLVIILNYKQSGM----------WTLQQQTNNMLLNMMLISLAMKLGLAPFHYWLPE------ 117
Cdd:MTH00226 182 QAAYYFFFYTLIGSVLMLLCLFSLYNIHGTtdyltlascsHVVSEQTQKWIFLGIFLAMAVKIPIFPFHIWLPKahveap 261

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 118 -----VTQGIPLHIG---LILLTWqKIAPLSIlyqfyQLLNPTITTiLAISSVFVGAWGGLNQTQTRKIMAYSSIAHMGw 189
Cdd:MTH00226 262 vagsvLLAGILLKLGgygLVRLSW-PILPLGA-----QNLAPAVIA-MGIVGIVYGSFATCRQIDVKRLVAYSSVAHMG- 333

                        170       180
                 ....*....|....*....|..
gi 699977103 190 MTAILPYNPNLTLLNLTIYILL 211
Cdd:MTH00226 334 LVSITLVTHDIIGLTGSIFIML 355
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 10-189 1.97e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 43.16  E-value: 1.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  10 YFTILM---GPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGMWTL 86
Cdd:PRK02546 118 YFLMLAmygGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGGKKRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTF 197

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  87 QQQT----------NNMLLNMMLISLAMKLGLAPFHYWLP----EVTQgiPLHIGL--ILLTWQKIAPL----SILYQFY 146
Cdd:PRK02546 198 DMTAlaakdfglgfQLLCYAGLLIAYGVKLPIVPLHTWLPdahgEATA--PVHMLLagILLKMGGYALLrmnaGMLPDAH 275

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 699977103 147 QLLNPtITTILAISSVFVGAWGGLNQTQTRKIMAYSSIAHMGW 189
Cdd:PRK02546 276 AQFAP-LLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGF 317
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 23-194 4.06e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 42.06  E-value: 4.06e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  23 SSNLLLMWVGLEMSLLA---IIPLLANKKSPRSteAATKYFLTQATASMIILLVIILNYKQSGMWTL-------QQQTNN 92
Cdd:COG1009  130 SDNLLLLFVFWELVGLCsylLIGFWYEKPSARR--AARKAFLVTRVGDLGLLLGILLLGAIAGTLNFsellaaaPTILSS 207

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  93 MLLNMMLISLAM----KLGLAPFHYWLPE-----------------VTQGIPLhiglilltwqkIAPLSILYQFYQLLNP 151
Cdd:COG1009  208 PLLTLILLLLLLgafgKSAQFPLHFWLPDamegptpvsallhaatmVKAGVYL-----------LARLSPLFALSPVWLT 276

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 699977103 152 TITTILAISSVFvGAWGGLNQTQTRKIMAYSSIAHMGWMTAIL 194
Cdd:COG1009  277 VVAIIGAITALF-AALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-326 9.84e-04

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 36.85  E-value: 9.84e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 699977103  291 FFYTRLIYSMSLTMFPTNNNSKMISHHHQNPKHNFI 326
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLL 36
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-300 1.10e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 40.72  E-value: 1.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  29 MWVGLEMSLLAIIPLLA-NKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSG---MWTLQQQTNNMLLNMML----- 99
Cdd:PRK12667 138 LFVMLEVLSISAYGLVAyYRDRGDAVEAAIKYALIGAVGTTLYFLALAFLYATFGtlnMADLSAKIRGLSFPLTGglagn 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 100 --ISLAMKLGLA-----------PFHYWLPEVTQGIPLHIGLIL----LTWQKIAPLSILYQFY---QLLNPTITT---- 155
Cdd:PRK12667 218 ppLALGVALALAlwaftikaaifPNHFWLPDAHPAAPSPVSAMLsglvVNVGAYAIIRFLYTIFgisPSLIDFRAAlspi 297

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 156 --ILAISSVFVGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTLLNLTIYIL----------LTVPMFITlmTNS 223
Cdd:PRK12667 298 liILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIInhaiaksllfLASGVFIH--AAG 375

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 699977103 224 ATTINTLSLAWNKTPMILTMTSIILLSLGGLPPLTGFLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYTRLIYSM 300
Cdd:PRK12667 376 TRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSL 452
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 54-191 1.49e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 40.42  E-value: 1.49e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  54 EAATKYFLTQATASMIILLVIILNYKQSGMWTLQ----QQTNNMLLNMMLI----SLAMKLGLAPFHYWLPE-------- 117
Cdd:MTH00217 160 QASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDYQalccLKIEKELQYFIFLgfflSLAIKIPKIPFHIWLPQahveapva 239

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 118 ---VTQGIPLHIG---LILLTWqkiaplSILYQFYQLLNPTITTiLAISSVFVGAWGGLNQTQTRKIMAYSSIAHMGWMT 191
Cdd:MTH00217 240 gsvILAGVLLKLGgygFIRFSW------PLLPEASEYFSPLIQT-LSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVT 312
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-188 1.70e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 40.18  E-value: 1.70e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103   2 NPITLIIIYFTILMGPVITMSSsNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYF-LTQATASMIILLVIILNYKQ 80
Cdd:PRK06589 115 SSRFLFFFNLTILIGVLIALSS-DLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLkILMISALLLFLPAVILIYTK 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103  81 SGMWTLQQQT-----NNMLLNMMLISLAMKLGLAPFHYWLPE-----------------VTQGIPLHIGLILLTWQkiap 138
Cdd:PRK06589 194 TGNLDFVSGGlfsknQSIILLLMFIYGIAKTAIFPVHSWLPAamvahypvsallhavivVKTGLFCIYKILLYIFG---- 269

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 699977103 139 LSILYQFYQLLNPTIttILAISSVFVGAWGGLNQTQTRKIMAYSSIAHMG 188
Cdd:PRK06589 270 LSYLQRIFAEFNWLI--FIPIVSIFYSSLKALKTDNIKKILAYSTISQLS 317
2a6301s01 TIGR00940
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial ...
 9-194 1.73e-03

Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273353 [Multi-domain]  Cd Length: 793  Bit Score: 40.21  E-value: 1.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103    9 IYFTILMGPVI-TMSSSNLLLMWVGLEMSLLAIIPLLAN-KKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGMWTL 86
Cdd:TIGR00940 110 AYLLAFMGAMLgVVLSDNLILLYVFWELTSIVSFLLISYwHHRAHSRYGAQKSLTITVFGGLAMLGGLILLGKITGSFSI 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103   87 QQ--QTNNMLLNMMLISLAMKLGLA---------PFHYWLPEVTQG-IPLHIGLILLTWQKiAPLSILYQFYQLLNPT-- 152
Cdd:TIGR00940 190 DAviASADAIRNSPLFGTAMVLVLLgaftksaqfPFHIWLPDAMEApTPVSAYLHSATMVK-AGLYLLARFTPVFAGTea 268

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 699977103  153 ---ITTILAISSVFVGAWGGLNQTQTRKIMAYSSIAHMGWMTAIL 194
Cdd:TIGR00940 269 wfwIVGLAGLITLLWGSYFAIFQQDLKGILAFSTISQLGLIMVLL 313
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 100-191 2.86e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 39.28  E-value: 2.86e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699977103 100 ISLAMKLGLAPFHYWLPE-----------VTQGIPLHIG---LILLTWqKIAPLSILYqfyqlLNPTITTILAISSVFvG 165
Cdd:MTH00204 217 LSLAVKIPQIPFHIWLPQahveapvagsvILAGILLKLGgygFLRFSW-PLFPAASEY-----FAPLIVMLSVIAVIY-G 289

                         90       100
                 ....*....|....*....|....*.
gi 699977103 166 AWGGLNQTQTRKIMAYSSIAHMGWMT 191
Cdd:MTH00204 290 SLTTCRQVDFKRLIAYSSVAHMGLVP 315
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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