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Conserved domains on  [gi|732682744|gb|AIZ89549|]
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glycerol-3-phosphate transporter permease [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

sn-glycerol-3-phosphate ABC transporter permease UgpA( domain architecture ID 10793417)

sn-glycerol-3-phosphate ABC transporter permease UgpA is part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate, and is probably responsible for the translocation of the substrate across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
16-295 2.95e-174

sn-glycerol-3-phosphate ABC transporter permease UgpA;


:

Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 482.79  E-value: 2.95e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744  16 LLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFVTLFHDSYYLDSFWTTIKFSTFVTVSGLLVSLFFAA 95
Cdd:PRK10561   1 LLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744  96 LVEYIVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFL 175
Cdd:PRK10561  81 LVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744 176 FFYAALQSIPRSLIEAAAIDGAGPIRRFFKIALPLIAPVSFFLLVVNLVYAFFDTFPVIDAATSGGPVQATTTLIYKIYR 255
Cdd:PRK10561 161 FFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAFFDTFPVIDAATSGGPVQATTTLIYKIYR 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 732682744 256 EGFTGLDLASSAAQSVVLMFLVIVLTVVQFRYVESKVRYQ 295
Cdd:PRK10561 241 EGFTGLDLSSSAAQSVVLMFLVIVLTVVQFRYVESKVRYQ 280
 
Name Accession Description Interval E-value
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
16-295 2.95e-174

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 482.79  E-value: 2.95e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744  16 LLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFVTLFHDSYYLDSFWTTIKFSTFVTVSGLLVSLFFAA 95
Cdd:PRK10561   1 LLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744  96 LVEYIVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFL 175
Cdd:PRK10561  81 LVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744 176 FFYAALQSIPRSLIEAAAIDGAGPIRRFFKIALPLIAPVSFFLLVVNLVYAFFDTFPVIDAATSGGPVQATTTLIYKIYR 255
Cdd:PRK10561 161 FFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAFFDTFPVIDAATSGGPVQATTTLIYKIYR 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 732682744 256 EGFTGLDLASSAAQSVVLMFLVIVLTVVQFRYVESKVRYQ 295
Cdd:PRK10561 241 EGFTGLDLSSSAAQSVVLMFLVIVLTVVQFRYVESKVRYQ 280
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
2-292 1.57e-85

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 258.14  E-value: 1.57e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744   2 SSSRPVFRSRWLPYLLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFVTLFHDSYYLDSFWTTIKFSTF 81
Cdd:COG1175    8 AARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGNTLLFTVV 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744  82 VTVSGLLVSLFFAALVEYIVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYD-WNHAQNSGQAMFL 160
Cdd:COG1175   88 SVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALGLEpINWLGDPSLALPA 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744 161 VVFASVWKQISYNFLFFYAALQSIPRSLIEAAAIDGAGPIRRFFKIALPLIAPVSFFLLVVNLVYAfFDTFPVIDAATSG 240
Cdd:COG1175  168 VIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGA-LQVFDLVYVLTGG 246

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 732682744 241 GPVQATTTLIYKIYREGFTGLDLASSAAQSVVLMFLVIVLTVVQFRYVESKV 292
Cdd:COG1175  247 GPGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 133-294 1.28e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 62.32  E-value: 1.28e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744  133 GRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFLFFYAALQSIPRSLIEAAAIDGAGPIRRFFKIALPLIA 212
Cdd:pfam00528  27 LQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNAL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744  213 PVSFFLLVVNLVYAFFDTFpVIDAATSGGPVQATTTLIYKIYREGFTgldlASSAAQSVVLMFLVIVLTVVQFRYVESKV 292
Cdd:pfam00528 107 PPILTGLALAFGGALGGAV-LLEFLGSWPGLGLLLIEAILGYDYPEI----QGPVLAAALILLLLNLLVDILQRLLDPRV 181


                  ..
gi 732682744  293 RY 294
Cdd:pfam00528 182 RK 183
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 72-278 3.19e-10

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 58.44  E-value: 3.19e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744  72 FWTTIKFSTFVTVSGLLVSLFFA-ALVEYIVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFnpgrglithflaefGYDWNH 150
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGiILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLF--------------GVLLGW 66

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744 151 AQNSGQAMFLVVFASVWkQISYNFLFFYAALQSIPRSLIEAAAIDGAGPIRRFFKIALPLIAPVSFFLLVVNLVYAFFDT 230
Cdd:cd06261   67 GILPGLGLPALILALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEF 145

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 732682744 231 FPVidaATSGGPVQATTTLIYKIYREGFTGLDLASSAAQSVVLMFLVI 278
Cdd:cd06261  146 ALV---SFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 12-209 1.08e-07

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 52.76  E-value: 1.08e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744   12 WLPYLLVAPQLIITVIFFIWPAGEALWYSLQSVDpfgfsSQFVGLDNFVTLFHDSYYLDSFWTTIKFSTFVT-VSGLLVS 90
Cdd:TIGR03262   1 LIARLLLAGMILALLLFLLLPLLALLTKSVYDSD-----GDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTaIVVPLAF 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744   91 LFFAALVEYIVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNpGRGLITHFLAEFgydwnhaqnSGQAMFLVVFASVWKQI 170
Cdd:TIGR03262  76 AFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFG-NQGLLKGLLGGF---------SIYGFWGIVIGEVFYTF 145

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 732682744  171 SYNFLFFYAALQSIPRSLIEAAAIDGAGPIRRFFKIALP 209
Cdd:TIGR03262 146 PHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLP 184
 
Name Accession Description Interval E-value
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
16-295 2.95e-174

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 482.79  E-value: 2.95e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744  16 LLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFVTLFHDSYYLDSFWTTIKFSTFVTVSGLLVSLFFAA 95
Cdd:PRK10561   1 LLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744  96 LVEYIVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFL 175
Cdd:PRK10561  81 LVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744 176 FFYAALQSIPRSLIEAAAIDGAGPIRRFFKIALPLIAPVSFFLLVVNLVYAFFDTFPVIDAATSGGPVQATTTLIYKIYR 255
Cdd:PRK10561 161 FFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAFFDTFPVIDAATSGGPVQATTTLIYKIYR 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 732682744 256 EGFTGLDLASSAAQSVVLMFLVIVLTVVQFRYVESKVRYQ 295
Cdd:PRK10561 241 EGFTGLDLSSSAAQSVVLMFLVIVLTVVQFRYVESKVRYQ 280
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
2-292 1.57e-85

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 258.14  E-value: 1.57e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744   2 SSSRPVFRSRWLPYLLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFVTLFHDSYYLDSFWTTIKFSTF 81
Cdd:COG1175    8 AARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGNTLLFTVV 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744  82 VTVSGLLVSLFFAALVEYIVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYD-WNHAQNSGQAMFL 160
Cdd:COG1175   88 SVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALGLEpINWLGDPSLALPA 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744 161 VVFASVWKQISYNFLFFYAALQSIPRSLIEAAAIDGAGPIRRFFKIALPLIAPVSFFLLVVNLVYAfFDTFPVIDAATSG 240
Cdd:COG1175  168 VIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGA-LQVFDLVYVLTGG 246

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 732682744 241 GPVQATTTLIYKIYREGFTGLDLASSAAQSVVLMFLVIVLTVVQFRYVESKV 292
Cdd:COG1175  247 GPGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 5-288 4.18e-33

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 122.56  E-value: 4.18e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744   5 RPVFRSRWLPYLLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFVTLFHDSYYLDSFWTTIKFSTFVTV 84
Cdd:COG1176    2 SAALRRRLRPLLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744  85 SGLLVSLFFAAlveYIVRGSRFYQTLML----LPYAVAPAVAAVLWIFLFNPGrGLITHFLAEFGYdWNHAQNSGQAMFL 160
Cdd:COG1176   82 ICLLLGYPIAY---FLARAPPRWRNLLLllviLPFWTSFLVRTYAWIVLLGRN-GLLNSLLLALGL-IDEPLRLLYTEFA 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744 161 VVFASVWKQISYNFLFFYAALQSIPRSLIEAAAIDGAGPIRRFFKIALPLIAP--VSFFLLVVNLVYAFFdtfpVIDAAT 238
Cdd:COG1176  157 VVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPgiIAGSLLVFIPALGAF----VTPALL 232

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 732682744 239 SGGPVQATTTLiykIYREGFTGLDLASSAAQSVVLMFLVIVLTVVQFRYV 288
Cdd:COG1176  233 GGGKVLMIGNL---IYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLL 279
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 9-279 8.90e-33

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 122.51  E-value: 8.90e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744   9 RSRWLpYLLVAPQLIITVIFFIWP-AGeaLWYSLQSVDPFG--FSSQFVGLDNFVTLFHDSYYLDSFWTTIKFSTFVTVS 85
Cdd:COG4209   25 RDWQL-YLMLLPGLIYLLIFSYLPmYG--IVIAFKDYNPFKgiFGSPWVGLKNFKFLFSSPDFWRVLRNTLLISLLKLVF 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744  86 GLLVSLFFAALVEYI--VRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYD-WNHAQNSGQAMFLVV 162
Cdd:COG4209  102 GFPLPIILALLLNELrsKRFKKTVQTISYLPHFLSWVVVAGIVYQFLSPDTGLVNQLLRALGGEpINFLTEPKYFRPIYV 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744 163 FASVWKQISYNFLFFYAALQSIPRSLIEAAAIDGAGPIRRFFKIALPLIAPVSFFLLVVNL---VYAFFDTFPVIDAats 239
Cdd:COG4209  182 FSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPTIVILLILNIgniLNVGFEQIYLLYN--- 258

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 732682744 240 gGPVQATTTLI--YkIYREGFTGLDLASSAA----QSVVLMFLVIV 279
Cdd:COG4209  259 -PLNYSTSDVIdtY-VYRIGLQNGDYSYATAvglfKSVVGLILVLI 302
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
9-291 1.88e-24

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 102.55  E-value: 1.88e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744   9 RSRWLPYLLVAPQLIITVIFFIWPAGEALWYSLQsvdpfgfssqfVGLDNFVTLFHDSYYLDSFWTTIKFSTFVTVSGLL 88
Cdd:COG1178    4 RPRRRPRLLLLLLALLLALLVLLPLLALLLRAFT-----------DGLANFWALLSDPYLWRALGNTLLLALLVTLLSLL 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744  89 VSLFFAALVEYI-VRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPgRGLITHFLAE-FGYDWNHAQNsgqaMFLVVFASV 166
Cdd:COG1178   73 LGVPLAWLLARTdFPGRRLLRWLLLLPLALPPYVVALAWIALFGP-NGLLNTLLRAlFGLEPPDIYG----LGGIILVLV 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744 167 WKQISYNFLFFYAALQSIPRSLIEAAAIDGAGPIRRFFKIALPLIAPVSFFLLVVNLVYAFFDtFPVidAATSGGPVqat 246
Cdd:COG1178  148 LFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLAD-FGT--PLVLGGGY--- 221

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 732682744 247 TTLIYKIYREGFTGLDLASSAAQSVVLMFLVIVLTVVQFRYVESK 291
Cdd:COG1178  222 TTLTTAIYQAWLGDFDLGAAAALALVLLLLVLLLLLLERRLRRRR 266
malF PRK10999
maltose ABC transporter permease MalF;
53-286 3.30e-19

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 87.32  E-value: 3.30e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744  53 FVGLDNFVTLFHDSY----YLDSFWTTIKFSTFVTVSGLLVSLFFAALVEY-IVRGSRFYQTLMLLPYAVAPAVAAVLWI 127
Cdd:PRK10999 264 TIGWKNFTRVFTDEGiqkpFIAIFIWTVVFSLLTVVLTVAVGMVLACLVQWeALKGKAVYRVLLILPYAVPSFISILIFK 343

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744 128 FLFNPGRGLITHFL-AEFGY--DWNHAQNSGQAMFLVVfaSVWKQISYNFLFFYAALQSIPRSLIEAAAIDGAGPIRRFF 204
Cdd:PRK10999 344 GLFNQSFGEINMMLsALFGIkpAWFSDPTLAKTMILIV--NTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFF 421

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744 205 KIALPLIAPVSFFLLVVNlvYAF-FDTFPVIDAATSGGP--VQATT---------TLIYKIYREGFTGLDLASSAAQSVV 272
Cdd:PRK10999 422 KITLPLLIKPLTPLMIAS--FAFnFNNFVLIQLLTNGGPdmIGTTTpagytdllvSYTYRIAFEGGGGQDFGLAAAIATL 499

                        250
                 ....*....|....
gi 732682744 273 LMFLVIVLTVVQFR 286
Cdd:PRK10999 500 IFLLVGALAILNLK 513
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 9-293 1.51e-14

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 71.68  E-value: 1.51e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744   9 RSRWLPYLLVAPqLIITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFVTLFHDSYYLDSFWTTIKFSTFVTVSGLL 88
Cdd:COG1177    1 SSRLGRLLLRLF-LALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATV 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744  89 VSLFFA-ALVEYIVRGSRFYQTLMLLPyavapavaavlwifLFNPGRGLITHFLAEFGydwnhAQNSGQAMFLVVFASVW 167
Cdd:COG1177   80 LGTPAAlALARYRFRGRRLLLALLLLP--------------LVVPGIVLGVALLLLFS-----ALGLSGGLWGLILAHVV 140

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744 168 KQISYNFLFFYAALQSIPRSLIEAAAIDGAGPIRRFFKIALPLIAP--VSFFLLVV-----NLVYAFFdtfpvidaaTSG 240
Cdd:COG1177  141 FTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPgiLAGALLAFtlsfdEFVITLF---------LAG 211

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 732682744 241 GPVQATTTLIYKIYREGFTgldlASSAAQSVVLMFLVIVLTVVQFRYVESKVR 293
Cdd:COG1177  212 PGVTTLPVYIYSMIRRGIS----PEINALSTLLILLSLLLLLLAERLRRRGER 260
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 1-214 1.21e-13

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 69.35  E-value: 1.21e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744   1 MSSSRPVFR---SRWLPYLLVAPQLIITVIFFIW-------PAGEALwyslqSVDPFGFSSQFvGLDNFVTLFHDSYYLD 70
Cdd:COG0395    1 MSATARRRRrrlGRILLYLLLILLALLFLFPLYWmvvtsfkPPAEIF-----SGPPSLLPSEF-TLENYRAAFTDGPFGR 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744  71 SFWTTIKFSTFVTVSGLLVSLFFA-ALVEYIVRGSRFYQTLMLLpyavapavaavlwIFLFNPGRGLITHFLAEFGYDWn 149
Cdd:COG0395   75 YLLNSLIVAVVSTVLSLLLSSLAAyALARFRFRGRKLLFLLILA-------------TLMIPGQVLLIPLYLLFRQLGL- 140

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 732682744 150 haQNSGQAMFLVVFASvwkQISYNFLFFYAALQSIPRSLIEAAAIDGAGPIRRFFKIALPLIAPV 214
Cdd:COG0395  141 --LNTYWGLILPYLAF---GLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPA 200
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
9-291 7.16e-13

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 68.65  E-value: 7.16e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744   9 RSRWLPYLLVApqlIITVIFFIWPAGEALWYSLQSVDPFGFSsqfvgLDNFVTLFHDSYYLDSFWTTIKFSTFVTVSGLL 88
Cdd:COG1178  285 RWRWLALALCL---LLVLLGLLLPLLALLLWSLTKALDDNLT-----LDNYRFVLLDPSLLRALLNSLLLALLAALLAVL 356

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744  89 VSLFFA-ALVEYIVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHflaefgydwnhaqnsgQAMFLVVFASVW 167
Cdd:COG1178  357 LALLLAyLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLPLLLY----------------GTLAILVLAYVV 420

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744 168 KQISYNFLFFYAALQSIPRSLIEAAAIDGAGPIRRFFKIALPLIAPVsfflLVVNLVYAFFDTFPVIDA----ATSGgpv 243
Cdd:COG1178  421 RFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPG----LLAAALLVFVTSMKELSAtlllRPPG--- 493

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 732682744 244 qaTTTLIYKIYREgFTGLDLASSAAQSVVLMFLVIVLTVVQFRYVESK 291
Cdd:COG1178  494 --FETLAVLIYQL-ASSGRYGEAAALALLLVLVSLLPVLLLERLLGRR 538
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 133-294 1.28e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 62.32  E-value: 1.28e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744  133 GRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFLFFYAALQSIPRSLIEAAAIDGAGPIRRFFKIALPLIA 212
Cdd:pfam00528  27 LQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNAL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744  213 PVSFFLLVVNLVYAFFDTFpVIDAATSGGPVQATTTLIYKIYREGFTgldlASSAAQSVVLMFLVIVLTVVQFRYVESKV 292
Cdd:pfam00528 107 PPILTGLALAFGGALGGAV-LLEFLGSWPGLGLLLIEAILGYDYPEI----QGPVLAAALILLLLNLLVDILQRLLDPRV 181


                  ..
gi 732682744  293 RY 294
Cdd:pfam00528 182 RK 183
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 72-278 3.19e-10

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 58.44  E-value: 3.19e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744  72 FWTTIKFSTFVTVSGLLVSLFFA-ALVEYIVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFnpgrglithflaefGYDWNH 150
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGiILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLF--------------GVLLGW 66

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744 151 AQNSGQAMFLVVFASVWkQISYNFLFFYAALQSIPRSLIEAAAIDGAGPIRRFFKIALPLIAPVSFFLLVVNLVYAFFDT 230
Cdd:cd06261   67 GILPGLGLPALILALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEF 145

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 732682744 231 FPVidaATSGGPVQATTTLIYKIYREGFTGLDLASSAAQSVVLMFLVI 278
Cdd:cd06261  146 ALV---SFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 1-227 1.29e-09

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 57.85  E-value: 1.29e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744   1 MSSSRPVFRSRWLPYLLVAPQLIITVIFFIWPAgeaLWYSLQSVDPFGFSSQF------VGLDNFVTLFHDSYYLDSFWT 74
Cdd:COG3833    1 MSRRKSRKRRRRLKLGLRHLVLIILAIIALFPI---LWVVSASFNPGGSLYSSslipenFTLENYKKLFTETPFLRWFLN 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744  75 TIKFSTFVTVSGLLVSLFFA-ALVEYIVRGSRFYQTLMLLpyavapavaavlwIFLFNPGRGLITHF--LAEFGydwnhA 151
Cdd:COG3833   78 SLIVAVVTAIISVFLAALAAyAFSRFRFKGRKAGLLALLL-------------LQMFPAFLALVALYllLSALG-----L 139

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 732682744 152 QNSGQAMFLVVFASvwkQISYNFLFFYAALQSIPRSLIEAAAIDGAGPIRRFFKIALPLIAPVsfflLVVNLVYAF 227
Cdd:COG3833  140 LNTLLGLILVYLGG---AIPFNTWLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPI----LAVVALLSF 208
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 12-209 1.08e-07

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 52.76  E-value: 1.08e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744   12 WLPYLLVAPQLIITVIFFIWPAGEALWYSLQSVDpfgfsSQFVGLDNFVTLFHDSYYLDSFWTTIKFSTFVT-VSGLLVS 90
Cdd:TIGR03262   1 LIARLLLAGMILALLLFLLLPLLALLTKSVYDSD-----GDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTaIVVPLAF 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744   91 LFFAALVEYIVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNpGRGLITHFLAEFgydwnhaqnSGQAMFLVVFASVWKQI 170
Cdd:TIGR03262  76 AFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFG-NQGLLKGLLGGF---------SIYGFWGIVIGEVFYTF 145

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 732682744  171 SYNFLFFYAALQSIPRSLIEAAAIDGAGPIRRFFKIALP 209
Cdd:TIGR03262 146 PHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLP 184
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 9-280 1.11e-05

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 46.15  E-value: 1.11e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744   9 RSRWLPYLLVAPQLIITVIFFIWPAGEALwysLQSVdpfgFSSQFVGLDNFVTLFHDSYYLDSFWTTIKFSTFVTVSGLL 88
Cdd:PRK15050  19 RRRLRPLLWLLLPLLVLAPLVVYPLVRVV---LQSL----TGEHGLGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLV 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744  89 VSLFFAALVEYI-VRGS----RFYQTLMLLPYAVAPAVAavlwIFLFNPgRGLITHFLAEFGYDWNHAQNsgqamFLvvf 163
Cdd:PRK15050  92 LGVLLALVLAFVpFPGAslvgRFIDTFVAFPSFLITLAF----TFLYGS-AGSVNIALQRLFGLEAPPLD-----FL--- 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744 164 ASVWKQISYNFLFF--------YAALQSIPRSLIEAAAIDGAGPIRRFFKIALPLIAPVSF------FLLVVNLvyafFD 229
Cdd:PRK15050 159 YSPGGVILAEITFYtpfvvrplLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAaggslcLLLTLNE----FG 234

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 732682744 230 TFPVIDAATsggpvqaTTTLIYKIYREGFTGLDLASSAAQSVVLMFLVIVL 280
Cdd:PRK15050 235 IVLFTGAKD-------VVTLPVLIYSKAIVDFDYPTACAIAVVNLALSLGL 278
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 9-213 1.95e-05

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 45.13  E-value: 1.95e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744   9 RSRWLPYLLVAPQLIITVIFFIWPAGEALWYSLQsvdpfgfssqfVGLDNFVTLFHDSYYLDSFWTTIKFSTFVTVSGLL 88
Cdd:COG0555    4 RVLPGFGLTLGLTLLYLSLIVLLPLAALVLKAAG-----------LGWAEFWAVLTSPRVLAALKLSLGTALIAALINLV 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744  89 VSLFFA-ALVEYIVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPgRGLITHFLAEFGYDWNHAQNSgqamflVVFASVW 167
Cdd:COG0555   73 FGLPLAwVLVRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGP-NGWLGQLLAPLGIKVAFTPLG------IVLAQTF 145

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 732682744 168 kqISYNFL--FFYAALQSIPRSLIEAAAIDGAGPIRRFFKIALPLIAP 213
Cdd:COG0555  146 --VSLPFVvrTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLP 191
modB PRK09421
molybdate ABC transporter permease subunit;
73-213 1.79e-03

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 38.75  E-value: 1.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732682744  73 WTTIKFSTFVTVSGLLVSLFFAALVEYIVRGSRFY-----QTLMLLPYAVAPAVAAVLWIFLFNPgRGLITHFLAE---- 143
Cdd:PRK09421   8 WQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPgksllDSLLHLPLVLPPVVTGYLLLISMGR-RGFIGQWLYEwfgi 86

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 732682744 144 -FGYDWNHAqnsGQAMFLVVFASVWKQISYnflffyaALQSIPRSLIEAAAIDGAGPIRRFFKIALPLIAP 213
Cdd:PRK09421  87 sFAFSWRGA---ALAAAVMAFPLMVRAIRL-------SLEAVDRKLEQAARTLGASPWRVFFTITLPLTLP 147
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 178-214 2.76e-03

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 38.11  E-value: 2.76e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 732682744 178 YAALQSIPRSLIEAAAIDGAGPIRRFFKIALPLIAPV 214
Cdd:COG1174  102 YTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPV 138
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
183-225 3.78e-03

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 38.18  E-value: 3.78e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 732682744 183 SIPRSLIEAAAIDGAGPIRRFFKIALPLIAPVSFFLLVVNLVY 225
Cdd:PRK10973 168 TLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIY 210
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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