|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13578 |
PRK13578 |
ornithine decarboxylase; Provisional |
1-719 |
0e+00 |
|
ornithine decarboxylase; Provisional
Pssm-ID: 237434 [Multi-domain] Cd Length: 720 Bit Score: 1618.50 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 1 MSKLKIAVSDSCPDCFTTQRECIYINESRNIDVAAIVLSLNDVTCGKLDEIDATGYGIPVFIATENQERVPAEYLPRISG 80
Cdd:PRK13578 1 MKSLKIAASRELPSCFSTHREVVALDQTDFTDVAAVVLSVADSRSGILALIKRTGFGIPVFVATEEEEEVPAEVLPRISG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 81 VFENCESRREFYGRQLETAASHYETQLRPPFFRALVDYVNQGNSAFDCPGHQGGEFFRRHPAGNQFVEYFGEALFRADLC 160
Cdd:PRK13578 81 VFELCESNNEFYGRQLETAASKYEENLLPPFFDTLTDYVEMGNSTFDCPGHQGGQFFRKHPAGRQFYDFFGENLFRADMC 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 161 NADVAMGDLLIHEGAPCIAQQHAAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHGALLQAGATPV 240
Cdd:PRK13578 161 NADVKLGDLLIHEGAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQAGATPV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 241 YLETARNPYGFIGGIDAHCFEESYLRELIAEVAPQRAKEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAW 320
Cdd:PRK13578 241 YLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAW 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 321 VGYEQFIPMMADCSPLLLDLNENDPGILVTQSVHKQQAGFSQTSQIHKKDSHIKGQQRYVPHKRMNNAFMMHASTSPFYP 400
Cdd:PRK13578 321 VGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCPHKRLNNAFMLHASTSPFYP 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 401 LFAALNINAKMHEGVSGRNMWMDCVVNGINARKLILDNCQHIRPFVPELVDGKPWQSYETAQIAVDLRFFQFVPGEHWHS 480
Cdd:PRK13578 401 LFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFSFEPGEKWHG 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 481 FEGYAENQYFVDPCKLLLTTPGIDARNGEYEAFGVPATILANFLRENGVVPEKCDLNSILFLLTPAEDMAKLQQLVALLV 560
Cdd:PRK13578 481 FEGYAEDQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANYLRENGIVPEKCDLNSILFLLTPAEDMAKLQQLVAMLA 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 561 RFEKLLESDAPLAEVLPSIYKQHEERYAGYTLRQLCQEMHDLYARHNVKQLQKEMFRKEHFPRVSMNPQEANYAYLRGEV 640
Cdd:PRK13578 561 RFEKHIEDDAPLAEVLPSVYKKNPERYRGYTLRQLCQEMHDLYVSHDVKQLQKEMFRKASFPRVVMNPQDANIAYIRGEV 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 641 ELVRLPDAEGRIAAEGALPYPPGVLCVVPGEIWGGAVLRYFSALEEGINLLPGFAPELQGVYIE-EHDGRKQVWCYVIKP 719
Cdd:PRK13578 641 ELVRLSEAEGRIAAEGALPYPPGVLCVVPGEIWGGAVQRYFLALEEGINLLPGFAPELQGVYLEtDADGRKRAYGYVLKP 720
|
|
| ODC_inducible |
TIGR04301 |
ornithine decarboxylase SpeF; Members of this family are known or trusted examples of ... |
1-718 |
0e+00 |
|
ornithine decarboxylase SpeF; Members of this family are known or trusted examples of ornithine decarboxylase, all encoded in the immediate vicinity of an ornithine-putrescine antiporter. Decarboxylation of ornithine to putrescine, followed by exchange of a putrescine for a new ornithine, is a proton-motive cycle that can be induced by low pH and protect a bacterium against transient exposure to acidic conditions.
Pssm-ID: 275113 [Multi-domain] Cd Length: 719 Bit Score: 1577.81 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 1 MSKLKIAVSDSCPDCFTTQRECIYINESRNIDVAAIVLSLNDVTCGKLDEIDATGYGIPVFIATENQERVPAEYLPRISG 80
Cdd:TIGR04301 1 MKKLKIAVSELLPDCFSTNREVVDINNTDFTDVAAVVISVDDIKNGVLEQIEETGFGIPVFVILNDEETVPAEILPRVTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 81 VFENCESRREFYGRQLETAASHYETQLRPPFFRALVDYVNQGNSAFDCPGHQGGEFFRRHPAGNQFVEYFGEALFRADLC 160
Cdd:TIGR04301 81 VIDLNESDIDFYGRQIETAATKYEEKLLPPFFGALVKYVEQGNSAFDCPGHQGGQFFRKHPAGRQFYDFFGENLFRSDLC 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 161 NADVAMGDLLIHEGAPCIAQQHAAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHGALLQAGATPV 240
Cdd:TIGR04301 161 NADVALGDLLIHEGAPCDAQQHAAKVFNADKTYFVLNGTSASNKVVLNALLTPGDLVLFDRNNHKSNHHGALIQAGATPV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 241 YLETARNPYGFIGGIDAHCFEESYLRELIAEVAPQRAKEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAW 320
Cdd:TIGR04301 241 YLETARNPFGFIGGIDEHCFEEEYLRELIREVAPERAKEKRPFRLAIIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAW 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 321 VGYEQFIPMMADCSPLLLDLNENDPGILVTQSVHKQQAGFSQTSQIHKKDSHIKGQQRYVPHKRMNNAFMMHASTSPFYP 400
Cdd:TIGR04301 321 VGYEQFIPMMKDCSPLLLELNPEDPGILVTQSVHKQQAGFSQTSQIHKKDSHIKGQARYCNHKRFNNAFMMHASTSPFYP 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 401 LFAALNINAKMHEGVSGRNMWMDCVVNGINARKLILDNCQHIRPFVPELVDGKPWQSYETAQIAVDLRFFQFVPGEHWHS 480
Cdd:TIGR04301 401 LFAALDVNAKMHEGESGRRLWMDCVKTGIEARKLLLKNCKYIRPFIPEMVDGKPWQDYDTDQIANDLRFFNFVPGEKWHS 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 481 FEGYAENQYFVDPCKLLLTTPGIDARNGEYEAFGVPATILANFLRENGVVPEKCDLNSILFLLTPAEDMAKLQQLVALLV 560
Cdd:TIGR04301 481 FEGYGENQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANFLRENGIIPEKCDLNSILFLLTPAEDMAKMQHLVAQIA 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 561 RFEKLLESDAPLAEVLPSIYKQHEERYAGYTLRQLCQEMHDLYARHNVKQLQKEMFRKEHFPRVSMNPQEANYAYLRGEV 640
Cdd:TIGR04301 561 RFEKLLEEDAPLAEVLPSVYKANEERYKGYTIRQLCQEMHDLYVSRNVKQLQKEMFRKAHFPEVVMNPQEANIEFVRGEA 640
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 732685371 641 ELVRLPDAEGRIAAEGALPYPPGVLCVVPGEIWGGAVLRYFSALEEGINLLPGFAPELQGVYIE-EHDGRKQVWCYVIK 718
Cdd:TIGR04301 641 ELVPLEQAEGRIAAEGALPYPPGVLCVVPGEIWGGAVQQYFLALEEGINLLPGFAPELQGVYLEkDEDGRKRAYGYVLK 719
|
|
| OKR_DC_1 |
pfam01276 |
Orn/Lys/Arg decarboxylase, major domain; |
109-551 |
0e+00 |
|
Orn/Lys/Arg decarboxylase, major domain;
Pssm-ID: 396025 [Multi-domain] Cd Length: 417 Bit Score: 713.51 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 109 PPFFRALVDYVNQGNSAFDCPGHQGGEFFRRHPAGNQFVEYFGEALFRADLCNADVAMGDLLIHEGAPCIAQQHAAKVFN 188
Cdd:pfam01276 1 PPLYKALFKYVRRGNYTFHCPGHQGGAGFQKHPAGRFFYDFFGENLLRIDVCIEDVELGDLLDHEGAIKEAQKYAARVFG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 189 ADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHgALLQAGATPVYLETARNPYGFIGGIDAHCFEESYLREL 268
Cdd:pfam01276 81 ADKSYFVVNGTSGSNKTVGMAVCTPGDTILIDRNCHKSIHH-ALMLSGATPVYLEPSRNAYGIIGGIPLHEFQEETLKEA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 269 IAEVAPQRAkearpFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMADCSPLLLDlNENDPGIL 348
Cdd:pfam01276 160 IAEVPDAKG-----PRLAVITNPTYDGVLYNAKEIVDTLHHLSDPILFDSAWVGYEQFIPIYADASPMGGE-NENGPGIF 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 349 VTQSVHKQQAGFSQTSQIHKKDSHIkgqqryVPHKRMNNAFMMHASTSPFYPLFAALNINAKMHEGVSGRNMWMDCVVNG 428
Cdd:pfam01276 234 VTQSVHKLLAALSQASYIHKKEGHI------VNHDRFNEAFMMHATTSPSYPIFASLDVAAKMLEGNSGRRLWNECVERA 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 429 INARKLI--LDNCQHIRPFVPELVDGKPwqsyetaqiavdlrFFQFVPGEHWHSFEGYAENQYFVDPCKLLLTTPGIDaR 506
Cdd:pfam01276 308 IEFRKAIdtLNNCEFFRPWNPEIVDGKE--------------CWPFHPGETWHGFEGYADNQYFLDPCKLTILTPGMD-E 372
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 732685371 507 NGEYEAFGVPATILANFLRENGVVPEKCDLNSILFLLTPAEDMAK 551
Cdd:pfam01276 373 DGEYSEFGVPATIVAKWLRENGIVPEKTDLNNILFLFTPGEDRTK 417
|
|
| LdcC |
COG1982 |
Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism]; |
103-703 |
0e+00 |
|
Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism];
Pssm-ID: 441585 [Multi-domain] Cd Length: 486 Bit Score: 589.00 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 103 YETQLRPPFFRALVDYVNQGNSAFDCPGHQGGEFFrrhpaGNQFVEYFGEALFRADLCNaDVAMGDLLIHEGAPCIAQQH 182
Cdd:COG1982 1 YMDQLLTPLFDALKKYAERGPVSFHVPGHKGGRGF-----GREFYDFFGENVFRLDLTE-LPGLDDLHDPEGVIKEAQEL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 183 AAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHGaLLQAGATPVYLETA-RNPYGFIGGIDAHCFE 261
Cdd:COG1982 75 AAEAFGADRTFFLVNGTSSGNKAMILAVCGPGDKVLVPRNCHKSVIHG-LILSGAIPVYLNPEiDNELGIIGGITPEAVE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 262 ESYlreliaevapqraKEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMAdCSPLLLdln 341
Cdd:COG1982 154 EAL-------------IEHPDAKAVLITNPTYYGVCYDLKAIAELAHEHGIPVLVDEAHGAHFGFHPDLP-RSAMEA--- 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 342 endPGILVTQSVHKQQAGFSQTSQIHKKDSHikgqqryVPHKRMNNAFMMHASTSPFYPLFAALNINAKMHEGvSGRNMW 421
Cdd:COG1982 217 ---GADLVVQSTHKTLGALTQSSMLHVKGGR-------VDHERVNEALMLLQSTSPSYLLMASLDVARRQMAG-EGEELL 285
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 422 MDCVVNGINARKLILDNcQHIRPFVPELVDGkpwqsyetaqiavdlrffqfvpgehwhsfegyaENQYFVDPCKLLLTTP 501
Cdd:COG1982 286 DEALELAIEARKEINKI-PGLYVFGPEDLGA---------------------------------PGVYDLDPTKLTIDVP 331
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 502 GIdarngeyeafGVPATILANFLREN-GVVPEKCDLNSILFLLTPAEDMAKLQQLVALLVRFEKLLESDAPLAEVLPsiy 580
Cdd:COG1982 332 GL----------GISGYEVAEYLREEyGIQVELADLYNILFLLSLGDTKEDIERLVAALKELKRLYDKNAPLEEVLP--- 398
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 581 kqheeryagytlrqlcqemhdlyarhnvkqlqkEMFRKEhfPRVSMNPQEANYAylrgEVELVRLPDAEGRIAAEGALPY 660
Cdd:COG1982 399 ---------------------------------LAFPPL--PELVMSPREAFFA----ETELVPLEEAVGRIAAEMVIPY 439
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 732685371 661 PPGVLCVVPGEIWGGAVLRYFSALEEGINLLPGFA-PELQGVYI 703
Cdd:COG1982 440 PPGIPLLMPGERITEEVIDYLRALEEAGGRFPGFEdPELRTIRV 483
|
|
| Orn_deC_like |
cd00615 |
Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent ... |
110-435 |
1.76e-130 |
|
Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Pssm-ID: 99739 [Multi-domain] Cd Length: 294 Bit Score: 388.15 E-value: 1.76e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 110 PFFRALVDYVNQGNSAFDCPGHQGGEFFRRHpagnqFVEYFGEALFRADLCNaDVAMGDLLIHEGAPCIAQQHAAKVFNA 189
Cdd:cd00615 1 PLFEALKEYAKRGIISFHVPGHKGGRGFRKS-----FYEFYGENLFKADVTE-LTGLDDLLDPTGPIKEAQELAARAFGA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 190 DKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHGALLqAGATPVYLETARNPY-GFIGGIDAHCFEESYlrel 268
Cdd:cd00615 75 KHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVL-SGAVPVYLKPERNPYyGIAGGIPPETFKKAL---- 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 269 iaevapqraKEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMADCSPLLldlnendPGIL 348
Cdd:cd00615 150 ---------IEHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMA-------GADI 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 349 VTQSVHKQQAGFSQTSQIHKKDShikgqqrYVPHKRMNNAFMMHASTSPFYPLFAALNINAKMHeGVSGRNMWMDCVVNG 428
Cdd:cd00615 214 VVQSTHKTLPALTQGSMIHVKGD-------LVNPDRVNEALNLHQSTSPSYLILASLDVARAMM-ALEGKELVEELIELA 285
|
....*..
gi 732685371 429 INARKLI 435
Cdd:cd00615 286 LYARQEI 292
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13578 |
PRK13578 |
ornithine decarboxylase; Provisional |
1-719 |
0e+00 |
|
ornithine decarboxylase; Provisional
Pssm-ID: 237434 [Multi-domain] Cd Length: 720 Bit Score: 1618.50 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 1 MSKLKIAVSDSCPDCFTTQRECIYINESRNIDVAAIVLSLNDVTCGKLDEIDATGYGIPVFIATENQERVPAEYLPRISG 80
Cdd:PRK13578 1 MKSLKIAASRELPSCFSTHREVVALDQTDFTDVAAVVLSVADSRSGILALIKRTGFGIPVFVATEEEEEVPAEVLPRISG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 81 VFENCESRREFYGRQLETAASHYETQLRPPFFRALVDYVNQGNSAFDCPGHQGGEFFRRHPAGNQFVEYFGEALFRADLC 160
Cdd:PRK13578 81 VFELCESNNEFYGRQLETAASKYEENLLPPFFDTLTDYVEMGNSTFDCPGHQGGQFFRKHPAGRQFYDFFGENLFRADMC 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 161 NADVAMGDLLIHEGAPCIAQQHAAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHGALLQAGATPV 240
Cdd:PRK13578 161 NADVKLGDLLIHEGAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQAGATPV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 241 YLETARNPYGFIGGIDAHCFEESYLRELIAEVAPQRAKEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAW 320
Cdd:PRK13578 241 YLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAW 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 321 VGYEQFIPMMADCSPLLLDLNENDPGILVTQSVHKQQAGFSQTSQIHKKDSHIKGQQRYVPHKRMNNAFMMHASTSPFYP 400
Cdd:PRK13578 321 VGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCPHKRLNNAFMLHASTSPFYP 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 401 LFAALNINAKMHEGVSGRNMWMDCVVNGINARKLILDNCQHIRPFVPELVDGKPWQSYETAQIAVDLRFFQFVPGEHWHS 480
Cdd:PRK13578 401 LFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFSFEPGEKWHG 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 481 FEGYAENQYFVDPCKLLLTTPGIDARNGEYEAFGVPATILANFLRENGVVPEKCDLNSILFLLTPAEDMAKLQQLVALLV 560
Cdd:PRK13578 481 FEGYAEDQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANYLRENGIVPEKCDLNSILFLLTPAEDMAKLQQLVAMLA 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 561 RFEKLLESDAPLAEVLPSIYKQHEERYAGYTLRQLCQEMHDLYARHNVKQLQKEMFRKEHFPRVSMNPQEANYAYLRGEV 640
Cdd:PRK13578 561 RFEKHIEDDAPLAEVLPSVYKKNPERYRGYTLRQLCQEMHDLYVSHDVKQLQKEMFRKASFPRVVMNPQDANIAYIRGEV 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 641 ELVRLPDAEGRIAAEGALPYPPGVLCVVPGEIWGGAVLRYFSALEEGINLLPGFAPELQGVYIE-EHDGRKQVWCYVIKP 719
Cdd:PRK13578 641 ELVRLSEAEGRIAAEGALPYPPGVLCVVPGEIWGGAVQRYFLALEEGINLLPGFAPELQGVYLEtDADGRKRAYGYVLKP 720
|
|
| ODC_inducible |
TIGR04301 |
ornithine decarboxylase SpeF; Members of this family are known or trusted examples of ... |
1-718 |
0e+00 |
|
ornithine decarboxylase SpeF; Members of this family are known or trusted examples of ornithine decarboxylase, all encoded in the immediate vicinity of an ornithine-putrescine antiporter. Decarboxylation of ornithine to putrescine, followed by exchange of a putrescine for a new ornithine, is a proton-motive cycle that can be induced by low pH and protect a bacterium against transient exposure to acidic conditions.
Pssm-ID: 275113 [Multi-domain] Cd Length: 719 Bit Score: 1577.81 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 1 MSKLKIAVSDSCPDCFTTQRECIYINESRNIDVAAIVLSLNDVTCGKLDEIDATGYGIPVFIATENQERVPAEYLPRISG 80
Cdd:TIGR04301 1 MKKLKIAVSELLPDCFSTNREVVDINNTDFTDVAAVVISVDDIKNGVLEQIEETGFGIPVFVILNDEETVPAEILPRVTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 81 VFENCESRREFYGRQLETAASHYETQLRPPFFRALVDYVNQGNSAFDCPGHQGGEFFRRHPAGNQFVEYFGEALFRADLC 160
Cdd:TIGR04301 81 VIDLNESDIDFYGRQIETAATKYEEKLLPPFFGALVKYVEQGNSAFDCPGHQGGQFFRKHPAGRQFYDFFGENLFRSDLC 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 161 NADVAMGDLLIHEGAPCIAQQHAAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHGALLQAGATPV 240
Cdd:TIGR04301 161 NADVALGDLLIHEGAPCDAQQHAAKVFNADKTYFVLNGTSASNKVVLNALLTPGDLVLFDRNNHKSNHHGALIQAGATPV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 241 YLETARNPYGFIGGIDAHCFEESYLRELIAEVAPQRAKEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAW 320
Cdd:TIGR04301 241 YLETARNPFGFIGGIDEHCFEEEYLRELIREVAPERAKEKRPFRLAIIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAW 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 321 VGYEQFIPMMADCSPLLLDLNENDPGILVTQSVHKQQAGFSQTSQIHKKDSHIKGQQRYVPHKRMNNAFMMHASTSPFYP 400
Cdd:TIGR04301 321 VGYEQFIPMMKDCSPLLLELNPEDPGILVTQSVHKQQAGFSQTSQIHKKDSHIKGQARYCNHKRFNNAFMMHASTSPFYP 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 401 LFAALNINAKMHEGVSGRNMWMDCVVNGINARKLILDNCQHIRPFVPELVDGKPWQSYETAQIAVDLRFFQFVPGEHWHS 480
Cdd:TIGR04301 401 LFAALDVNAKMHEGESGRRLWMDCVKTGIEARKLLLKNCKYIRPFIPEMVDGKPWQDYDTDQIANDLRFFNFVPGEKWHS 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 481 FEGYAENQYFVDPCKLLLTTPGIDARNGEYEAFGVPATILANFLRENGVVPEKCDLNSILFLLTPAEDMAKLQQLVALLV 560
Cdd:TIGR04301 481 FEGYGENQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANFLRENGIIPEKCDLNSILFLLTPAEDMAKMQHLVAQIA 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 561 RFEKLLESDAPLAEVLPSIYKQHEERYAGYTLRQLCQEMHDLYARHNVKQLQKEMFRKEHFPRVSMNPQEANYAYLRGEV 640
Cdd:TIGR04301 561 RFEKLLEEDAPLAEVLPSVYKANEERYKGYTIRQLCQEMHDLYVSRNVKQLQKEMFRKAHFPEVVMNPQEANIEFVRGEA 640
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 732685371 641 ELVRLPDAEGRIAAEGALPYPPGVLCVVPGEIWGGAVLRYFSALEEGINLLPGFAPELQGVYIE-EHDGRKQVWCYVIK 718
Cdd:TIGR04301 641 ELVPLEQAEGRIAAEGALPYPPGVLCVVPGEIWGGAVQQYFLALEEGINLLPGFAPELQGVYLEkDEDGRKRAYGYVLK 719
|
|
| OKR_DC_1 |
pfam01276 |
Orn/Lys/Arg decarboxylase, major domain; |
109-551 |
0e+00 |
|
Orn/Lys/Arg decarboxylase, major domain;
Pssm-ID: 396025 [Multi-domain] Cd Length: 417 Bit Score: 713.51 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 109 PPFFRALVDYVNQGNSAFDCPGHQGGEFFRRHPAGNQFVEYFGEALFRADLCNADVAMGDLLIHEGAPCIAQQHAAKVFN 188
Cdd:pfam01276 1 PPLYKALFKYVRRGNYTFHCPGHQGGAGFQKHPAGRFFYDFFGENLLRIDVCIEDVELGDLLDHEGAIKEAQKYAARVFG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 189 ADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHgALLQAGATPVYLETARNPYGFIGGIDAHCFEESYLREL 268
Cdd:pfam01276 81 ADKSYFVVNGTSGSNKTVGMAVCTPGDTILIDRNCHKSIHH-ALMLSGATPVYLEPSRNAYGIIGGIPLHEFQEETLKEA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 269 IAEVAPQRAkearpFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMADCSPLLLDlNENDPGIL 348
Cdd:pfam01276 160 IAEVPDAKG-----PRLAVITNPTYDGVLYNAKEIVDTLHHLSDPILFDSAWVGYEQFIPIYADASPMGGE-NENGPGIF 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 349 VTQSVHKQQAGFSQTSQIHKKDSHIkgqqryVPHKRMNNAFMMHASTSPFYPLFAALNINAKMHEGVSGRNMWMDCVVNG 428
Cdd:pfam01276 234 VTQSVHKLLAALSQASYIHKKEGHI------VNHDRFNEAFMMHATTSPSYPIFASLDVAAKMLEGNSGRRLWNECVERA 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 429 INARKLI--LDNCQHIRPFVPELVDGKPwqsyetaqiavdlrFFQFVPGEHWHSFEGYAENQYFVDPCKLLLTTPGIDaR 506
Cdd:pfam01276 308 IEFRKAIdtLNNCEFFRPWNPEIVDGKE--------------CWPFHPGETWHGFEGYADNQYFLDPCKLTILTPGMD-E 372
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 732685371 507 NGEYEAFGVPATILANFLRENGVVPEKCDLNSILFLLTPAEDMAK 551
Cdd:pfam01276 373 DGEYSEFGVPATIVAKWLRENGIVPEKTDLNNILFLFTPGEDRTK 417
|
|
| LdcC |
COG1982 |
Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism]; |
103-703 |
0e+00 |
|
Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism];
Pssm-ID: 441585 [Multi-domain] Cd Length: 486 Bit Score: 589.00 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 103 YETQLRPPFFRALVDYVNQGNSAFDCPGHQGGEFFrrhpaGNQFVEYFGEALFRADLCNaDVAMGDLLIHEGAPCIAQQH 182
Cdd:COG1982 1 YMDQLLTPLFDALKKYAERGPVSFHVPGHKGGRGF-----GREFYDFFGENVFRLDLTE-LPGLDDLHDPEGVIKEAQEL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 183 AAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHGaLLQAGATPVYLETA-RNPYGFIGGIDAHCFE 261
Cdd:COG1982 75 AAEAFGADRTFFLVNGTSSGNKAMILAVCGPGDKVLVPRNCHKSVIHG-LILSGAIPVYLNPEiDNELGIIGGITPEAVE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 262 ESYlreliaevapqraKEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMAdCSPLLLdln 341
Cdd:COG1982 154 EAL-------------IEHPDAKAVLITNPTYYGVCYDLKAIAELAHEHGIPVLVDEAHGAHFGFHPDLP-RSAMEA--- 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 342 endPGILVTQSVHKQQAGFSQTSQIHKKDSHikgqqryVPHKRMNNAFMMHASTSPFYPLFAALNINAKMHEGvSGRNMW 421
Cdd:COG1982 217 ---GADLVVQSTHKTLGALTQSSMLHVKGGR-------VDHERVNEALMLLQSTSPSYLLMASLDVARRQMAG-EGEELL 285
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 422 MDCVVNGINARKLILDNcQHIRPFVPELVDGkpwqsyetaqiavdlrffqfvpgehwhsfegyaENQYFVDPCKLLLTTP 501
Cdd:COG1982 286 DEALELAIEARKEINKI-PGLYVFGPEDLGA---------------------------------PGVYDLDPTKLTIDVP 331
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 502 GIdarngeyeafGVPATILANFLREN-GVVPEKCDLNSILFLLTPAEDMAKLQQLVALLVRFEKLLESDAPLAEVLPsiy 580
Cdd:COG1982 332 GL----------GISGYEVAEYLREEyGIQVELADLYNILFLLSLGDTKEDIERLVAALKELKRLYDKNAPLEEVLP--- 398
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 581 kqheeryagytlrqlcqemhdlyarhnvkqlqkEMFRKEhfPRVSMNPQEANYAylrgEVELVRLPDAEGRIAAEGALPY 660
Cdd:COG1982 399 ---------------------------------LAFPPL--PELVMSPREAFFA----ETELVPLEEAVGRIAAEMVIPY 439
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 732685371 661 PPGVLCVVPGEIWGGAVLRYFSALEEGINLLPGFA-PELQGVYI 703
Cdd:COG1982 440 PPGIPLLMPGERITEEVIDYLRALEEAGGRFPGFEdPELRTIRV 483
|
|
| Orn_deC_like |
cd00615 |
Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent ... |
110-435 |
1.76e-130 |
|
Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Pssm-ID: 99739 [Multi-domain] Cd Length: 294 Bit Score: 388.15 E-value: 1.76e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 110 PFFRALVDYVNQGNSAFDCPGHQGGEFFRRHpagnqFVEYFGEALFRADLCNaDVAMGDLLIHEGAPCIAQQHAAKVFNA 189
Cdd:cd00615 1 PLFEALKEYAKRGIISFHVPGHKGGRGFRKS-----FYEFYGENLFKADVTE-LTGLDDLLDPTGPIKEAQELAARAFGA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 190 DKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHGALLqAGATPVYLETARNPY-GFIGGIDAHCFEESYlrel 268
Cdd:cd00615 75 KHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVL-SGAVPVYLKPERNPYyGIAGGIPPETFKKAL---- 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 269 iaevapqraKEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMADCSPLLldlnendPGIL 348
Cdd:cd00615 150 ---------IEHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMA-------GADI 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 349 VTQSVHKQQAGFSQTSQIHKKDShikgqqrYVPHKRMNNAFMMHASTSPFYPLFAALNINAKMHeGVSGRNMWMDCVVNG 428
Cdd:cd00615 214 VVQSTHKTLPALTQGSMIHVKGD-------LVNPDRVNEALNLHQSTSPSYLILASLDVARAMM-ALEGKELVEELIELA 285
|
....*..
gi 732685371 429 INARKLI 435
Cdd:cd00615 286 LYARQEI 292
|
|
| PRK15029 |
PRK15029 |
arginine decarboxylase; Provisional |
58-714 |
3.78e-124 |
|
arginine decarboxylase; Provisional
Pssm-ID: 184989 [Multi-domain] Cd Length: 755 Bit Score: 388.05 E-value: 3.78e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 58 IPVFIATENQERVPA---EYLPRISGVFENCESRREFYGRQLETAASHYETQLRPPFFRALVDYVNQGNSAFDCPGHQGG 134
Cdd:PRK15029 86 VPVFLLGDREKALAAmdrDLLELVDEFAWILEDTADFIAGRAVAAMTRYRQQLLPPLFSALMKYSDIHEYSWAAPGHQGG 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 135 EFFRRHPAGNQFVEYFGEALFRADLCNADVAMGDLLIHEGAPCIAQQHAAKVFNADKTYFVLNGTSSSNKVVLNALLTPG 214
Cdd:PRK15029 166 VGFTKTPAGRFYHDYYGENLFRTDMGIERTSLGSLLDHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDN 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 215 DLVLFDRNNHKSNHHGALLqAGATPVYLETARNPYGFIGGIDAHCFEESYLRELIAEVAPQRAKEARPFRLAVIQLGTYD 294
Cdd:PRK15029 246 DVVVVDRNCHKSIEQGLIL-TGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYD 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 295 GTIYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMADCSPLLLD-LNENDPGILVTQSVHKQQAGFSQTSQIHKKDShi 373
Cdd:PRK15029 325 GVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEpGDHNGPTVFATHSTHKLLNALSQASYIHVREG-- 402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 374 kgqQRYVPHKRMNNAFMMHASTSPFYPLFAALNINAKMHEGVSGRNMWMDCVVNGINARKLIL--------DNCQHIRPF 445
Cdd:PRK15029 403 ---RGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMArlykeftaDGSWFFKPW 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 446 VPELV----DGK--PWQSYETAQIAVDLRFFQFVPGEHWHSFEGYAENQYFVDPCKLLLTTPGIdARNGEYEAFGVPATI 519
Cdd:PRK15029 480 NKEVVtdpqTGKtyDFADAPTKLLTTVQDCWVMHPGESWHGFKDLPDNWSMLDPIKVSILAPGM-GEDGELEETGVPAAL 558
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 520 LANFLRENGVVPEKCDLNSILFLLTPAEDMAKLQQLVALLVRFEKLLESDAPLAEVLPSIYKQHEERYAGYTLRQLCQEM 599
Cdd:PRK15029 559 VTAWLGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYDANTPLAQVMPELVEQYPDTYANMGIHDLGDTM 638
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 600 HDLYARHNVKQLQKEMFrkEHFPRVSMNPQEANYAYLRGEVELVRLPDAEGRIAAEGALPYPPGVLCVVPGEIWG---GA 676
Cdd:PRK15029 639 FAWLKENNPGARLNEAY--SGLPVAEITPREAYNAIVDNNVELVSIENLPGRIAANSVIPYPPGIPMLLSGENFGdknSP 716
|
650 660 670
....*....|....*....|....*....|....*...
gi 732685371 677 VLRYFSALEEGINLLPGFAPELQGVYIEehDGRKQVWC 714
Cdd:PRK15029 717 QVSYLRSLQSWDHHFPGFEHETEGTEII--DGIYHVMC 752
|
|
| PRK15399 |
PRK15399 |
lysine decarboxylase; |
30-712 |
1.76e-117 |
|
lysine decarboxylase;
Pssm-ID: 185297 [Multi-domain] Cd Length: 713 Bit Score: 369.45 E-value: 1.76e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 30 NIDVAAIVLSLNDVTCGKLDEIDATGYGIPV--FIATENQERVPAEYLPRISGVFENCESRREFYGRQLETAASHYETQL 107
Cdd:PRK15399 49 NPRICGVIFDWDEYSLDLCSDINQLNEYLPLyaFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTNEYLDNI 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 108 RPPFFRALVDYVNQGNSAFDCPGHQGGEFFRRHPAGNQFVEYFGEALFRADLCNADVAMGDLLIHEGAPCIAQQHAAKVF 187
Cdd:PRK15399 129 TPPFTKALFTYVKEGKYTFCTPGHMGGTAYQKSPVGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTF 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 188 NADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHgALLQAGATPVYLETARNPYGFIGGIDAHCFEesylRE 267
Cdd:PRK15399 209 GAEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAH-LLMMSDVVPIWLKPTRNALGILGGIPRREFT----RD 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 268 LIAEVAPQRAKEARPFRlAVIQLGTYDGTIYNArqvvDKIGHLCDY--ILFDSAWVGYEQFIPMMADCSPLlldLNENDP 345
Cdd:PRK15399 284 SIEEKVAATTQAQWPVH-AVITNSTYDGLLYNT----DWIKQTLDVpsIHFDSAWVPYTHFHPIYQGKSGM---SGERVP 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 346 G--ILVTQSVHKQQAGFSQTSQIhkkdsHIKGQqryVPHKRMNNAFMMHASTSPFYPLFAALNINAKMHEGVSGRNMWMD 423
Cdd:PRK15399 356 GkvIFETQSTHKMLAAFSQASLI-----HIKGE---YDEETFNEAFMMHTSTSPSYPIVASVETAAAMLRGNPGKRLINR 427
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 424 CVVNGINARKLIldncQHIRpfvpELVDG---KPWQSYETAQIAVdlrfFQFVPGEHWHSFEGYAENQYFVDPCKLLLTT 500
Cdd:PRK15399 428 SVERALHFRKEV----QRLR----EESDGwffDIWQPENVDEAEC----WPVAPGEQWHGFKDADADHMFLDPVKVTILT 495
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 501 PGIDaRNGEYEAFGVPATILANFLRENGVVPEKCDLNSILFLLTPAEDMAKLQQLVALLVRFEKLLESDAPLAEVLPSIY 580
Cdd:PRK15399 496 PGMD-EQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFKRAYDLNLRVKNMLPDLY 574
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 581 KQHEERYAGYTLRQLCQEMHDLYARHNVKQLqkeMFRK-EHFPRVSMNPQEANYAYLRGEVELVRLPDAEGRIAAEGALP 659
Cdd:PRK15399 575 AEDPDFYRNMRIQDLAQGIHKLIRKHDLPGL---MLRAfDVLPEMIMTPHQAWQRQIKGEVETVALEQLVGRVSANMILP 651
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 732685371 660 YPPGVLCVVPGEIW---GGAVLRYFSALEEGINLLPGFAPELQGVYIEEhDGRKQV 712
Cdd:PRK15399 652 YPPGVPLLMPGEMIteeSRAVLDFLLMLCSIGQHYPGFETDIHGAKRDE-DGVYRV 706
|
|
| PRK15400 |
PRK15400 |
lysine decarboxylase; |
95-712 |
1.92e-111 |
|
lysine decarboxylase;
Pssm-ID: 185298 [Multi-domain] Cd Length: 714 Bit Score: 353.77 E-value: 1.92e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 95 QLETAASHYETQLRPPFFRALVDYVNQGNSAFDCPGHQGGEFFRRHPAGNQFVEYFGEALFRADLCNADVAMGDLLIHEG 174
Cdd:PRK15400 116 KIKQTTDEYIDTILPPLTKALFKYVREGKYTFCTPGHMGGTAFQKSPVGSLFYDFFGPNTMKSDISISVSELGSLLDHSG 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 175 APCIAQQHAAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHgALLQAGATPVYLETARNPYGFIGG 254
Cdd:PRK15400 196 PHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTH-LMMMSDVTPIYFRPTRNAYGILGG 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 255 IDahcfEESYLRELIAEVAPQRAKEARPfRLAVIQLGTYDGTIYNARQVVDKIGhlCDYILFDSAWVGYEQFIPMMADCS 334
Cdd:PRK15400 275 IP----QSEFQHATIAKRVKETPNATWP-VHAVITNSTYDGLLYNTDFIKKTLD--VKSIHFDSAWVPYTNFSPIYEGKC 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 335 PLLldlNENDPG--ILVTQSVHKQQAGFSQTSQIHkkdshIKGQqryVPHKRMNNAFMMHASTSPFYPLFAALNINAKMH 412
Cdd:PRK15400 348 GMS---GGRVEGkvIYETQSTHKLLAAFSQASMIH-----VKGD---VNEETFNEAYMMHTTTSPHYGIVASTETAAAMM 416
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 413 EGVSGRNMWMDCVVNGINARKLIldncQHIRpfvpELVDG---KPWQSYETAQIAVdlrfFQFVPGEHWHSFEGYAENQY 489
Cdd:PRK15400 417 KGNAGKRLINGSIERAIKFRKEI----KRLR----TESDGwffDVWQPDHIDTTEC----WPLRSDSTWHGFKNIDNEHM 484
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 490 FVDPCKLLLTTPGIDaRNGEYEAFGVPATILANFLRENGVVPEKCDLNSILFLLTPAEDMAKLQQLVALLVRFEKLLESD 569
Cdd:PRK15400 485 YLDPIKVTLLTPGMK-KDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKRAFDLN 563
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 570 APLAEVLPSIYKQHEERYAGYTLRQLCQEMHDLYARHNVKQLqkeMFRK-EHFPRVSMNPQEANYAYLRGEVELVRLPDA 648
Cdd:PRK15400 564 LRVKNMLPSLYREDPEFYENMRIQELAQNIHKLIVHHNLPDL---MYRAfEVLPTMVMTPYAAFQKELHGMTEEVYLDEM 640
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 732685371 649 EGRIAAEGALPYPPGVLCVVPGEIWGGA---VLRYFSALEEGINLLPGFAPELQGVYiEEHDGRKQV 712
Cdd:PRK15400 641 VGRVNANMILPYPPGVPLVMPGEMITEEsrpVLEFLQMLCEIGAHYPGFETDIHGAY-RQADGRYTV 706
|
|
| OKR_DC_1_C |
pfam03711 |
Orn/Lys/Arg decarboxylase, C-terminal domain; |
576-706 |
1.15e-69 |
|
Orn/Lys/Arg decarboxylase, C-terminal domain;
Pssm-ID: 461020 [Multi-domain] Cd Length: 132 Bit Score: 223.94 E-value: 1.15e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 576 LPSIYKQHEERYAGYTLRQLCQEMHDLYARHNVKQLQKEMFRkeHFPRVSMNPQEANYAYLRGEVELVRLPDAEGRIAAE 655
Cdd:pfam03711 1 LPELVAAYPERYEGMGLRDLCQEMHDFYRENNVARLQKEAFR--SLPEPAMTPAEAYQELVRGEVELVPLDELEGRIAAV 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 732685371 656 GALPYPPGVLCVVPGEIWG---GAVLRYFSALEEGINLLPGFAPELQGVYIEEH 706
Cdd:pfam03711 79 GVLPYPPGIPLLMPGERFGeenRPILDYLLALEEFDNRFPGFETEIHGVYREED 132
|
|
| OKR_DC_1_N |
pfam03709 |
Orn/Lys/Arg decarboxylase, N-terminal domain; This domain has a flavodoxin-like fold, and is ... |
4-103 |
2.42e-26 |
|
Orn/Lys/Arg decarboxylase, N-terminal domain; This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure.
Pssm-ID: 427454 [Multi-domain] Cd Length: 111 Bit Score: 103.86 E-value: 2.42e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 4 LKIAVSDSCPDCF-TTQRECIYINESR--------NIDVAAIVLSLNDVTCGKLDEIDATGYGIPVFIATENQ--ERVPA 72
Cdd:pfam03709 1 LKIAASRELAEALeRTGREVVDATSTDdllaaietFTDIAAVVLSWDDYAAGLLDEIRRRNFDLPVFLLGETHtsEDVPA 80
|
90 100 110
....*....|....*....|....*....|.
gi 732685371 73 EYLPRISGVFENCESRREFYGRQLETAASHY 103
Cdd:pfam03709 81 DVLRLIDGFIELAEDTPEFIARQIEAAAKKY 111
|
|
| AAT_I |
cd01494 |
Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP) ... |
179-369 |
4.97e-19 |
|
Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V).
Pssm-ID: 99742 [Multi-domain] Cd Length: 170 Bit Score: 85.13 E-value: 4.97e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 179 AQQHAAKVFN--ADKTYFVLNGTSSsNKVVLNALLTPGDLVLFDRNNHKSNHHGALLQAGATPVYLETARNPYGFIGGid 256
Cdd:cd01494 5 LEEKLARLLQpgNDKAVFVPSGTGA-NEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYGGLDV-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732685371 257 ahcfeesylreliaeVAPQRAKEARPFRLAVIQLGTYDGTIYNARQVVDKIGH-LCDYILFDSAWVGYEQFIPMmadcsp 335
Cdd:cd01494 82 ---------------AILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKeYGILLLVDAASAGGASPAPG------ 140
|
170 180 190
....*....|....*....|....*....|....
gi 732685371 336 lllDLNENDPGILVTQSVHKQQAGfSQTSQIHKK 369
Cdd:cd01494 141 ---VLIPEGGADVVTFSLHKNLGG-EGGGVVIVK 170
|
|
| |
