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Conserved domains on  [gi|755341406|gb|AJK06918|]
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hypothetical protein CH55_3198 [Yersinia pestis]

Protein Classification

DUF2500 domain-containing protein( domain architecture ID 10566452)

DUF2500 domain-containing protein similar to Escherichia coli YhhM

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2500 pfam10694
Protein of unknown function (DUF2500); The members of this family are largely confined to the ...
 29-132 1.40e-19

Protein of unknown function (DUF2500); The members of this family are largely confined to the Gammaproteobacteria. The function is not known.


:

Pssm-ID: 431441  Cd Length: 100  Bit Score: 77.62  E-value: 1.40e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755341406   29 QDAENDRAPVRSVQVEVVDKREVLAPnrrsrqrEEIVAEE-KRYEVYFRPLSsgieiknslglsggneiksGSEIKMVLP 107
Cdd:pfam10694  21 QWAKNNAAPVLTVQATVVDKREEVTT-------GGIPGSTsTRYYVTFELES-------------------GDRIEFSVS 74

                          90       100
                  ....*....|....*....|....*
gi 755341406  108 QQEYNRIEQGAQGILRLQGTRYIGF 132
Cdd:pfam10694  75 GEEYGLLAEGDQGKLTYQGTRFLGF 99
 
Name Accession Description Interval E-value
DUF2500 pfam10694
Protein of unknown function (DUF2500); The members of this family are largely confined to the ...
 29-132 1.40e-19

Protein of unknown function (DUF2500); The members of this family are largely confined to the Gammaproteobacteria. The function is not known.


Pssm-ID: 431441  Cd Length: 100  Bit Score: 77.62  E-value: 1.40e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755341406   29 QDAENDRAPVRSVQVEVVDKREVLAPnrrsrqrEEIVAEE-KRYEVYFRPLSsgieiknslglsggneiksGSEIKMVLP 107
Cdd:pfam10694  21 QWAKNNAAPVLTVQATVVDKREEVTT-------GGIPGSTsTRYYVTFELES-------------------GDRIEFSVS 74

                          90       100
                  ....*....|....*....|....*
gi 755341406  108 QQEYNRIEQGAQGILRLQGTRYIGF 132
Cdd:pfam10694  75 GEEYGLLAEGDQGKLTYQGTRFLGF 99
 
Name Accession Description Interval E-value
DUF2500 pfam10694
Protein of unknown function (DUF2500); The members of this family are largely confined to the ...
 29-132 1.40e-19

Protein of unknown function (DUF2500); The members of this family are largely confined to the Gammaproteobacteria. The function is not known.


Pssm-ID: 431441  Cd Length: 100  Bit Score: 77.62  E-value: 1.40e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755341406   29 QDAENDRAPVRSVQVEVVDKREVLAPnrrsrqrEEIVAEE-KRYEVYFRPLSsgieiknslglsggneiksGSEIKMVLP 107
Cdd:pfam10694  21 QWAKNNAAPVLTVQATVVDKREEVTT-------GGIPGSTsTRYYVTFELES-------------------GDRIEFSVS 74

                          90       100
                  ....*....|....*....|....*
gi 755341406  108 QQEYNRIEQGAQGILRLQGTRYIGF 132
Cdd:pfam10694  75 GEEYGLLAEGDQGKLTYQGTRFLGF 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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