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Conserved domains on  [gi|761528016|gb|AJP48335|]
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hypothetical protein PG1C_07400 [Rugosibacter aromaticivorans]

Protein Classification

SlyB family protein( domain architecture ID 10006953)

SlyB family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SlyB COG3133
Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis];
86-208 2.04e-26

Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442367  Cd Length: 152  Bit Score: 98.74  E-value: 2.04e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 761528016  86 APTYSVGHAAAAKCADCGVVEQIRELTVVPEGSGLGGIAGGVVGGLLGNQVGQGRGRSVATVAGVVGGALAGNQIEKTMK 165
Cdd:COG3133   26 GDVYSRGQARQVQTVEYGTVVSVRPVTIQGSNSGLGTVGGAVLGGVAGSQVGGGRGRALATVAGAVAGGVAGNAIEKGVT 105

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 761528016 166 KKQSYEIVVRFEDGTTRTFPSDTTPAWREGDRVRLENGALTPR 208
Cdd:COG3133  106 RTQGVEITVRLDNGETIAVVQEADPQFRVGQRVRVVGGGGTTR 148
PLN02983 super family cl33616
biotin carboxyl carrier protein of acetyl-CoA carboxylase
 37-87 2.11e-03

biotin carboxyl carrier protein of acetyl-CoA carboxylase


The actual alignment was detected with superfamily member PLN02983:

Pssm-ID: 215533 [Multi-domain]  Cd Length: 274  Bit Score: 37.90  E-value: 2.11e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 761528016  37 PNPVAAPATPMVQESVANKPAEPTEPTEPASAS--HAPKSTHKPVKAAV------SPAP 87
Cdd:PLN02983 156 PPPHAMPPASPPAAQPAPSAPASSPPPTPASPPpaKAPKSSHPPLKSPMagtfyrSPAP 214
 
Name Accession Description Interval E-value
SlyB COG3133
Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis];
86-208 2.04e-26

Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442367  Cd Length: 152  Bit Score: 98.74  E-value: 2.04e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 761528016  86 APTYSVGHAAAAKCADCGVVEQIRELTVVPEGSGLGGIAGGVVGGLLGNQVGQGRGRSVATVAGVVGGALAGNQIEKTMK 165
Cdd:COG3133   26 GDVYSRGQARQVQTVEYGTVVSVRPVTIQGSNSGLGTVGGAVLGGVAGSQVGGGRGRALATVAGAVAGGVAGNAIEKGVT 105

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 761528016 166 KKQSYEIVVRFEDGTTRTFPSDTTPAWREGDRVRLENGALTPR 208
Cdd:COG3133  106 RTQGVEITVRLDNGETIAVVQEADPQFRVGQRVRVVGGGGTTR 148
PRK11280 PRK11280
hypothetical protein; Provisional
 133-170 1.62e-09

hypothetical protein; Provisional


Pssm-ID: 183072 [Multi-domain]  Cd Length: 170  Bit Score: 54.63  E-value: 1.62e-09
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 761528016 133 GNQVGQGRGRSVATVAGVVGGALAGNQIEKTMKKKQSY 170
Cdd:PRK11280  79 GHQFGGGRGKDVATVAGALGGGYAGNQIQGGMQERDTY 116
PLN02983 PLN02983
biotin carboxyl carrier protein of acetyl-CoA carboxylase
 37-87 2.11e-03

biotin carboxyl carrier protein of acetyl-CoA carboxylase


Pssm-ID: 215533 [Multi-domain]  Cd Length: 274  Bit Score: 37.90  E-value: 2.11e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 761528016  37 PNPVAAPATPMVQESVANKPAEPTEPTEPASAS--HAPKSTHKPVKAAV------SPAP 87
Cdd:PLN02983 156 PPPHAMPPASPPAAQPAPSAPASSPPPTPASPPpaKAPKSSHPPLKSPMagtfyrSPAP 214
 
Name Accession Description Interval E-value
SlyB COG3133
Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis];
86-208 2.04e-26

Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442367  Cd Length: 152  Bit Score: 98.74  E-value: 2.04e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 761528016  86 APTYSVGHAAAAKCADCGVVEQIRELTVVPEGSGLGGIAGGVVGGLLGNQVGQGRGRSVATVAGVVGGALAGNQIEKTMK 165
Cdd:COG3133   26 GDVYSRGQARQVQTVEYGTVVSVRPVTIQGSNSGLGTVGGAVLGGVAGSQVGGGRGRALATVAGAVAGGVAGNAIEKGVT 105

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 761528016 166 KKQSYEIVVRFEDGTTRTFPSDTTPAWREGDRVRLENGALTPR 208
Cdd:COG3133  106 RTQGVEITVRLDNGETIAVVQEADPQFRVGQRVRVVGGGGTTR 148
YcfJ COG3134
Uncharacterized conserved protein YcfJ, contains glycine zipper 2TM domain [Function unknown];
133-175 6.33e-10

Uncharacterized conserved protein YcfJ, contains glycine zipper 2TM domain [Function unknown];


Pssm-ID: 442368 [Multi-domain]  Cd Length: 176  Bit Score: 56.07  E-value: 6.33e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 761528016 133 GNQVGQGRGRSVATVAGVVGGALAGNQIEKTMKKKQSYEIVVR 175
Cdd:COG3134   85 GNQVGGGSGRKAATAAGAVAGGYAGNQIQGNMQRGDTYYRTVR 127
PRK11280 PRK11280
hypothetical protein; Provisional
 133-170 1.62e-09

hypothetical protein; Provisional


Pssm-ID: 183072 [Multi-domain]  Cd Length: 170  Bit Score: 54.63  E-value: 1.62e-09
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 761528016 133 GNQVGQGRGRSVATVAGVVGGALAGNQIEKTMKKKQSY 170
Cdd:PRK11280  79 GHQFGGGRGKDVATVAGALGGGYAGNQIQGGMQERDTY 116
PLN02983 PLN02983
biotin carboxyl carrier protein of acetyl-CoA carboxylase
 37-87 2.11e-03

biotin carboxyl carrier protein of acetyl-CoA carboxylase


Pssm-ID: 215533 [Multi-domain]  Cd Length: 274  Bit Score: 37.90  E-value: 2.11e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 761528016  37 PNPVAAPATPMVQESVANKPAEPTEPTEPASAS--HAPKSTHKPVKAAV------SPAP 87
Cdd:PLN02983 156 PPPHAMPPASPPAAQPAPSAPASSPPPTPASPPpaKAPKSSHPPLKSPMagtfyrSPAP 214
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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