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Conserved domains on  [gi|768459513|gb|AJT71780|]
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Nud1p [Saccharomyces cerevisiae YJM193]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 11469232)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

Gene Ontology:  GO:0005515
PubMed:  11751054|7583641|14747988
SCOP:  4003523

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
535-817 3.09e-15

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 78.82  E-value: 3.09e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513 535 SNVVQLFCSNNKITSAHCSLAGFHDLECLDLSYNLLNTSLKFLSLCHHLQEVNLSYNSIQSL-EGIGS-SRMKKLNLSNN 612
Cdd:COG4886  113 TNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLpEELGNlTNLKELDLSNN 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513 613 EINGIIDF-------EQLILTNNSV------VGGWLTVEVLDLSNNNIIGVRNINCLPRLKVLNLNGNPLVSIVESSKME 679
Cdd:COG4886  193 QITDLPEPlgnltnlEELDLSGNQLtdlpepLANLTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQLTDLPPLANLT 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513 680 NgtLRALSIKN---TGGALSKLQNYKLDDQFTFPYQNLKILKLDGFAQLSKWQKWPATL--QILEINGGLASSLPRFSSL 754
Cdd:COG4886  273 N--LKTLDLSNnqlTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLlkGLLVTLTTLALSLSLLALL 350

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 768459513 755 KSTNLYSLTIANVRDFTHLPVDLSKELPFLQELHLPGNNLQNAHKLTKTLPRQSVKFLDLRNN 817
Cdd:COG4886  351 TLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVLLLTLALLDAVNT 413
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
535-817 3.09e-15

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 78.82  E-value: 3.09e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513 535 SNVVQLFCSNNKITSAHCSLAGFHDLECLDLSYNLLNTSLKFLSLCHHLQEVNLSYNSIQSL-EGIGS-SRMKKLNLSNN 612
Cdd:COG4886  113 TNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLpEELGNlTNLKELDLSNN 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513 613 EINGIIDF-------EQLILTNNSV------VGGWLTVEVLDLSNNNIIGVRNINCLPRLKVLNLNGNPLVSIVESSKME 679
Cdd:COG4886  193 QITDLPEPlgnltnlEELDLSGNQLtdlpepLANLTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQLTDLPPLANLT 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513 680 NgtLRALSIKN---TGGALSKLQNYKLDDQFTFPYQNLKILKLDGFAQLSKWQKWPATL--QILEINGGLASSLPRFSSL 754
Cdd:COG4886  273 N--LKTLDLSNnqlTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLlkGLLVTLTTLALSLSLLALL 350

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 768459513 755 KSTNLYSLTIANVRDFTHLPVDLSKELPFLQELHLPGNNLQNAHKLTKTLPRQSVKFLDLRNN 817
Cdd:COG4886  351 TLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVLLLTLALLDAVNT 413
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 536-702 7.84e-10

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 59.80  E-value: 7.84e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513 536 NVVQLFCSNNKITSAHcSLAGFHDLECLDLSYNLLnTSLKFLSLCHHLQEVNLSYNSIQSLEGIGS-SRMKKLNLSNNEI 614
Cdd:cd21340    3 RITHLYLNDKNITKID-NLSLCKNLKVLYLYDNKI-TKIENLEFLTNLTHLYLQNNQIEKIENLENlVNLKKLYLGGNRI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513 615 NGIIDFE-------------------QLILTNNSVVGGWLTVEVLDLSNNNIIGVRNINCLPRLKVLNLNGNPLVSIVES 675
Cdd:cd21340   81 SVVEGLEnltnleelhienqrlppgeKLTFDPRSLAALSNSLRVLNISGNNIDSLEPLAPLRNLEQLDASNNQISDLEEL 160

                        170       180
                 ....*....|....*....|....*....
gi 768459513 676 SKMENG--TLRALSIknTGGALSKLQNYK 702
Cdd:cd21340  161 LDLLSSwpSLRELDL--TGNPVCKKPKYR 187
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 637-671 1.48e-04

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 39.92  E-value: 1.48e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 768459513  637 VEVLDLSNNNIIGVRNINCLPRLKVLNLNGNPLVS 671
Cdd:pfam12799   3 LEVLDLSNNQITDIPPLAKLPNLETLDLSGNNKIT 37
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 582-683 2.45e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 41.76  E-value: 2.45e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513 582 HLQEVNLSYNSiqsLEG-------IGSSRMKKLNLSNNEINGiidfeqliltnnSVVGGWLT-VEVLDLSNNNIIG--VR 651
Cdd:PLN00113  94 YIQTINLSNNQ---LSGpipddifTTSSSLRYLNLSNNNFTG------------SIPRGSIPnLETLDLSNNMLSGeiPN 158

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 768459513 652 NINCLPRLKVLNLNGNPLV-----SIVESSKMENGTL 683
Cdd:PLN00113 159 DIGSFSSLKVLDLGGNVLVgkipnSLTNLTSLEFLTL 195
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
535-817 3.09e-15

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 78.82  E-value: 3.09e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513 535 SNVVQLFCSNNKITSAHCSLAGFHDLECLDLSYNLLNTSLKFLSLCHHLQEVNLSYNSIQSL-EGIGS-SRMKKLNLSNN 612
Cdd:COG4886  113 TNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLpEELGNlTNLKELDLSNN 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513 613 EINGIIDF-------EQLILTNNSV------VGGWLTVEVLDLSNNNIIGVRNINCLPRLKVLNLNGNPLVSIVESSKME 679
Cdd:COG4886  193 QITDLPEPlgnltnlEELDLSGNQLtdlpepLANLTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQLTDLPPLANLT 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513 680 NgtLRALSIKN---TGGALSKLQNYKLDDQFTFPYQNLKILKLDGFAQLSKWQKWPATL--QILEINGGLASSLPRFSSL 754
Cdd:COG4886  273 N--LKTLDLSNnqlTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLlkGLLVTLTTLALSLSLLALL 350

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 768459513 755 KSTNLYSLTIANVRDFTHLPVDLSKELPFLQELHLPGNNLQNAHKLTKTLPRQSVKFLDLRNN 817
Cdd:COG4886  351 TLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVLLLTLALLDAVNT 413
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 536-702 7.84e-10

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 59.80  E-value: 7.84e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513 536 NVVQLFCSNNKITSAHcSLAGFHDLECLDLSYNLLnTSLKFLSLCHHLQEVNLSYNSIQSLEGIGS-SRMKKLNLSNNEI 614
Cdd:cd21340    3 RITHLYLNDKNITKID-NLSLCKNLKVLYLYDNKI-TKIENLEFLTNLTHLYLQNNQIEKIENLENlVNLKKLYLGGNRI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513 615 NGIIDFE-------------------QLILTNNSVVGGWLTVEVLDLSNNNIIGVRNINCLPRLKVLNLNGNPLVSIVES 675
Cdd:cd21340   81 SVVEGLEnltnleelhienqrlppgeKLTFDPRSLAALSNSLRVLNISGNNIDSLEPLAPLRNLEQLDASNNQISDLEEL 160

                        170       180
                 ....*....|....*....|....*....
gi 768459513 676 SKMENG--TLRALSIknTGGALSKLQNYK 702
Cdd:cd21340  161 LDLLSSwpSLRELDL--TGNPVCKKPKYR 187
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 521-672 9.38e-09

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 56.72  E-value: 9.38e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513 521 NLSDNEMNTLEGIPS--NVVQLFCSNNKITSAhCSLAGFHDLECLDLSYNLLnTSLKFLSLCHHLQEVNLSYNSIQ---- 594
Cdd:cd21340   30 YLYDNKITKIENLEFltNLTHLYLQNNQIEKI-ENLENLVNLKKLYLGGNRI-SVVEGLENLTNLEELHIENQRLPpgek 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513 595 ------SLEGIGSSrMKKLNLSNNEINGIIDFEqlILTNnsvvggwltVEVLDLSNNNIIGVRNI----NCLPRLKVLNL 664
Cdd:cd21340  108 ltfdprSLAALSNS-LRVLNISGNNIDSLEPLA--PLRN---------LEQLDASNNQISDLEELldllSSWPSLRELDL 175


                 ....*...
gi 768459513 665 NGNPLVSI 672
Cdd:cd21340  176 TGNPVCKK 183
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
563-858 5.65e-05

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 46.47  E-value: 5.65e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513 563 LDLSYNLLNTSLKFLSLCHHLQEVNLSYNSIQSLEGIGSSRMKKLNLSNNEINGIIDFEQLILTNNSVVGGWLTVEVLDL 642
Cdd:COG4886   24 LILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDL 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513 643 SNNNiigvrNINCLPRLKVLNLNGNPLVSIVES-SKMENgtLRALSIKNTG--------GALSKLQNYKLDD-QFT---- 708
Cdd:COG4886  104 SGNE-----ELSNLTNLESLDLSGNQLTDLPEElANLTN--LKELDLSNNQltdlpeplGNLTNLKSLDLSNnQLTdlpe 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513 709 --FPYQNLKILKLDG--FAQLSKWQKWPATLQILEINGGLASSLPR-FSSLksTNLYSLTIANVRdFTHLPvDLSKeLPF 783
Cdd:COG4886  177 elGNLTNLKELDLSNnqITDLPEPLGNLTNLEELDLSGNQLTDLPEpLANL--TNLETLDLSNNQ-LTDLP-ELGN-LTN 251

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768459513 784 LQELHLPGNNLQNahkLTKTLPRQSVKFLDLRNNPITTPRHDRASTSLHYRQLLQLAGLCQQQCPALATLWLDDT 858
Cdd:COG4886  252 LEELDLSNNQLTD---LPPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTL 323
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 523-691 1.14e-04

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 45.04  E-value: 1.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513 523 SDNEMntlEGIPSNV----------VQLFC---SNNKITSAHC----SLAGFHDLECLDLSYNLL-NTSLKFL--SLCHH 582
Cdd:cd00116   59 SLNET---GRIPRGLqsllqgltkgCGLQEldlSDNALGPDGCgvleSLLRSSSLQELKLNNNGLgDRGLRLLakGLKDL 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513 583 ---LQEVNLSYNSI--QSLEGIGS-----SRMKKLNLSNNEIN--GIIDFEQlILTNNSvvggwlTVEVLDLSNNniiGV 650
Cdd:cd00116  136 ppaLEKLVLGRNRLegASCEALAKalranRDLKELNLANNGIGdaGIRALAE-GLKANC------NLEVLDLNNN---GL 205

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 768459513 651 RNINC---------LPRLKVLNLNGNPLVS-----IVESSKMENGTLRALSIKNT 691
Cdd:cd00116  206 TDEGAsalaetlasLKSLEVLNLGDNNLTDagaaaLASALLSPNISLLTLSLSCN 260
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 637-671 1.48e-04

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 39.92  E-value: 1.48e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 768459513  637 VEVLDLSNNNIIGVRNINCLPRLKVLNLNGNPLVS 671
Cdd:pfam12799   3 LEVLDLSNNQITDIPPLAKLPNLETLDLSGNNKIT 37
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 572-799 3.15e-04

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 42.85  E-value: 3.15e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513 572 TSLKFLSLCHHLQEVNLSYNSIQSLEGIGssrmkklNLSNneingiidfeqliLTNnsvvggwltvevLDLSNNNIIGVR 651
Cdd:cd21340   15 TKIDNLSLCKNLKVLYLYDNKITKIENLE-------FLTN-------------LTH------------LYLQNNQIEKIE 62

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513 652 NINCLPRLKVLNLNGNpLVSIVESskMENGT-LRALSIKNtggalsklQNYKLDDQFTFPYQNLKILKldgfaqlskwqk 730
Cdd:cd21340   63 NLENLVNLKKLYLGGN-RISVVEG--LENLTnLEELHIEN--------QRLPPGEKLTFDPRSLAALS------------ 119

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 768459513 731 wpATLQILEINGGLASSLPRFSSLKstNLYSLTIAN--VRDFTHLPVDLSKeLPFLQELHLPGNNLQNAHK 799
Cdd:cd21340  120 --NSLRVLNISGNNIDSLEPLAPLR--NLEQLDASNnqISDLEELLDLLSS-WPSLRELDLTGNPVCKKPK 185
LRR_8 pfam13855
Leucine rich repeat;
602-669 6.55e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 38.66  E-value: 6.55e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513  602 SRMKKLNLSNNEINGIIDfeqliltnnSVVGGWLTVEVLDLSNNNIIGVRN--INCLPRLKVLNLNGNPL 669
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDD---------GAFKGLSNLKVLDLSNNLLTTLSPgaFSGLPSLRYLDLSGNRL 61
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 582-683 2.45e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 41.76  E-value: 2.45e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513 582 HLQEVNLSYNSiqsLEG-------IGSSRMKKLNLSNNEINGiidfeqliltnnSVVGGWLT-VEVLDLSNNNIIG--VR 651
Cdd:PLN00113  94 YIQTINLSNNQ---LSGpipddifTTSSSLRYLNLSNNNFTG------------SIPRGSIPnLETLDLSNNMLSGeiPN 158

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 768459513 652 NINCLPRLKVLNLNGNPLV-----SIVESSKMENGTL 683
Cdd:PLN00113 159 DIGSFSSLKVLDLGGNVLVgkipnSLTNLTSLEFLTL 195
PLN03150 PLN03150
hypothetical protein; Provisional
 594-669 4.64e-03

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 40.57  E-value: 4.64e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768459513 594 QSLEG-IGS--SRMKKL---NLSNNEINGIIDFEqliltnnsvVGGWLTVEVLDLSNNNIIGV--RNINCLPRLKVLNLN 665
Cdd:PLN03150 428 QGLRGfIPNdiSKLRHLqsiNLSGNSIRGNIPPS---------LGSITSLEVLDLSYNSFNGSipESLGQLTSLRILNLN 498


                 ....
gi 768459513 666 GNPL 669
Cdd:PLN03150 499 GNSL 502
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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