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Conserved domains on  [gi|805410984|gb|AKB86296|]
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plasmid stabilization system family protein (plasmid) [Yersinia pestis]

Protein Classification

type II toxin-antitoxin system RelE/ParE family toxin( domain architecture ID 10007814)

type II toxin-antitoxin (TA) system RelE/ParE family toxin is the RelE/ParE-like toxin component of a type II toxin-antitoxin system, its activity is attenuated by interaction with its cognate antitoxin

Gene Ontology:  GO:0110001|GO:0090729
PubMed:  20143871|20487277|28279904|15718296

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ParE COG3668
Plasmid stabilization system protein ParE [Mobilome: prophages, transposons];
5-101 9.38e-07

Plasmid stabilization system protein ParE [Mobilome: prophages, transposons];


:

Pssm-ID: 442885  Cd Length: 96  Bit Score: 43.34  E-value: 9.38e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805410984   5 IQYTRTVKTCIDDIASHLRHIESEP--KEVISGIIEHFEkRVSDFPLGCQVCPELLKIGcakYRECNTPdGYRVLYSVED 82
Cdd:COG3668    3 VRWTPEAEADLEEIYDYIAEDWGPEaaERYLDEIEEAIE-LLAEFPELGRPRPELRVPG---LRELVVG-PYVIFYRVDD 77

                         90
                 ....*....|....*....
gi 805410984  83 NVITAHAILSHRQDIQNLL 101
Cdd:COG3668   78 DTVEILRVLHGRRDLPALL 96
 
Name Accession Description Interval E-value
ParE COG3668
Plasmid stabilization system protein ParE [Mobilome: prophages, transposons];
5-101 9.38e-07

Plasmid stabilization system protein ParE [Mobilome: prophages, transposons];


Pssm-ID: 442885  Cd Length: 96  Bit Score: 43.34  E-value: 9.38e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805410984   5 IQYTRTVKTCIDDIASHLRHIESEP--KEVISGIIEHFEkRVSDFPLGCQVCPELLKIGcakYRECNTPdGYRVLYSVED 82
Cdd:COG3668    3 VRWTPEAEADLEEIYDYIAEDWGPEaaERYLDEIEEAIE-LLAEFPELGRPRPELRVPG---LRELVVG-PYVIFYRVDD 77

                         90
                 ....*....|....*....
gi 805410984  83 NVITAHAILSHRQDIQNLL 101
Cdd:COG3668   78 DTVEILRVLHGRRDLPALL 96
 
Name Accession Description Interval E-value
ParE COG3668
Plasmid stabilization system protein ParE [Mobilome: prophages, transposons];
5-101 9.38e-07

Plasmid stabilization system protein ParE [Mobilome: prophages, transposons];


Pssm-ID: 442885  Cd Length: 96  Bit Score: 43.34  E-value: 9.38e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805410984   5 IQYTRTVKTCIDDIASHLRHIESEP--KEVISGIIEHFEkRVSDFPLGCQVCPELLKIGcakYRECNTPdGYRVLYSVED 82
Cdd:COG3668    3 VRWTPEAEADLEEIYDYIAEDWGPEaaERYLDEIEEAIE-LLAEFPELGRPRPELRVPG---LRELVVG-PYVIFYRVDD 77

                         90
                 ....*....|....*....
gi 805410984  83 NVITAHAILSHRQDIQNLL 101
Cdd:COG3668   78 DTVEILRVLHGRRDLPALL 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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