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Conserved domains on  [gi|811640891|gb|AKE29367|]
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ATP synthase F0F1 subunit epsilon [Thermotoga maritima MSB8]

Protein Classification

F0F1 ATP synthase subunit epsilon( domain architecture ID 10793815)

F0F1 ATP synthase subunit epsilon is part of the catalytic core of the F-type ATPase that produces ATP from ADP in the presence of a proton gradient across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
atpC PRK13451
F0F1 ATP synthase subunit epsilon; Provisional
 1-93 3.05e-54

F0F1 ATP synthase subunit epsilon; Provisional


:

Pssm-ID: 172059  Cd Length: 101  Bit Score: 164.19  E-value: 3.05e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 811640891   1 MKVKIVTPYGIVYDRESDFISFRTVEGSMGILPRRAPIVTQLSVCDVKIKSGDDEYHLKVAGGFLLCDGKDVIIITEEAG 80
Cdd:PRK13451   1 MKVKIVTPYGIVYDRESDFVSFRTVEGEMGILPRRAPIIAKLSVCDVKIKSGDDEYEYKVADGFLHCDGKNVIIITEEAG 80

                         90
                 ....*....|...
gi 811640891  81 REEDISPDRFMEA 93
Cdd:PRK13451  81 REEEISPHRYLGA 93
 
Name Accession Description Interval E-value
atpC PRK13451
F0F1 ATP synthase subunit epsilon; Provisional
 1-93 3.05e-54

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 172059  Cd Length: 101  Bit Score: 164.19  E-value: 3.05e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 811640891   1 MKVKIVTPYGIVYDRESDFISFRTVEGSMGILPRRAPIVTQLSVCDVKIKSGDDEYHLKVAGGFLLCDGKDVIIITEEAG 80
Cdd:PRK13451   1 MKVKIVTPYGIVYDRESDFVSFRTVEGEMGILPRRAPIIAKLSVCDVKIKSGDDEYEYKVADGFLHCDGKNVIIITEEAG 80

                         90
                 ....*....|...
gi 811640891  81 REEDISPDRFMEA 93
Cdd:PRK13451  81 REEEISPHRYLGA 93
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 1-93 1.45e-26

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 94.87  E-value: 1.45e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 811640891   1 MKVKIVTPYGIVYDRESDFISFRTVEGSMGILPRRAPIVTQLSVCDVKIKSGDDEYH-LKVAGGFLLCDGKDVIIITEEA 79
Cdd:COG0355    1 LKLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEDGEEEyFAVSGGFLEVQPNKVTILADTA 80

                         90
                 ....*....|....
gi 811640891  80 GREEDISPDRFMEA 93
Cdd:COG0355   81 ERAEDIDVERAEEA 94
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 1-93 2.23e-25

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 91.80  E-value: 2.23e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 811640891   1 MKVKIVTPYGIVYDRESDFISFRTVEGSMGILPRRAPIVTQLSVCDVKIKSGDDEYH-LKVAGGFLLCDGKDVIIITEEA 79
Cdd:cd12152    1 LKLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEDGEEKyFAVSGGFLEVTPNRVTILADEA 80

                         90
                 ....*....|....
gi 811640891  80 GREEDISPDRFMEA 93
Cdd:cd12152   81 ERPEDIDVERAEEA 94
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 1-79 1.59e-21

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 80.56  E-value: 1.59e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 811640891    1 MKVKIVTPYGIVYDRESDFISFRTVEGSMGILPRRAPIVTQLSVCDVKIKSGDD-EYHLKVAGGFLLCDGKDVIIITEEA 79
Cdd:pfam02823   1 LKLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTEDGeEEYIAVSGGFLEVQPNKVTILADSA 80
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 1-93 8.11e-17

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 69.98  E-value: 8.11e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 811640891    1 MKVKIVTPYGIVYDRESDFISFRTVEGSMGILPRRAPIVTQLSVCDVKI-KSGDDEYHLKVAGGFLLCDGKDVIIITEEA 79
Cdd:TIGR01216   2 LKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIrKLGDDWEHIAVSGGFAEVQPDKVTILADGA 81

                          90
                  ....*....|....
gi 811640891   80 GREEDISPDRFMEA 93
Cdd:TIGR01216  82 VFADDIDEAEAEKA 95
 
Name Accession Description Interval E-value
atpC PRK13451
F0F1 ATP synthase subunit epsilon; Provisional
 1-93 3.05e-54

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 172059  Cd Length: 101  Bit Score: 164.19  E-value: 3.05e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 811640891   1 MKVKIVTPYGIVYDRESDFISFRTVEGSMGILPRRAPIVTQLSVCDVKIKSGDDEYHLKVAGGFLLCDGKDVIIITEEAG 80
Cdd:PRK13451   1 MKVKIVTPYGIVYDRESDFVSFRTVEGEMGILPRRAPIIAKLSVCDVKIKSGDDEYEYKVADGFLHCDGKNVIIITEEAG 80

                         90
                 ....*....|...
gi 811640891  81 REEDISPDRFMEA 93
Cdd:PRK13451  81 REEEISPHRYLGA 93
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 1-93 1.45e-26

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 94.87  E-value: 1.45e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 811640891   1 MKVKIVTPYGIVYDRESDFISFRTVEGSMGILPRRAPIVTQLSVCDVKIKSGDDEYH-LKVAGGFLLCDGKDVIIITEEA 79
Cdd:COG0355    1 LKLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEDGEEEyFAVSGGFLEVQPNKVTILADTA 80

                         90
                 ....*....|....
gi 811640891  80 GREEDISPDRFMEA 93
Cdd:COG0355   81 ERAEDIDVERAEEA 94
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 1-93 2.23e-25

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 91.80  E-value: 2.23e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 811640891   1 MKVKIVTPYGIVYDRESDFISFRTVEGSMGILPRRAPIVTQLSVCDVKIKSGDDEYH-LKVAGGFLLCDGKDVIIITEEA 79
Cdd:cd12152    1 LKLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEDGEEKyFAVSGGFLEVTPNRVTILADEA 80

                         90
                 ....*....|....
gi 811640891  80 GREEDISPDRFMEA 93
Cdd:cd12152   81 ERPEDIDVERAEEA 94
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 1-79 1.59e-21

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 80.56  E-value: 1.59e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 811640891    1 MKVKIVTPYGIVYDRESDFISFRTVEGSMGILPRRAPIVTQLSVCDVKIKSGDD-EYHLKVAGGFLLCDGKDVIIITEEA 79
Cdd:pfam02823   1 LKLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTEDGeEEYIAVSGGFLEVQPNKVTILADSA 80
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 1-93 1.79e-17

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 72.10  E-value: 1.79e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 811640891   1 MKVKIVTPYGIVYDRESDFISFRTVEGSMGILPRRAPIVTQLSVCDVKIK-SGDDEYHLKVAGGFLLCDGKDVIIITEEA 79
Cdd:PRK00571   4 LTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKkDDGEEEVIAVSGGFLEVQPDKVTVLADSA 83

                         90
                 ....*....|....
gi 811640891  80 GREEDISPDRFMEA 93
Cdd:PRK00571  84 ERADDIDEARAEEA 97
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 1-93 8.11e-17

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 69.98  E-value: 8.11e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 811640891    1 MKVKIVTPYGIVYDRESDFISFRTVEGSMGILPRRAPIVTQLSVCDVKI-KSGDDEYHLKVAGGFLLCDGKDVIIITEEA 79
Cdd:TIGR01216   2 LKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIrKLGDDWEHIAVSGGFAEVQPDKVTILADGA 81

                          90
                  ....*....|....
gi 811640891   80 GREEDISPDRFMEA 93
Cdd:TIGR01216  82 VFADDIDEAEAEKA 95
atpC PRK13446
F0F1 ATP synthase subunit epsilon; Provisional
 1-89 4.69e-15

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184056 [Multi-domain]  Cd Length: 136  Bit Score: 65.75  E-value: 4.69e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 811640891   1 MKVKIVTPYGIVYDRESDFISFRTVEGSMGILPRRAPIVTQLSVCDVKIKSGDDEYHLKVAGGFLLCDGKDVIIITEEAG 80
Cdd:PRK13446   5 LKLEIVTPEKKVLSEEVDEVGAPGVLGEFGVLPGHAPFLTALKIGELTYKKGGKTHYVAVNGGFAEVSNNKVTVLAETAE 84


                 ....*....
gi 811640891  81 REEDISPDR 89
Cdd:PRK13446  85 RAEEIDVER 93
atpE CHL00063
ATP synthase CF1 epsilon subunit
 1-88 6.24e-14

ATP synthase CF1 epsilon subunit


Pssm-ID: 214351 [Multi-domain]  Cd Length: 134  Bit Score: 62.96  E-value: 6.24e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 811640891   1 MKVKIVTPYGIVYDRESDFISFRTVEGSMGILPRRAPIVTQLSVCDVKIKSGDDEYHLKVAGGFLLCDGKDVIIITEEAG 80
Cdd:CHL00063   3 LNLRVLTPNRIVWDSEVEEIILPTNSGQIGVLPNHAPIATALDIGVLRIRLNDQWLTMALMGGFARIGNNEITILVNDAE 82


                 ....*...
gi 811640891  81 REEDISPD 88
Cdd:CHL00063  83 KGSDIDPQ 90
atpC PRK13444
F0F1 ATP synthase subunit epsilon; Provisional
 1-93 1.10e-11

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139576 [Multi-domain]  Cd Length: 127  Bit Score: 56.81  E-value: 1.10e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 811640891   1 MKVKIVTPYGIVYDRESDFISFRTVEGSMGILPRRAPIVTQLSVCDVKIKSGDDEYHLKVAGGFLLCDGKDVIIITEEAG 80
Cdd:PRK13444   6 LTVSVISPEKILYKGEVDSLIVPGSEGFFGILPNHAPLVATLGIGLLEIRKGEKLKRISVEGGFCEVKDNQISILTDHGA 85

                         90
                 ....*....|...
gi 811640891  81 REEDISPDRFMEA 93
Cdd:PRK13444  86 LKEDIDHEHEKKL 98
atpC PRK14735
F0F1 ATP synthase subunit epsilon; Provisional
 1-107 4.04e-09

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173197 [Multi-domain]  Cd Length: 139  Bit Score: 50.38  E-value: 4.04e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 811640891   1 MKVKIVTPYGIVYDRESDFISFRTVEGSMGILPRRAPIVTQLSVCDVKIKSGDDEYHLKVAGGFLLCDGKDVIIITEEAG 80
Cdd:PRK14735   3 IHLEIVTAERVVLSDDVDMISAPTKDGRVGILPRHAPLLTILEPGELDIVKNGVRTPFAISGGFMEVLPHRVTILADTAE 82

                         90       100
                 ....*....|....*....|....*..
gi 811640891  81 REEDISPDRFMEARERVERVRRFFQSS 107
Cdd:PRK14735  83 RADEIDEARAEQARAEAEQRRRERQSE 109
atpC PRK13442
F0F1 ATP synthase subunit epsilon; Provisional
 1-79 4.91e-08

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184055 [Multi-domain]  Cd Length: 89  Bit Score: 46.55  E-value: 4.91e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 811640891   1 MKVKIVTPYGIVYDRESDFISFRTVEGSMGILPRRAPIVTQLSVCDVKI-KSGDDEYHLKVAGGFLLCDGKDVIIITEEA 79
Cdd:PRK13442   6 LHVNIVAADRPVWSGEATMVVARTTEGDIGILPGHEPLLGVLESGTVTVvTPGGERISAAVDGGFISFDSNKLTVLAERA 85
PRK13447 PRK13447
F0F1 ATP synthase subunit epsilon; Provisional
 1-79 6.38e-07

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184057 [Multi-domain]  Cd Length: 136  Bit Score: 44.61  E-value: 6.38e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 811640891   1 MKVKIVTPYGIVYDrESDFISFRTVE--GSMGILPRRAPIVTQLSVCDVKIKSGDD-EYHLKVAGGFL-LCDGKDVIIIT 76
Cdd:PRK13447   1 LRLTIATPLAVVVD-ELDIVSLRAEDasGGFGILPGHADFLTVLRASVVRWRRADGaTHYCAVRGGVLrVTGGARVEIAC 79


                 ...
gi 811640891  77 EEA 79
Cdd:PRK13447  80 REA 82
atpC PRK14736
F0F1 ATP synthase subunit epsilon; Provisional
 5-89 1.15e-06

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173198 [Multi-domain]  Cd Length: 133  Bit Score: 44.01  E-value: 1.15e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 811640891   5 IVTPYGIVYDRESDFISFRTVEGSMGILPRRAPIVTQLSVCDVKIKsgDDEYHLK---VAGGFLLCDGKDVIIITEEAGR 81
Cdd:PRK14736   8 LVGPERTLYSGEVEAVQLPGSEGEMTVLPGHAPVLTTLKVGVITVT--ETTGNGKriyVRGGFAEIGPTSVTVLAERAAP 85


                 ....*...
gi 811640891  82 EEDISPDR 89
Cdd:PRK14736  86 VEELTPEM 93
atpC PRK13452
F0F1 ATP synthase subunit epsilon; Provisional
 1-86 2.75e-06

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 106409 [Multi-domain]  Cd Length: 145  Bit Score: 43.20  E-value: 2.75e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 811640891   1 MKVKIVTPYGIVYDRESDFISFRTVEGSMGILPRRAPIVTQLSVCDVKIKSGDDEYHLKVAGGFLLCDGKDVIIITEEAG 80
Cdd:PRK13452   6 LKVDVVSPLGSVFKGEADMVSLRGSAGEMGIAYGHTELLSTLPAGVVNVRKDQHTDVLYVSGGIVEVTPTRVTIMVDDME 85


                 ....*.
gi 811640891  81 REEDIS 86
Cdd:PRK13452  86 RAENLN 91
atpC PRK13450
F0F1 ATP synthase subunit epsilon; Provisional
 1-93 6.50e-06

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184059 [Multi-domain]  Cd Length: 132  Bit Score: 42.06  E-value: 6.50e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 811640891   1 MKVKIVTPYGIVYDRESDFISFRTVEGSMGILPRRAPIVTQLSVCDVKI--KSGDDEYhLKVAGGFLLCDGKDVIIITEE 78
Cdd:PRK13450   4 IKLTILTPEKNFYIGEVKEVITEGLDGDIAILPNHVPLITYLKPTITKIidENGEKKK-IFTSSGVLKVENNEVYILCDA 82

                         90
                 ....*....|....*
gi 811640891  79 AGREEDISPDRFMEA 93
Cdd:PRK13450  83 SEWPEEIDIKRAENA 97
atpC PRK01474
F0F1 ATP synthase subunit epsilon; Validated
 3-79 2.58e-05

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 100879  Cd Length: 112  Bit Score: 39.86  E-value: 2.58e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 811640891   3 VKIVTPYGIVYDRESDFISFRTVEGSMGILPRRAPIVTQLSVCDVKIKSgDDEYHLK----VAGGFLLCDGKDVIIITEE 78
Cdd:PRK01474   7 VKIITPLSIAFEKQAKMVTMPGEEGMFGVLPSHVPMIVSLKAGLVQVYI-DDMHKSEntylISGGVTEVTGNYINIATET 85


                 .
gi 811640891  79 A 79
Cdd:PRK01474  86 A 86
atpC PRK13449
ATP synthase F1 subunit epsilon;
5-82 2.39e-03

ATP synthase F1 subunit epsilon;


Pssm-ID: 184058 [Multi-domain]  Cd Length: 88  Bit Score: 34.36  E-value: 2.39e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 811640891   5 IVTPYGIVYDRESDFISFRTVEGSMGILPRRAPIVTQLSVCDVKIKSGDD----EYHlkVAGGFLLCDGKDVIIITEEAG 80
Cdd:PRK13449   8 LVTPERLLRSGEVDMVVVPGTEGDFGVLAGHAPFMTTLREGEVTVYSSDGaapeVFH--VQGGFAEVNEKGLTILAEHAV 85


                 ..
gi 811640891  81 RE 82
Cdd:PRK13449  86 EA 87
PRK06228 PRK06228
F0F1 ATP synthase subunit epsilon; Validated
 1-86 8.47e-03

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 235750 [Multi-domain]  Cd Length: 131  Bit Score: 33.37  E-value: 8.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 811640891   1 MKVKIVTPYGIVYDRES-DFISFRTVEGSMGILPRRAPIVTQLSVCDVKIKSGDD-EYHLKVAGGFLLCDGKDVIIITEE 78
Cdd:PRK06228   3 MNLKILLPFEVFAEKKGvTRIVAETREGSFGLLPHRLDCVAALVPGILVYETEAEgEVYVAVDEGILVKTGPDVLVSVRN 82


                 ....*...
gi 811640891  79 AGREEDIS 86
Cdd:PRK06228  83 AIGGTDLG 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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