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Conserved domains on  [gi|828177905|gb|AKK25256|]
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crystallin beta A4, partial [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Crystall super family cl02528
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ...
 6-48 1.56e-13

Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.


The actual alignment was detected with superfamily member smart00247:

Pssm-ID: 470604  Cd Length: 82  Bit Score: 57.90  E-value: 1.56e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 828177905    6 RLTIFEQENFLGKKGELSDDYPSLQAMGWEgNEVGSFHVHSGA 48
Cdd:smart00247  1 KITLYEDENFQGRSYELSDDCPSLQDYGSR-DNVSSVRVESGC 42
 
Name Accession Description Interval E-value
XTALbg smart00247
Beta/gamma crystallins; Beta/gamma crystallins
 6-48 1.56e-13

Beta/gamma crystallins; Beta/gamma crystallins


Pssm-ID: 214583  Cd Length: 82  Bit Score: 57.90  E-value: 1.56e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 828177905    6 RLTIFEQENFLGKKGELSDDYPSLQAMGWEgNEVGSFHVHSGA 48
Cdd:smart00247  1 KITLYEDENFQGRSYELSDDCPSLQDYGSR-DNVSSVRVESGC 42
Crystall pfam00030
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ...
 6-48 1.12e-12

Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.


Pssm-ID: 459639  Cd Length: 82  Bit Score: 55.96  E-value: 1.12e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 828177905   6 RLTIFEQENFLGKKGELSDDYPSLQAMGWeGNEVGSFHVHSGA 48
Cdd:pfam00030  1 KIVLYEKENFQGRSIELTDDCPSLQERGF-NSRVNSIRVLSGA 42
 
Name Accession Description Interval E-value
XTALbg smart00247
Beta/gamma crystallins; Beta/gamma crystallins
 6-48 1.56e-13

Beta/gamma crystallins; Beta/gamma crystallins


Pssm-ID: 214583  Cd Length: 82  Bit Score: 57.90  E-value: 1.56e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 828177905    6 RLTIFEQENFLGKKGELSDDYPSLQAMGWEgNEVGSFHVHSGA 48
Cdd:smart00247  1 KITLYEDENFQGRSYELSDDCPSLQDYGSR-DNVSSVRVESGC 42
Crystall pfam00030
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ...
 6-48 1.12e-12

Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.


Pssm-ID: 459639  Cd Length: 82  Bit Score: 55.96  E-value: 1.12e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 828177905   6 RLTIFEQENFLGKKGELSDDYPSLQAMGWeGNEVGSFHVHSGA 48
Cdd:pfam00030  1 KIVLYEKENFQGRSIELTDDCPSLQERGF-NSRVNSIRVLSGA 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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