|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
1-625 |
0e+00 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 1088.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 1 MTELARKIVAGVGGADNIVSLMHCATRLRFKLKDESKAQAEVLKKTPGIIMVVESGGQFQVVIGNHVADVFLAVNSVAGL 80
Cdd:PRK09824 3 YTELAREIVAGVGGADNIVSLMHCATRLRFKLKDNSKAQAEVLKKNPGVIMVVESGGQFQVVIGNHVADVFLAVNSVAGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 81 DEKAQQAPENDDKGNLLNRFVYVISGIFTPLIGLMAATGILKGMLALALTFQWTTEQSGTYLILFSASDALFWFFPIILG 160
Cdd:PRK09824 83 GEKAQQAPENDKKGNLLNRFIDVISGIFTPLIGVMAATGILKGMLALALTFGWTTEQSGTYKILFAASDALFFFFPIILG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 161 YTAGKRFGGNPFTAMVIGGALVHPLILTAFENGQKADALGLDFLGIPVTLLNYSSSVIPIIFSAWLCSILERRLNAWLPS 240
Cdd:PRK09824 163 YTAGKKFGGNPFTAMVIGGALVHPLMIAAFEAGQKADALGLDFLGIPVTLLNYSSSVIPIIFSAWLCSILERRLNAWLPS 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 241 AIKNFFTPLLCLMVITPVTFLLVGPLSTWISELIAAGYLWLYQAVPAFAGAVMGGFWQIFVMFGLHWGLVPLCINNFTVL 320
Cdd:PRK09824 243 AIKNFFTPLLCLMVIVPLTFLLIGPLATWLSELLAAGYQWLYQAVPAFAGAVMGAFWQVFVIFGLHWGLVPLMINNLTVL 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 321 GYDTMIPLLMPAIMAQVGAALGVFLCERDAQKKVVAGSAALTSLFGITEPAVYGVNLPRKYPFVIACISGALGATIIGYA 400
Cdd:PRK09824 323 GHDTMLPLLMPAVMAQVGAALGVFLCTRDAQKKVVAGSAFLAGLFGITEPAVYGVNLPLKRPFIFGCISGALGAAIIGYA 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 401 QTKVYSFGLPSIFTFMQTIPSTGIDFTVWASVIGGVIAIGCAFVGTVMLHFITAKRQPAQGAPQEKTPEVITPPEQGGIC 480
Cdd:PRK09824 403 QTKVYSFGLPSIFTFMQTIPPTGIDFTVWASVIGTVIAIGCAFVGTVMFGFPTAKRQPAQVAPQEKTPEVITPPEQGGIC 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 481 SPMTGEIVPLIHVADTTFASGLLGKGIAILPSVGEVRSPVAGRIASLFATLHAIGIESDDGVEILIHVGIDTVKLDGKFF 560
Cdd:PRK09824 483 SPMTGEVVPLEQVADTTFASGLLGKGIAILPSVGEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTVKLDGKFF 562
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 937518099 561 SAHVNVGDKVNTGDRLISFDIPAIREAGFDLTTPVLISNSDDFTDVLPHGTAQISAGEPLLSIIR 625
Cdd:PRK09824 563 TAHVNVGDKVNTGDLLIEFDIPAIREAGYDLTTPVLISNSDDYTDVLPHATAQVSAGEPLLSIIR 627
|
|
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
3-624 |
0e+00 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 640.17 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 3 ELARKIVAGVGGADNIVSLMHCATRLRFKLKDESKAQAEVLKKTPGIIMVVESGGQFQVVIGNHVADVFLAVNSVAGLDE 82
Cdd:TIGR01995 3 DLAKAIIENVGGKENIESVTHCATRLRFTLKDDAKADTEKLKKISGVITVVKSGGQYQVVIGNDVNDVYQALMDVLGLDD 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 83 KAQQApENDDKGNLLNRFVYVISGIFTPLIGLMAATGILKGMLALALTFQWTTEQSGTYLILFSASDALFWFFPIILGYT 162
Cdd:TIGR01995 83 QAEDD-DSKGKKSILNKLIDLISGVFTPLLPALAGAGLLKAVLTLLTMTGLISADSQTYQILNAMGDAVFYFLPILLAIT 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 163 AGKRFGGNPFTAMVIGGALVHPLILTafengQKADALGLDFLGIPVTLLNYSSSVIPIIFSAWLCSILERRLNAWLPSAI 242
Cdd:TIGR01995 162 AAKRFKVNPYLAAAIGAALLHPTLVA-----MVGSGKPVTFFGIPVTLMSYSSSVIPVILAVWLMSYVEKFLKKVIPGAL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 243 KNFFTPLLCLMVITPVTFLLVGPLSTWISELIAAGYLWLYQAVPAFAGAVMGGFWQIFVMFGLHWGLVPLCINNFTVLGY 322
Cdd:TIGR01995 237 KNFLTPLLVMLITVPLTLLIIGPLGNYAGEGISSGILFLYEVSPWLAGALLAALWPVLVMFGLHWAMIPIVINNIATQGF 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 323 DTMI-PLLMPAIMAQVGAALGVFLCERDAQKKVVAGSAALTSLFGITEPAVYGVNLPRKYPFVIACISGALGATIIGYAQ 401
Cdd:TIGR01995 317 DPLIlPASLAANFAQGGAALAVMLRTKNKKLKALAGSATISALFGITEPAIYGVNLPLKKPFYAAMIGGAVGGAIIGIGS 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 402 TKVYSFGLPSIFTFMQTI-PSTGIDFtvwasvIGGVIAIGCAFVGTVMLHFITAKRQPAQGAPQEKTPEVItppeQGGIC 480
Cdd:TIGR01995 397 VKAFTAFAPGLLGLPMFInPSDGANF------ISALIAIVISFVVSFVLTYFIGFKDQEDVVTQEAAALSK----DESLY 466
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 481 SPMTGEIVPLIHVADTTFASGLLGKGIAILPSVGEVRSPVAGRIASLFATLHAIGIESDDGVEILIHVGIDTVKLDGKFF 560
Cdd:TIGR01995 467 APVAGEMLPLNEVPDEVFSSGAMGKGIAILPTEGEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGIDTVELNGEGF 546
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 937518099 561 SAHVNVGDKVNTGDRLISFDIPAIREAGFDLTTPVLISNSDDFTDVLPHGTAQISAGEPLLSII 624
Cdd:TIGR01995 547 EILVKVGDHVKAGQLLLTFDLDKIKEAGYDPTTPVVVTNTKDFLDVIPTDKETVTAGDVLLRLI 610
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
93-560 |
7.92e-110 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 338.07 E-value: 7.92e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 93 KGNLLNRFVYVISGIFTPLIGLMAATGILKGMLALALTFQW---TTEQSGTYLILFSASDALFWFFPIILGYTAGKRFGG 169
Cdd:COG1263 4 KKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLlgeGSFLSGTYQILNAAGDAVFYFLPLLFAIGAAKGFGG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 170 NPFTAMVIGGALVHPLILTAFEngqkADALGLDFLGIPvTLLNYSSSVIPIIFSAWLCSILERRLNAWLPSAIKNFFTPL 249
Cdd:COG1263 84 NPALAAVIGYLLVHPTLLNAYA----VAGGYISFLGIP-TLIGYQGGVFPGILAGWLAAYLEKFLKKKLPDALGFFFVPI 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 250 LCLMVITPVTFLLVGPLSTWISELIAAGYLWLYQAVPAFAGAVMGGFWQIFVMFGLHWGLVPLCINNFTVLGYDTMIPLL 329
Cdd:COG1263 159 LTLLIMVPLALLVIGPIWPPIGNGIAAGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGGTGDDGLFPIL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 330 MPAIMAQVGAALGVFLCER-DAQKKVVAGSAALTSLF-GITEPAVYGVNLPRKYPFVIACISGALGATIIGYAQTKVYSF 407
Cdd:COG1263 239 AAAMFGQPGAALAVYLKAKpNKKVKGLAISAALTAFLtGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKAFSF 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 408 GLPSIFTFMQTIPSTGIDFtvWASVIGGVIAIGCAFVGTVMLhfitaKRQPAQGAPQEKTPEVITPPEQGGIcSPMTGEI 487
Cdd:COG1263 319 GVGGLIDFPSILNPGATNL--LLYLIGLVIAFVYYFVFTFLI-----GREDEEEEEKLATKADAKKEEAEAA-AAALGGG 390
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 937518099 488 VPLIHVADTTFASGLLGKGIAILPSVGEVRSPVAGRIASLFATLHAIGIESDDGVEILIHVGIDTVKLDGKFF 560
Cdd:COG1263 391 GGLLLLEADITVLLLTLVDVVIVVVKDVVKLAAAGAVVVGVGGVGAVGGVGGGGVVIVIVIIILVVVLEGLGE 463
|
|
| PTS-II-BC-sucr |
TIGR01996 |
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C ... |
3-449 |
5.61e-94 |
|
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).
Pssm-ID: 131051 Cd Length: 461 Bit Score: 296.90 E-value: 5.61e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 3 ELARKIVAGVGGADNIVSLMHCATRLRFKLKDESKAQAEVLKKTPGIIMVVESGGQFQVVIG----NHVADVFLAVNSVA 78
Cdd:TIGR01996 4 QVAKEILELLGGKDNIVSVAHCATRLRLVLKDESKIDKKAIENLDGVKGTFFNSGQYQIIIGtgvvNKVYDEIVKLTGLS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 79 GLdEKAQQAPENDDKGNLLNRFVYVISGIFTPLIGLMAATGILKGMLALALTFQW--------TTEQSGTYLILFSASDA 150
Cdd:TIGR01996 84 ES-STSEQKAEAAKKMNPFQRFARTLSDIFVPIIPAIVATGLLMGLNGMLTAFGLfglsgvsvAPIPEGLAEMINVFTST 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 151 LFWFFPIILGYTAGKRFGGNPFTAMVIGGALVHPLILTAFENGQK-ADALGLDFLGIPVTLLNYSSSVIPIIFSAWLCSI 229
Cdd:TIGR01996 163 AFAFLPILIGFSAAKRFGGNPYLGAVIGLIMVHPSLPNAYGVAAGtATGKAWNIFGLHIPVVGYQGTVLPVLVAVWILAK 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 230 LERRLNAWLPSAIKNFFTPLLCLMVITPVTFLLVGPLSTWISELIAAGYLWLYQAVPAFAGAVMGGFWQIFVMFGLHWGL 309
Cdd:TIGR01996 243 IEKFLRKVVPNALDLLLTPFLTLLITGFLTLLVIGPIGRWVGDVLTDGLQWLYDLPGGLGGLLFGGLYSLIVITGIHHSF 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 310 VPL---CINNfTVLGYDTMIPLLMPAIMAQVGAALGVFLCERDAQKKVVAGSAALTSLFGITEPAVYGVNLPRKYPFVIA 386
Cdd:TIGR01996 323 HAIetqLLAN-TKTGGNFLFPIASMANVAQGGAALAVFFKTKDKKLKGLAIPSGLSALLGITEPAIFGVNLRYRKPFIAA 401
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 937518099 387 CISGALGATIIGYAQTKVYSFGLPSIFTFMQTIPStGIDFTVWasVIGGVIAIGCAFVGTVML 449
Cdd:TIGR01996 402 LIGGAIGGAYVVLFHVAATAYGLTGIPGFLSILPS-GINLLHY--IVGMLIAFAVAFIATLLL 461
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
148-433 |
1.33e-87 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 274.19 E-value: 1.33e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 148 SDALFWFFPIILGYTAGKRFGGNPFTAMVIGGALVHPLILTAFENGQKADAlglDFLGIPVTLLNYSSSVIPIIFSAWLC 227
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGGNPYLGAALAGILVHPVLNNAMGVGAQAVG---NFFGFEIAKVGYTGVVGPIIVGAIAL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 228 SILERRLNAWLPSAIKNFFTPLLCLMVITPVTFLLVGPLSTWISE-LIAAGYLWLYQAVPAFAGAVMGGFWQIFVMFGLH 306
Cdd:TIGR00852 78 ALHERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPvGISALLHWLYSAGGALGGAIFGFLYRLLVPTGLH 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 307 WGLVPLCINN---FTVLGYDTMIPLLMPAIMAQVGAALGVFLCERDAQKKVVAGSAALTSLFGITEPAVYGVNLPRKYPF 383
Cdd:TIGR00852 158 HIFYAIFIQLiagGTVIGGGQVIPGDALANMAQGGAALAVFFTAGDAKFKSIGLPAAFSAGLGITEPAMYGVALRERRPF 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 937518099 384 VIACISGALGATIIGYAQTKVYSFGLPSIFTFMQTIP--STGIDFTVWASVI 433
Cdd:TIGR00852 238 VAGLIGSALLTAFLTGITEPLEFLFLFGAPGLYSIHAvlAGSIFTVAIGMGI 289
|
|
| NagE |
COG2190 |
Phosphotransferase system IIA component [Carbohydrate transport and metabolism]; |
479-625 |
2.21e-68 |
|
Phosphotransferase system IIA component [Carbohydrate transport and metabolism];
Pssm-ID: 441793 [Multi-domain] Cd Length: 154 Bit Score: 219.23 E-value: 2.21e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 479 ICSPMTGEIVPLIHVADTTFASGLLGKGIAILPSVGEVRSPVAGRIASLFATLHAIGIESDDGVEILIHVGIDTVKLDGK 558
Cdd:COG2190 8 IYAPVSGEVVPLSEVPDPVFASKMMGDGVAIEPTGGKVVAPVDGTVTSVFPTKHAIGLTSDDGLEVLIHIGIDTVKLNGE 87
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 937518099 559 FFSAHVNVGDKVNTGDRLISFDIPAIREAGFDLTTPVLISNSDDFTDVLPHGTAQISAGEPLLSIIR 625
Cdd:COG2190 88 GFTVLVKEGDKVKAGDPLIEFDLDAIKAAGYSLITPVVVTNSDEYKSVELTKSGQVKAGDPLLTVKL 154
|
|
| PTS-IIBC-Tre |
TIGR01992 |
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and ... |
5-449 |
2.72e-66 |
|
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system. Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively). In E. coli, B. subtilis and P. fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Pssm-ID: 273916 Cd Length: 462 Bit Score: 224.22 E-value: 2.72e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 5 ARKIVAGVGGADNIVSLMHCATRLRFKLKDESKAQAEVLKKTPGIIMVVESGGQFQVVIG-NHVADVFLAVNSVAGLDE- 82
Cdd:TIGR01992 4 AKAILEAIGGKENIEAATHCVTRLRFVLKDPSKVDVKALEQIDLVKGSFTNAGQFQVVIGpGTVDKVYAALIAETGIAEv 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 83 -KAQQAPENDDKGNLLNRFVYVISGIFTPLIGLMAATGILKG----MLALALTFQWTT------EQSGTYLILFSASDAL 151
Cdd:TIGR01992 84 sKEEVKKAAAKNMNPLQRLIKLLADIFIPILPAIITAGLLMGinnlLGAKGMSFGGQTlvevypQWAGIYNFINLIAETA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 152 FWFFPIILGYTAGKRFGGNPFTAMVIGGALVHPLILTAFENGQKADALGL---DFLG-IPVTLLNYSSSVIPIIFSAWLC 227
Cdd:TIGR01992 164 FHFLPALIGWSAVKKFGGSPILGIVLGLMLVHPQLLNAYLYGQALAEGNIpvwDLFGfFEIQKVGYQGQVLPALLAGYVL 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 228 SILERRLNAWLPSAIKNFFTPLLCLMVITPVTFLLVGPLSTWISELIAAGYLWLYQAVPAFAGAVMGGFWQIFVMFGLHW 307
Cdd:TIGR01992 244 AVIEKWLRKRVPDAIQLLVVPPVSLLVTGFLAHAIIGPIGRLIGNGITSGVTALFTSAAWLGGAIFGLLYAPLVITGLHH 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 308 GLVPLCINNFTVLGYDTMIPLLMPAIMAQVGAALGVFLCERDAQKKVVAGSAALTSLFGITEPAVYGVNLPRKYPFVIAC 387
Cdd:TIGR01992 324 MFLAVDLQLIGSLGGTFLWPMIALSNIAQGSAALGIIFMSRNEKEKGLSLTSAISAYLGVTEPAMFGVNLKYKFPFIAAM 403
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 937518099 388 ISGALGATIIGYAQTKVYSFGLPSIFTFMQTIPSTGIDFtvwasVIGGVIAIGCAFVGTVML 449
Cdd:TIGR01992 404 IGSGLAGLLSGLNGVLANSIGVGGLPGFISIQPQYWPVF-----AIGMAIAIVVPFVLTIFF 460
|
|
| PTS_IIA_glc |
cd00210 |
PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: ... |
479-602 |
4.56e-64 |
|
PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Pssm-ID: 238128 [Multi-domain] Cd Length: 124 Bit Score: 206.76 E-value: 4.56e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 479 ICSPMTGEIVPLIHVADTTFASGLLGKGIAILPSVGEVRSPVAGRIASLFATLHAIGIESDDGVEILIHVGIDTVKLDGK 558
Cdd:cd00210 1 LASPITGEIVPLDQVPDEVFASKMMGDGFAIKPSDGKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGIDTVKLNGE 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 937518099 559 FFSAHVNVGDKVNTGDRLISFDIPAIREAGFDLTTPVLISNSDD 602
Cdd:cd00210 81 GFTSHVEEGQRVKQGDKLLEFDLPAIKAAGLDDTTPVIVTNSDE 124
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
3-465 |
2.15e-60 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 208.88 E-value: 2.15e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 3 ELARKIVAGVGGADNIVSLMHCATRLRFKLKDESKAQAEVLKKTPGIIMVVESGGQFQVVIGNHVADVFLAVNSVAGLDE 82
Cdd:PRK09796 7 ALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLLPGDM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 83 KAQQAPENDDKgnllnRFVYVISGIFTPLIGLMAAT------GILKGMLALALTFQWTTEQ-SGTYLILFSASDALFWFF 155
Cdd:PRK09796 87 QPAQPVGKPKL-----TLRRIGAGILDALIGTMSPLipaiigGSMVKLLAMILEMSGVLTKgSPTLTILNVIGDGAFFFL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 156 PIILGYTAGKRFGGNPFTAMVIGGALVHPLILTAFenGQKADALGLDFLGIPVTLLNYSSSVIPIIFSAWLCSILERRLN 235
Cdd:PRK09796 162 PLMVAASAAIKFKTNMSLAIAIAGVLVHPSFIELM--AKAAQGEHVEFALIPVTAVKYTYTVIPALVMTWCLSYIERWVD 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 236 AWLPSAIKNFFTPLLCLMVITPVTFLLVGPLSTWISELIAA------GYL-WLyqavpafAGAVMGGFWQIFVMFGLHWG 308
Cdd:PRK09796 240 RITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISAlvytihGYLgWL-------SVAIMGALWPLLVMTGMHRV 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 309 LVPLCINNFTVLGYDTMI-PLLMPAIMAQVGAALGVFLCERDAQKKVVAGSAALTSLF-GITEPAVYGVNLPRKYPFVIA 386
Cdd:PRK09796 313 FTPTIIQTIAETGKEGMVmPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMaGISEPALYGVAIRLKRPLIAS 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 387 CISGALGATIIGYAQTKVYSFGLPSIFTFMQTIPSTGIDFTVWasVIG-GVIAIGCAFVGTVMLHF--ITAKRQPAQGAP 463
Cdd:PRK09796 393 LISGFICGAVAGMAGLASHSMAAPGLFTSVQFFDPANPMSIVW--VFAvMALAVVLSFILTLLLGFedIPVEEAAAEARK 470
|
..
gi 937518099 464 QE 465
Cdd:PRK09796 471 HQ 472
|
|
| PTBA |
TIGR00830 |
PTS system, glucose subfamily, IIA component; These are part of the The PTS Glucose-Glucoside ... |
479-599 |
3.00e-58 |
|
PTS system, glucose subfamily, IIA component; These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. The three-dimensional structures of the IIA and IIB domains of the E. coli glucose permease have been elucidated. IIAglchas a complex b-sandwich structure while IIBglc is a split ab-sandwich with a topology unrelated to the split ab-sandwich structure of HPr. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273289 [Multi-domain] Cd Length: 121 Bit Score: 191.31 E-value: 3.00e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 479 ICSPMTGEIVPLIHVADTTFASGLLGKGIAILPSVGEVRSPVAGRIASLFATLHAIGIESDDGVEILIHVGIDTVKLDGK 558
Cdd:TIGR00830 1 IVSPISGEIVPLDQVPDEVFASKIVGDGFAILPTDGKVVAPVDGKIGKIFPTKHAFGIESDNGVEILIHIGIDTVKLNGE 80
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 937518099 559 FFSAHVNVGDKVNTGDRLISFDIPAIREAGFDLTTPVLISN 599
Cdd:TIGR00830 81 GFTSHVEEGDRVKKGDPLLEFDLKAIKKKGYSITTPVVVTN 121
|
|
| PTS_EIIA_1 |
pfam00358 |
phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; |
479-597 |
1.54e-56 |
|
phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1;
Pssm-ID: 459779 [Multi-domain] Cd Length: 121 Bit Score: 186.82 E-value: 1.54e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 479 ICSPMTGEIVPLIHVADTTFASGLLGKGIAILPSVGEVRSPVAGRIASLFATLHAIGIESDDGVEILIHVGIDTVKLDGK 558
Cdd:pfam00358 3 IYSPVSGEVIPLSEVPDPVFSQKMMGDGVAIEPSEGKVYAPVDGTVTTVFPTKHAIGITTDDGVEVLIHIGIDTVKLKGE 82
|
90 100 110
....*....|....*....|....*....|....*....
gi 937518099 559 FFSAHVNVGDKVNTGDRLISFDIPAIREAGFDLTTPVLI 597
Cdd:pfam00358 83 GFESLVKEGDKVKAGDLLLEFDLEAIKAAGYSTTTPVVV 121
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
2-413 |
2.63e-47 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 172.94 E-value: 2.63e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 2 TELARKIVAGVGGADNIVSLMHCATRLRFKLKDESKAQAEVLKKTPGIIMVVESGGQFQVVIG----NHVADVFLAVNSV 77
Cdd:PRK09586 6 SELLNTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIEGVKGVILSDDQVQVVLGpgkaQRAAKAMNELLGE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 78 AGLDEKAQQAPENDDKGNL-------LNRFVYVISGIFTPLIGLMAATGILKGMLALALTFQWTTEQSGTYLILFSA--- 147
Cdd:PRK09586 86 AAAPVQDLAEIAAQNKRQLkakqtsgVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIEQVMHVPADAQGTLPDALNymk 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 148 --SDALFWFFPIILGYTAGKRFGGNPFTAMVIGGALV---HPLILTAFENGQKadalglDFLGIPVtllNYSSSVIPIIF 222
Cdd:PRK09586 166 vfSKGLFTFLSILIGYNAQQAFGGTGVNGAIIASLFLlgyNPAATTGYYAGFH------DFFGLPI---DPRGNIIGVLI 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 223 SAWLCSILERRLNAWLPSAIKNFFTPLLCLMVITPVTFLLVGPLSTWISEliaaGYLWLYQAVPA--FAGAVMGGFWQIF 300
Cdd:PRK09586 237 AAIAGARIERMVRRFMPDDLDMILTSLITLLITGALAFLIIMPLGGWLFE----GMSWLFMHLNSnpFGCAVLAGLFLIA 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 301 VMFGLHWGLVPLCINNFTVLGYDTMIPLLMPAIMAQVGAALGVFL-CERDAQKKVVAGSAALTSLFGITEPAVYGVNLPR 379
Cdd:PRK09586 313 VVFGVHQGFIPVYFALMDSQGFNSLFPILAMAGAGQVGAALALYWrAQKHSALRTQVKGAIIPGLLGVGEPLIYGVTLPR 392
|
410 420 430
....*....|....*....|....*....|....
gi 937518099 380 KYPFVIACISGALGATIIGYAQTKVYSFGLPSIF 413
Cdd:PRK09586 393 MKPFVTACLGGAAGGFFIGLIAWLGLPVGLNSVF 426
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
7-461 |
6.16e-43 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 161.01 E-value: 6.16e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 7 KIVAGVGGADNIVSLMHCATRLRFKLKDESKAQAEVLKKTPGIIMVVESGGQFQVVIGNHVADVFLAVNSVAGLDEKAQQ 86
Cdd:PRK11007 12 RLIELVGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMVKGCFTNAGQFQVVIGTEVGDYYKALIATTGQAEVDKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 87 APENDDKGNL--LNRFVYVISGIFTPLIGLMAATGILKGM------------LALALTFQ-WTTEQSGTYLIlfsaSDAL 151
Cdd:PRK11007 92 QAKKAARQNMkwHERLISHFAEIFFPLLPALISGGLILGFrnvigdipmsdgQTLAQMYPfWQTIYDFLWLI----GEAI 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 152 FWFFPIILGYTAGKRFGGNPFTAMVIGGALVHPLILTAFENGQKADALgLDFLGIPVTLLNYSSSVIPIIFSAWLCSILE 231
Cdd:PRK11007 168 FFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQLPEV-WDFGLFSIEKVGYQAQVIPALLAGLALGFIE 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 232 RRLNAWLPSAIKNFFTPLLCLMVITPVTFLLVGPLSTWISELIAAGYLWLYQAVPAFAGAVMGGF-WQIFVMFGLHWGLV 310
Cdd:PRK11007 247 TRLKRIVPDYLYLVVVPVCSLILAVFLAHALIGPFGRMIGDGVAFAVKALMTGSFAPIGAALFGFlYAPLVITGVHQTTL 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 311 PLCINNFTVLGYDTMIPLLMPAIMAQVGAALGVFLCERDAQKKVVAGSAALTSLFGITEPAVYGVNLPRKYPFVIACISG 390
Cdd:PRK11007 327 AIDLQMIQSMGGTPVWPLIALSNIAQASAVVGIIIISRKHNEREISVPAAISAYLGVTEPAMYGINLKYRFPMLCAMIGS 406
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 937518099 391 ALGATIIGYAQTKVYSF---GLPSIFTfmqtipstgIDFTVWASViggVIAIGCAFVGTVMLHFITAKRQPAQG 461
Cdd:PRK11007 407 ALAGLICGLNGVMANGIgvgGLPGILS---------IQPQYWQVY---ALAMLVAIVVPIVLTSFIYKRKERLG 468
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
2-71 |
1.51e-32 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 119.95 E-value: 1.51e-32
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 2 TELARKIVAGVGGADNIVSLMHCATRLRFKLKDESKAQAEVLKKTPGIIMVVESGGQFQVVIGNHVADVF 71
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVADVY 70
|
|
| PRK09439 |
PRK09439 |
PTS system glucose-specific transporter subunit; Provisional |
479-623 |
1.14e-31 |
|
PTS system glucose-specific transporter subunit; Provisional
Pssm-ID: 181859 [Multi-domain] Cd Length: 169 Bit Score: 120.85 E-value: 1.14e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 479 ICSPMTGEIVPLIHVADTTFASGLLGKGIAILPSVGEVRSPVAGRIASLFATLHAIGIESDDGVEILIHVGIDTVKLDGK 558
Cdd:PRK09439 23 IIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE 102
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937518099 559 FFSAHVNVGDKVNTGDRLISFDIPAIREAGFDLTTPVLISNSDDFTDvLPHGTAQISAGE-PLLSI 623
Cdd:PRK09439 103 GFKRIAEEGQRVKVGDPIIEFDLPLLEEKAKSTLTPVVISNMDEIKE-LIKLSGSVTAGEtPVIRV 167
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
2-75 |
1.12e-29 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 111.75 E-value: 1.12e-29
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 937518099 2 TELARKIVAGVGGADNIVSLMHCATRLRFKLKDESKAQAEVLKKTpGIIMVVESGGQFQVVIGNHVADVFLAVN 75
Cdd:COG1264 1 KELAKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKL-GVKGVVKNGGQVQVIIGPGVDKVADEIE 73
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
105-388 |
1.71e-25 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 107.43 E-value: 1.71e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 105 SGIFTPLIGLMAATGILKGML-----ALALTFQWTTEQSGTYLILFSASDALFWFFPIILGYTAGKRF-GGNPFTAMVIG 178
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGnlpndTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLaGGDGVAGAAGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 179 GALVHPLILTAFENGQKADAL--GLDFLGIPVTLLNYSSSVIPIIFSAWLCSILE----RRLNAWLPSAIKNFFTPLLCL 252
Cdd:pfam02378 81 IGLLSFNLAAAISVALTAAGLsgGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEknitIKLPDSLPFFVGKRFVPIITG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 253 MVITPVTFLLVGPLSTWISELIAAGYLWLYQAVPAFAGAVMGGFWQIFVMFGLH------------WGLVPLCINNFTVL 320
Cdd:pfam02378 161 FVTLLVIGPVLGLIWPAIQGGLNALGLLLIIAGGILGGLIFGFLERLLWPFGLHgafiaifwflpiGGSNPIANQQAYGA 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 937518099 321 GYDTMIPLLMPAIMAQVGAALGVFLCERDAQKKVVA---GSAALTS-LFGITEPAVYGVNLPRKYPFVIACI 388
Cdd:pfam02378 241 GAAHILTGGFDVMFGGPGATLALYAAAFLFKKSKVKkllGSAALTPfLFGITEPLEFGFPFVLNPPFFIPAI 312
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
453-623 |
2.16e-24 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 108.03 E-value: 2.16e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 453 TAKRQPAQGAPQEKTPEVITPPEQGGICSPMTGEIVPLIHVADTTFASGLLGKGIAILPSVGEVRSPVAGRIASLFATLH 532
Cdd:PRK10255 475 SAEATPATAAPVAKPQAVPNAVSIAELVSPITGDVVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNH 554
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 533 AIGIESDDGVEILIHVGIDTVKLDGKFFSAHVNVGDKVNTGDRLISFDIPAIREAGFDLTTPVLISNSDDFTDVLPHGTA 612
Cdd:PRK10255 555 AFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDDFSGLIIKAQG 634
|
170
....*....|..
gi 937518099 613 QISAGE-PLLSI 623
Cdd:PRK10255 635 HVVAGQtPLYEI 646
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
26-106 |
4.02e-18 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 79.32 E-value: 4.02e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 26 TRLRFKLKDESKAQAEVLKKTPGIIMVVESGGQFQVVIGN-HVADVFLAVNSV-AGLDEKAQ---QAPEND--DKGNLLN 98
Cdd:TIGR00826 1 TRLRLKTPGREKADEEAIAAGEGVKGVFTAAGQIQALGGTgNVNKVDACITRLrVGVADVSKvddAVLKKLgaHGVNPLQ 80
|
....*...
gi 937518099 99 RFVYVISG 106
Cdd:TIGR00826 81 RAVQVISG 88
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
6-37 |
3.49e-14 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 66.62 E-value: 3.49e-14
10 20 30
....*....|....*....|....*....|..
gi 937518099 6 RKIVAGVGGADNIVSLMHCATRLRFKLKDESK 37
Cdd:pfam00367 1 KEILEALGGKENIKSVDHCATRLRLTVKDESK 32
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
1-64 |
6.94e-09 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 53.13 E-value: 6.94e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 937518099 1 MTELARKIVAGVGGADNIVSLMHCATRLRFKLKDESKAQAEVLKKTpGIIMVVESGGQFQVVIG 64
Cdd:TIGR00826 26 GVFTAAGQIQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKL-GAHGVNPLQRAVQVISG 88
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
2-64 |
5.15e-07 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 52.34 E-value: 5.15e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 937518099 2 TELARKIVAGVGGADNIVSLMHCATRLRFKLKDESKAQAEVLKKTPGIIMVVESGGQFQVVIG 64
Cdd:PRK14905 275 SEIAIQLIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIEKIDCVKGLFSIANQYQIILG 337
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
8-70 |
7.91e-07 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 52.04 E-value: 7.91e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 937518099 8 IVAGVGGADNIVSLMHCATRLRFKLKDESKAQAEVLKKTPGIIMVVESGGQFQVVIGNHVADV 70
Cdd:PRK10110 455 ILEALGGADNIVSLDNCITRLRLSVKDMSLVDVQALKDNRAIGVVQLNQHNLQVVIGPQVQSV 517
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
5-90 |
1.91e-06 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 48.17 E-value: 1.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518099 5 ARKIVAGVGGADNIVSLMHCATRLRFKLKDESKAQAEVLKKTPGIIMVVESGGQFQVVIGNHVADVFLAVNSVAgldeKA 84
Cdd:PRK09702 73 AAGILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSLI----NS 148
|
....*.
gi 937518099 85 QQAPEN 90
Cdd:PRK09702 149 HQSAEN 154
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
2-64 |
7.46e-05 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 45.48 E-value: 7.46e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 937518099 2 TELARKIVAGVGGADNIVSLMHCATRLRFKLKDESKAQAEVLKKTpGIIMVVESGGQFQVVIG 64
Cdd:PRK11089 399 SEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKL-GAAGVVVAGSGVQAIFG 460
|
|
| |
