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Conserved domains on  [gi|937518762|gb|ALI39248|]
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glycogen synthesis protein GlgS [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GlgS pfam08971
Glycogen synthesis protein; Members of this family are involved in glycogen synthesis in ...
 1-66 1.27e-42

Glycogen synthesis protein; Members of this family are involved in glycogen synthesis in Enterobacteria. The structure of the polypeptide chain comprises a bundle of two parallel amphipathic helices, alpha-1 and alpha-3, and a short hydrophobic helix alpha-2 sandwiched between them.


:

Pssm-ID: 401064  Cd Length: 66  Bit Score: 132.03  E-value: 1.27e-42
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937518762   1 MDHSLNSLNNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQARELELEH 66
Cdd:pfam08971  1 MDNALYSLNNFDFLARSFARMHAEGRPVDINAVTGNMDEAHRQWFCKRYALYCQQEAQAKSLELEH 66
 
Name Accession Description Interval E-value
GlgS pfam08971
Glycogen synthesis protein; Members of this family are involved in glycogen synthesis in ...
 1-66 1.27e-42

Glycogen synthesis protein; Members of this family are involved in glycogen synthesis in Enterobacteria. The structure of the polypeptide chain comprises a bundle of two parallel amphipathic helices, alpha-1 and alpha-3, and a short hydrophobic helix alpha-2 sandwiched between them.


Pssm-ID: 401064  Cd Length: 66  Bit Score: 132.03  E-value: 1.27e-42
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937518762   1 MDHSLNSLNNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQARELELEH 66
Cdd:pfam08971  1 MDNALYSLNNFDFLARSFARMHAEGRPVDINAVTGNMDEAHRQWFCKRYALYCQQEAQAKSLELEH 66
PRK02922 PRK02922
cell surface composition regulator GlgS;
1-66 6.90e-40

cell surface composition regulator GlgS;


Pssm-ID: 179501  Cd Length: 67  Bit Score: 124.92  E-value: 6.90e-40
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937518762  1 MDHSLNSLNNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQARELELEH 66
Cdd:PRK02922  2 NDHSLYSLNNFDFLARSFARMHAEGRPVDIQAVTGNMDEEHRTWFCARYAWYCQQMMQARELELEH 67
 
Name Accession Description Interval E-value
GlgS pfam08971
Glycogen synthesis protein; Members of this family are involved in glycogen synthesis in ...
 1-66 1.27e-42

Glycogen synthesis protein; Members of this family are involved in glycogen synthesis in Enterobacteria. The structure of the polypeptide chain comprises a bundle of two parallel amphipathic helices, alpha-1 and alpha-3, and a short hydrophobic helix alpha-2 sandwiched between them.


Pssm-ID: 401064  Cd Length: 66  Bit Score: 132.03  E-value: 1.27e-42
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937518762   1 MDHSLNSLNNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQARELELEH 66
Cdd:pfam08971  1 MDNALYSLNNFDFLARSFARMHAEGRPVDINAVTGNMDEAHRQWFCKRYALYCQQEAQAKSLELEH 66
PRK02922 PRK02922
cell surface composition regulator GlgS;
1-66 6.90e-40

cell surface composition regulator GlgS;


Pssm-ID: 179501  Cd Length: 67  Bit Score: 124.92  E-value: 6.90e-40
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937518762  1 MDHSLNSLNNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQARELELEH 66
Cdd:PRK02922  2 NDHSLYSLNNFDFLARSFARMHAEGRPVDIQAVTGNMDEEHRTWFCARYAWYCQQMMQARELELEH 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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