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Conserved domains on  [gi|985000784|gb|AMC94870|]
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flagellar motor stator protein MotA [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

flagellar motor stator protein MotA( domain architecture ID 10013143)

motility protein A (MotA) is a flagellar motor stator protein which is energized by a proton (H(+)) motive force

Gene Symbol:  motA
Gene Ontology:  GO:0120101|GO:1902600|GO:0006935
PubMed:  6090403|32931735

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK09110 PRK09110
flagellar motor stator protein MotA;
1-283 7.30e-178

flagellar motor stator protein MotA;


:

Pssm-ID: 181655 [Multi-domain]  Cd Length: 283  Bit Score: 491.60  E-value: 7.30e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784   1 MLILLGYLVVLGTVFGGYLMTGGSLGALYQPAELVIIAGAGIGSFIVGNNGKAIKGTLKALPLLFRRSKYTKAMYMDLLA 80
Cdd:PRK09110   1 MLIIIGYIVVLGSVFGGYLLAGGHLGALIQPAELLIIGGAALGAFIVGNPGKAIKATLKALPKLFKGPKYKKADYMDLLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784  81 LLYRLMAKSRQMGMFSLERDIENPRESEIFASYPRILADSVMLDFIVDYLRLIISGHMNTFEIEALMDEEIETHESEAEV 160
Cdd:PRK09110  81 LLYELLRKARQEGMMALEAHIENPEESPIFAKYPKILKDHHLVDFICDYLRLMISGNMNPHEIEALMDEEIETHHHEAEV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784 161 PANSLALVGDSLPAFGIVAAVMGVVHALGSADRPAAELGALIAHAMVGTFLGILLAYGFISPLATVLRQKSAETSKMMQC 240
Cdd:PRK09110 161 PAHALQKVADALPAFGIVAAVLGVVKTMGSIDQPPAVLGALIGAALVGTFLGILLAYGFVGPLAARLEQVVEEDTKMYQC 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 985000784 241 VKVTLLSNLNGYAPPIAVEFGRKTLYSSERPSFIELEEHVRAV 283
Cdd:PRK09110 241 IKVTLLASLNGYAPQIAVEFGRKTLPSTERPSFAELEEHVRGV 283
 
Name Accession Description Interval E-value
PRK09110 PRK09110
flagellar motor stator protein MotA;
1-283 7.30e-178

flagellar motor stator protein MotA;


Pssm-ID: 181655 [Multi-domain]  Cd Length: 283  Bit Score: 491.60  E-value: 7.30e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784   1 MLILLGYLVVLGTVFGGYLMTGGSLGALYQPAELVIIAGAGIGSFIVGNNGKAIKGTLKALPLLFRRSKYTKAMYMDLLA 80
Cdd:PRK09110   1 MLIIIGYIVVLGSVFGGYLLAGGHLGALIQPAELLIIGGAALGAFIVGNPGKAIKATLKALPKLFKGPKYKKADYMDLLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784  81 LLYRLMAKSRQMGMFSLERDIENPRESEIFASYPRILADSVMLDFIVDYLRLIISGHMNTFEIEALMDEEIETHESEAEV 160
Cdd:PRK09110  81 LLYELLRKARQEGMMALEAHIENPEESPIFAKYPKILKDHHLVDFICDYLRLMISGNMNPHEIEALMDEEIETHHHEAEV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784 161 PANSLALVGDSLPAFGIVAAVMGVVHALGSADRPAAELGALIAHAMVGTFLGILLAYGFISPLATVLRQKSAETSKMMQC 240
Cdd:PRK09110 161 PAHALQKVADALPAFGIVAAVLGVVKTMGSIDQPPAVLGALIGAALVGTFLGILLAYGFVGPLAARLEQVVEEDTKMYQC 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 985000784 241 VKVTLLSNLNGYAPPIAVEFGRKTLYSSERPSFIELEEHVRAV 283
Cdd:PRK09110 241 IKVTLLASLNGYAPQIAVEFGRKTLPSTERPSFAELEEHVRGV 283
MotA1 TIGR03818
flagellar motor stator protein MotA; The MotA protein, along with its partner MotB, comprise ...
 1-282 1.34e-154

flagellar motor stator protein MotA; The MotA protein, along with its partner MotB, comprise the stator complex of the bacterial flagellar motor. MotAB span the cytoplasmic membrane and undergo conformational changes powered by the translocation of protons. These conformational changes in turn are communicated to the rotor assembly, producing torque. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.


Pssm-ID: 274801 [Multi-domain]  Cd Length: 282  Bit Score: 432.71  E-value: 1.34e-154
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784    1 MLILLGYLVVLGTVFGGYLMTGGSLGALYQPAELVIIAGAGIGSFIVGNNGKAIKGTLKALPLLFRRSKYTKAMYMDLLA 80
Cdd:TIGR03818   1 MLKIIGLVVVLGSVFGGYALAGGHLAALWQPAELLIIGGAALGAFIIANPPKVLKETLKGLPAVFKGSKYGKADYLDLLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784   81 LLYRLMAKSRQMGMFSLERDIENPRESEIFASYPRILADSVMLDFIVDYLRLIISGHMNTFEIEALMDEEIETHESEAEV 160
Cdd:TIGR03818  81 LLYELLRKARREGLMAIESHIENPEESSIFSKYPKILKDHHLVEFICDYLRLMVMGNMNPHELEALMEEEIETHHHELLK 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784  161 PANSLALVGDSLPAFGIVAAVMGVVHALGSADRPAAELGALIAHAMVGTFLGILLAYGFISPLATVLRQKSAETSKMMQC 240
Cdd:TIGR03818 161 PAHALQKVADALPGFGIVAAVLGVVITMGSIDGPPEVLGHHIAAALVGTFLGILLCYGFVGPLAAALEQRVEEEIKFLEC 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 985000784  241 VKVTLLSNLNGYAPPIAVEFGRKTLYSSERPSFIELEEHVRA 282
Cdd:TIGR03818 241 VKVVLVAFLNGYAPQLAVEFGRKVIPSDVRPSFAELEEWVRG 282
MotA COG1291
Flagellar motor component MotA [Cell motility];
1-275 5.01e-96

Flagellar motor component MotA [Cell motility];


Pssm-ID: 440902 [Multi-domain]  Cd Length: 258  Bit Score: 283.51  E-value: 5.01e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784   1 MLILLGYLVVLGTVFGGYLMTGGSLGALYQPAELVIIAGAGIGSFIVGNNGKAIKGTLKALPLLFRRSKytkAMYMDLLA 80
Cdd:COG1291    1 MATIIGLVVGLGAVLGGFLLEGGSLGALIQPPSLLIVFGGTLGAVLISFPLKVLKAALKALKKAFKGKK---ADYEELIE 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784  81 LLYRLMAKSRQMGMFSLERDIENpreseifasypriladsVMLDFIVDYLRLIISGhMNTFEIEALMDEEIETHESEAEV 160
Cdd:COG1291   78 LLVELAEKARKEGLLALESDIEE-----------------IDDPFLRDGLRLVVDG-TDPEEIRELLETEIEAMEERHEA 139

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784 161 PANSLALVGDSLPAFGIVAAVMGVVHALGSADRPAAeLGALIAHAMVGTFLGILLAYGFISPLATVLRQKSAETSKMMQC 240
Cdd:COG1291  140 GAKVFEAMGDYAPAFGIIGTVLGLIQMLGNLDDPSA-LGPGIAVALVTTFYGVLLANLFFLPIANKLKRRSEEEVLLREM 218

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 985000784 241 VKVTLLSNLNGYAPPIAVEFGRKTLYSSERPSFIE 275
Cdd:COG1291  219 IIEGLLAIQAGENPRIIEEKLRSFLPPSERPSFEE 253
MotA_N pfam20560
Motility protein A N-terminal; This entry represents the N-terminal domain of Motility protein ...
 4-93 2.22e-39

Motility protein A N-terminal; This entry represents the N-terminal domain of Motility protein A (MotA). MotA is a membrane protein that forms the stator element of the flagellar motor complex together with MotB with 5:2 stoichiometry, which couples ion flow across the cytoplasmic membrane to generate torque, and thus, it is required for rotation of the flagellar motor. This domain contains conserved torque-generating charged residues at the C-terminal and is adjacent pfam01618, which represents MotA TMH3 and TMH4.


Pssm-ID: 466709 [Multi-domain]  Cd Length: 91  Bit Score: 132.91  E-value: 2.22e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784    4 LLGYLVVLGTVFGGYLMTGGSLGALYQ-PAELVIIAGAGIGSFIVGNNGKAIKGTLKALPLLFRRSKYTKAMYMDLLALL 82
Cdd:pfam20560   1 IIGIVVVLGCVFGGYALAGGHLGVLWQlPFELLIIGGAAIGAFIIANPMKVLKATLKALPKAFKGSKYKKADYLDLLALL 80

                          90
                  ....*....|.
gi 985000784   83 YRLMAKSRQMG 93
Cdd:pfam20560  81 YELLRKARKEG 91
 
Name Accession Description Interval E-value
PRK09110 PRK09110
flagellar motor stator protein MotA;
1-283 7.30e-178

flagellar motor stator protein MotA;


Pssm-ID: 181655 [Multi-domain]  Cd Length: 283  Bit Score: 491.60  E-value: 7.30e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784   1 MLILLGYLVVLGTVFGGYLMTGGSLGALYQPAELVIIAGAGIGSFIVGNNGKAIKGTLKALPLLFRRSKYTKAMYMDLLA 80
Cdd:PRK09110   1 MLIIIGYIVVLGSVFGGYLLAGGHLGALIQPAELLIIGGAALGAFIVGNPGKAIKATLKALPKLFKGPKYKKADYMDLLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784  81 LLYRLMAKSRQMGMFSLERDIENPRESEIFASYPRILADSVMLDFIVDYLRLIISGHMNTFEIEALMDEEIETHESEAEV 160
Cdd:PRK09110  81 LLYELLRKARQEGMMALEAHIENPEESPIFAKYPKILKDHHLVDFICDYLRLMISGNMNPHEIEALMDEEIETHHHEAEV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784 161 PANSLALVGDSLPAFGIVAAVMGVVHALGSADRPAAELGALIAHAMVGTFLGILLAYGFISPLATVLRQKSAETSKMMQC 240
Cdd:PRK09110 161 PAHALQKVADALPAFGIVAAVLGVVKTMGSIDQPPAVLGALIGAALVGTFLGILLAYGFVGPLAARLEQVVEEDTKMYQC 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 985000784 241 VKVTLLSNLNGYAPPIAVEFGRKTLYSSERPSFIELEEHVRAV 283
Cdd:PRK09110 241 IKVTLLASLNGYAPQIAVEFGRKTLPSTERPSFAELEEHVRGV 283
MotA1 TIGR03818
flagellar motor stator protein MotA; The MotA protein, along with its partner MotB, comprise ...
 1-282 1.34e-154

flagellar motor stator protein MotA; The MotA protein, along with its partner MotB, comprise the stator complex of the bacterial flagellar motor. MotAB span the cytoplasmic membrane and undergo conformational changes powered by the translocation of protons. These conformational changes in turn are communicated to the rotor assembly, producing torque. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.


Pssm-ID: 274801 [Multi-domain]  Cd Length: 282  Bit Score: 432.71  E-value: 1.34e-154
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784    1 MLILLGYLVVLGTVFGGYLMTGGSLGALYQPAELVIIAGAGIGSFIVGNNGKAIKGTLKALPLLFRRSKYTKAMYMDLLA 80
Cdd:TIGR03818   1 MLKIIGLVVVLGSVFGGYALAGGHLAALWQPAELLIIGGAALGAFIIANPPKVLKETLKGLPAVFKGSKYGKADYLDLLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784   81 LLYRLMAKSRQMGMFSLERDIENPRESEIFASYPRILADSVMLDFIVDYLRLIISGHMNTFEIEALMDEEIETHESEAEV 160
Cdd:TIGR03818  81 LLYELLRKARREGLMAIESHIENPEESSIFSKYPKILKDHHLVEFICDYLRLMVMGNMNPHELEALMEEEIETHHHELLK 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784  161 PANSLALVGDSLPAFGIVAAVMGVVHALGSADRPAAELGALIAHAMVGTFLGILLAYGFISPLATVLRQKSAETSKMMQC 240
Cdd:TIGR03818 161 PAHALQKVADALPGFGIVAAVLGVVITMGSIDGPPEVLGHHIAAALVGTFLGILLCYGFVGPLAAALEQRVEEEIKFLEC 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 985000784  241 VKVTLLSNLNGYAPPIAVEFGRKTLYSSERPSFIELEEHVRA 282
Cdd:TIGR03818 241 VKVVLVAFLNGYAPQLAVEFGRKVIPSDVRPSFAELEEWVRG 282
MotA COG1291
Flagellar motor component MotA [Cell motility];
1-275 5.01e-96

Flagellar motor component MotA [Cell motility];


Pssm-ID: 440902 [Multi-domain]  Cd Length: 258  Bit Score: 283.51  E-value: 5.01e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784   1 MLILLGYLVVLGTVFGGYLMTGGSLGALYQPAELVIIAGAGIGSFIVGNNGKAIKGTLKALPLLFRRSKytkAMYMDLLA 80
Cdd:COG1291    1 MATIIGLVVGLGAVLGGFLLEGGSLGALIQPPSLLIVFGGTLGAVLISFPLKVLKAALKALKKAFKGKK---ADYEELIE 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784  81 LLYRLMAKSRQMGMFSLERDIENpreseifasypriladsVMLDFIVDYLRLIISGhMNTFEIEALMDEEIETHESEAEV 160
Cdd:COG1291   78 LLVELAEKARKEGLLALESDIEE-----------------IDDPFLRDGLRLVVDG-TDPEEIRELLETEIEAMEERHEA 139

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784 161 PANSLALVGDSLPAFGIVAAVMGVVHALGSADRPAAeLGALIAHAMVGTFLGILLAYGFISPLATVLRQKSAETSKMMQC 240
Cdd:COG1291  140 GAKVFEAMGDYAPAFGIIGTVLGLIQMLGNLDDPSA-LGPGIAVALVTTFYGVLLANLFFLPIANKLKRRSEEEVLLREM 218

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 985000784 241 VKVTLLSNLNGYAPPIAVEFGRKTLYSSERPSFIE 275
Cdd:COG1291  219 IIEGLLAIQAGENPRIIEEKLRSFLPPSERPSFEE 253
PRK12482 PRK12482
flagellar motor stator protein MotA;
1-283 2.03e-73

flagellar motor stator protein MotA;


Pssm-ID: 171532 [Multi-domain]  Cd Length: 287  Bit Score: 226.94  E-value: 2.03e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784   1 MLILLGYLVVLGTVFGGYLMTGGSLGALYQPAELVIIAGAGIGSFIVGNNGKAIKGTLKALPLLFRRSKYTKAMYMDLLA 80
Cdd:PRK12482   1 MQKLFGLLVVMGCVFGGYLMSGGSLSSIWQPGEIIIILGAGIGAMILGNPKSVLKEMWHQIKGVIRRKEYGVEFQRQLLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784  81 LLYRLMAKSRQMGMFSLERDIENPRESEIFASYPRILADSVMLDFIVDYLRLIISGHMNTFEIEALMDEEIETHESEAEV 160
Cdd:PRK12482  81 LLYELLEMVQEGGLKRLDQHIEIPEESSLFQKYPLILQQKRLITFISDNFRLMAMGKINQHELEGILDQELDAVEEELLQ 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784 161 PANSLALVGDSLPAFGIVAAVMGVVHALGSADRPAAELGALIAHAMVGTFLGILLAYGFISPLATVLRQKSAETSKMMQC 240
Cdd:PRK12482 161 PSRSLQRIAEAMPGFGICAAVLGIIITMQSIDGSIAEIGLKVAAALVGTFLGVFICYCLMDPLANAMEQEIKKELSLLEC 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 985000784 241 VKVTLLSNLNGYAPPIAVEFGRKTLYSSERPSFIELEEHVRAV 283
Cdd:PRK12482 241 VRTVLVAHVAGKPTLLAVDAGRKLLPLDNKPTFATLDSWINAM 283
MotA_N pfam20560
Motility protein A N-terminal; This entry represents the N-terminal domain of Motility protein ...
 4-93 2.22e-39

Motility protein A N-terminal; This entry represents the N-terminal domain of Motility protein A (MotA). MotA is a membrane protein that forms the stator element of the flagellar motor complex together with MotB with 5:2 stoichiometry, which couples ion flow across the cytoplasmic membrane to generate torque, and thus, it is required for rotation of the flagellar motor. This domain contains conserved torque-generating charged residues at the C-terminal and is adjacent pfam01618, which represents MotA TMH3 and TMH4.


Pssm-ID: 466709 [Multi-domain]  Cd Length: 91  Bit Score: 132.91  E-value: 2.22e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784    4 LLGYLVVLGTVFGGYLMTGGSLGALYQ-PAELVIIAGAGIGSFIVGNNGKAIKGTLKALPLLFRRSKYTKAMYMDLLALL 82
Cdd:pfam20560   1 IIGIVVVLGCVFGGYALAGGHLGVLWQlPFELLIIGGAAIGAFIIANPMKVLKATLKALPKAFKGSKYKKADYLDLLALL 80

                          90
                  ....*....|.
gi 985000784   83 YRLMAKSRQMG 93
Cdd:pfam20560  81 YELLRKARKEG 91
PRK08124 PRK08124
flagellar motor protein MotA; Validated
 4-278 3.24e-21

flagellar motor protein MotA; Validated


Pssm-ID: 181238 [Multi-domain]  Cd Length: 263  Bit Score: 90.40  E-value: 3.24e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784   4 LLGYLVVLGTVFGGYLMTGGSLGALYQPAELVIIAGAGIGSFIVGNNGKAIKGTLKALPLLFRRSKytKAMYMDLLALLY 83
Cdd:PRK08124   6 IIGLILGLIAVVVGMVVKGASLAVLLNPAAILIIIVGTIAAVMIAFPMSELKKVPKLFKVLFKEKK--DPSKEELIEQFV 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784  84 RLMAKSRQMGMFSLER---DIENPreseifasypriladsvmldFIVDYLRLIISGHMNTFeIEALMDEEIETHESEAEV 160
Cdd:PRK08124  84 EWASESRREGLLALEAqldEIDDP--------------------FLKRGLKMVIDGQSPEF-IRDVLEEEIEAMEERHAA 142

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784 161 PANSLALVGDSLPAFGIVAAVMGVVHALGSADRPAAeLGALIAHAMVGTFLGILLAYGFISPLATVLRQKSAETSKMMQC 240
Cdd:PRK08124 143 GAAIFTQAGTYAPTLGVLGAVIGLIAALGNLSDIEK-LGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKEEIELKYI 221

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 985000784 241 VKVTLLSNLNGYAPPIAVEFGRKTLYSSERPSFIELEE 278
Cdd:PRK08124 222 IIEGVLAIQEGNAPRVIEEKLLGYLSPKERKKLEEGAE 259
PRK08456 PRK08456
flagellar motor protein MotA; Validated
 4-254 2.05e-13

flagellar motor protein MotA; Validated


Pssm-ID: 181434 [Multi-domain]  Cd Length: 257  Bit Score: 68.60  E-value: 2.05e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784   4 LLGYLVVLGTVFGGYLMTGGSLGALYQPAELVIIAGAGIGSFIVGNNGKAIKGTLKALPLLFrrsKYTKAMYMDLLALLY 83
Cdd:PRK08456   6 ILGMVLAVASISVGDILEGGNPLHVIHLSSFIIVVPTALFAAMTATHKKYVKAAYKELKIVF---KNPGVNLNERIKQLV 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784  84 RLMAKSRQMGMFSLERDIENPREseifasypriladsvmlDFIVDYLRLIISGhMNTFEIEALMDEEIETHESEAEVPAN 163
Cdd:PRK08456  83 ELATLARKDGVLALEGRVAQIED-----------------EFLKNGLSMLVDG-KDLEEIKESMEIQIEEMEEYYHGAAH 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784 164 SLALVGDSLPAFGIVAAVMGVVHALGSADRPaAELGALIAHAMVGTFLGILLAYGFISPLATVLRQKSAETSKMMQCVKV 243
Cdd:PRK08456 145 YWITAGETCPTMGLVGAVMGLMLALQKLDNP-AEMAAGIAGAFTATVTGIMGSYALFGPWGHKLKAKSKDIIKEKTVILE 223

                        250
                 ....*....|.
gi 985000784 244 TLLSNLNGYAP 254
Cdd:PRK08456 224 GILGIAEGANP 234
motC PRK09109
flagellar motor protein; Reviewed
 2-228 1.29e-12

flagellar motor protein; Reviewed


Pssm-ID: 181654 [Multi-domain]  Cd Length: 246  Bit Score: 66.12  E-value: 1.29e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784   2 LILLGYLVVLGTVFGGYLMTGGSLGALYQPAELVIIAGAGIGSFIVGNNGKAIKGTLKALPLLFrrskytKAMYMDLLAL 81
Cdd:PRK09109   4 LSLIGLILAFVAIIGGQVLEGGHLGSLLNGPAFLIVIGGTLGAVLLQTPLAVFKRAFKILRWVF------FPPRSDLEGG 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784  82 LYRLM---AKSRQMGMFSLERDIENPRESeifasypriladsvmldFIVDYLRLIISGhMNTFEIEALMDEEIETHESEA 158
Cdd:PRK09109  78 IDRIVewsNTARKEGLLGLEDVADREPDP-----------------FARKGLQLLVDG-AEPESIRSVLEVEIDTQEHRD 139

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784 159 EVPANSLALVGDSLPAFGIVAAVMGVVHALGSADRPaAELGALIAHAMVGTFLGILLAYGFISPLATVLR 228
Cdd:PRK09109 140 LQAAKVFESMGGYAPTIGIIGAVMGLIHVMENLADP-SQLGSGIAVAFVATIYGVASANLLFLPVANKLK 208
PRK06743 PRK06743
flagellar motor protein MotP; Reviewed
 5-224 2.37e-07

flagellar motor protein MotP; Reviewed


Pssm-ID: 136027  Cd Length: 254  Bit Score: 50.74  E-value: 2.37e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784   5 LGYLVVLGTVFGGYLMTGGSLGAL---YQPAELVIIAGAGIGSFIVGNNGKAIKGTLKALPLLFRRSKYTKAMYMDLLAL 81
Cdd:PRK06743   1 VGIIVGFAIVIAAIMLGGGGIKAFknfLDVSSILIVIGGTTATIVVAYRFGEIKKYTKSIFTVLHRREEDLEQLTDLFVD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784  82 LYRlmaKSRQMGMFSLERD---IENPreseifasypriladsvmldFIVDYLRLIISGHmNTFEIEALMDEEIETHESEA 158
Cdd:PRK06743  81 FSK---KSKKHGLLSLEVDgeqVDNP--------------------FIQKGIRLMLSGY-DEDELKEVLMKDVETEVYEL 136

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 985000784 159 EVPANSLALVGDSLPAFGIVAAVMGVVHALGSAdRPAAELGALIAHAMVGTFLGILLAYGFISPLA 224
Cdd:PRK06743 137 RKGAALLDKIGDFAPAWGMIGTLIGLIIMLQNL-QDTSQIGTGMAVAMLTTLYGSVLANMIAIPLA 201
PRK06926 PRK06926
flagellar motor protein MotP; Reviewed
 3-233 4.24e-06

flagellar motor protein MotP; Reviewed


Pssm-ID: 180755 [Multi-domain]  Cd Length: 271  Bit Score: 47.02  E-value: 4.24e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784   3 ILLGYLVVLGTVFGGYLMTGgsLGALYQPAELVIIAGAGIGSFIVGNNGKAIKGTLKALPLLFRRSKYTkamYMDLLALL 82
Cdd:PRK06926  12 IFLGITIVVLGVISNSGLSG--FLSFIDLTSILIVTGGLCAALFISFSPKDLKLAPRVLKQAFQSQEDD---VEELVQTF 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784  83 YRLMAKSRQMGMFSLE---RDIENPreseifasypriladsvmldFIVDYLRLIISGhMNTFEIEALMDEEIETHESEAE 159
Cdd:PRK06926  87 VSLSEKARREGLLSLEaelEEVKDP--------------------FIKKGLLLAIDG-WEPETIRDIMMAEIAAMEERHR 145

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 985000784 160 VPANSLALVGDSLPAFGIVAAVMGVVHALGSADRPAAeLGALIAHAMVGTFLGILLAYGFISPLATVLRQKSAE 233
Cdd:PRK06926 146 KGRRIFEKAGEYAPAWGMIGTLVGLVLMLKNLNDPST-LGPNMAIALLTTLYGTLLANLVFLPIAAKLEEKTEE 218
MotA_ExbB pfam01618
MotA/TolQ/ExbB proton channel family; This family groups together integral membrane proteins ...
 118-216 5.68e-06

MotA/TolQ/ExbB proton channel family; This family groups together integral membrane proteins that appear to be involved translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flageller motor that uses a proton gradient to generate rotational motion in the flageller. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.


Pssm-ID: 460268  Cd Length: 120  Bit Score: 44.78  E-value: 5.68e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985000784  118 ADSVMLDFIVDYLRLIISGHmNTFEIEALMDEEIETHESEAEVPANSLALVGDSLPAFGIVAAVMGVVHA---LGSADRP 194
Cdd:pfam01618   2 ANSPEDRFLKKGLQLVVDGT-DPEEIRRALEEAIDREEERLERGLSILATIGSLAPLLGLLGTVLGLIHAfqnLGDAGPG 80

                          90       100
                  ....*....|....*....|..
gi 985000784  195 AAELGALIAHAMVGTFLGILLA 216
Cdd:pfam01618  81 LSALAPGIAEALIATAYGLFVA 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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