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Concise Results
Standard Results
Full Results
exonuclease V subunit gamma [Escherichia coli str. K-12 substr. MG1655]
Protein Classification
exodeoxyribonuclease V subunit gamma ( domain architecture ID 11485181 )
exodeoxyribonuclease V subunit gamma (RecC) is a component of the heterotrimeric RecBCD helicase/nuclease complex that is essential for double-strand DNA break repair and recombination
List of domain hits
Name
Accession
Description
Interval
E-value
recC
PRK11069 exodeoxyribonuclease V subunit gamma;
1-1122
0e+00
exodeoxyribonuclease V subunit gamma;
Pssm-ID: 236835 [Multi-domain]
Cd Length: 1122
Bit Score: 2324.54
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 1 M LR VYHSN R LDVL E ALM E F IV ERE R LDDPFEPEMILVQS T GMAQWLQM T L S QKFGIAANIDFPLPA S FIWDMF V RVLP E I 80
Cdd:PRK11069 1 M FT VYHSN Q LDVL K ALM V F LI ERE P LDDPFEPEMILVQS P GMAQWLQM E L A QKFGIAANIDFPLPA T FIWDMF T RVLP D I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 81 PKESAFNK QS M S WKLMTLLPQLLER ED FT L LRHYLTDD S DKRKLFQL SSKA ADLFDQYLVYRP D WLA Q WE T G H LVEGLG E 160
Cdd:PRK11069 81 PKESAFNK EA M T WKLMTLLPQLLER PE FT P LRHYLTDD E DKRKLFQL AARI ADLFDQYLVYRP E WLA S WE A G Q LVEGLG D 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 161 AQ A WQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLP S RVFICGISALPPVYLQALQALGKHI E IHLLF 240
Cdd:PRK11069 161 AQ P WQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLP K RVFICGISALPPVYLQALQALGKHI D IHLLF 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 241 TNPCRYYWGDI K DPA Y LAKLL T RQRRHSFEDRELPLFRDSENA G QLFNSDGEQDVGNPLLASWGKLGRD YI YLLS D LESS 320
Cdd:PRK11069 241 TNPCRYYWGDI Q DPA F LAKLL A RQRRHSFEDRELPLFRDSENA E QLFNSDGEQDVGNPLLASWGKLGRD NL YLLS Q LESS 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 321 QELDAFVD VT PDNLLHNIQ S DILELE NR AV A GVN I EEFSRSD N KRPLDP L D S S IT FHVCHSPQREVEVLHDRLLAMLE E D 400
Cdd:PRK11069 321 QELDAFVD IE PDNLLHNIQ A DILELE DH AV I GVN D EEFSRSD H KRPLDP D D R S LS FHVCHSPQREVEVLHDRLLAMLE A D 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 401 PTLTPRDIIVMVADIDSYSPFIQAVFG S APA D RYLP Y AISDRRARQ S HPVL E AFISLLSLPDSRF VS EDVLALL D VP V LA 480
Cdd:PRK11069 401 PTLTPRDIIVMVADIDSYSPFIQAVFG N APA E RYLP F AISDRRARQ A HPVL Q AFISLLSLPDSRF TA EDVLALL E VP A LA 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 481 ARF D ITEEGLRYLRQWV N ESGIRWG I DDDNVRELELPATGQHTWRFGLTRMLLGYAMESA Q GEWQ S VLPYDESSGLIAEL 560
Cdd:PRK11069 481 ARF A ITEEGLRYLRQWV E ESGIRWG L DDDNVRELELPATGQHTWRFGLTRMLLGYAMESA A GEWQ G VLPYDESSGLIAEL 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 561 V GHLASLLMQLNIWRRGLAQ E RPLEEWLPVCR DM L NA FFLPDAETEAA MT LIEQQWQAII A EGL G AQYGDAVPLSLLRDE 640
Cdd:PRK11069 561 A GHLASLLMQLNIWRRGLAQ P RPLEEWLPVCR QL L DD FFLPDAETEAA LA LIEQQWQAII E EGL D AQYGDAVPLSLLRDE 640
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 641 LAQRLDQERISQRFLAGPVN I CTLMPMRSIPFKVVCLLGMNDGVYPR Q L A PLGFDLMSQKPKRGDRSRRDDDRYLFLEAL 720
Cdd:PRK11069 641 LAQRLDQERISQRFLAGPVN F CTLMPMRSIPFKVVCLLGMNDGVYPR T L P PLGFDLMSQKPKRGDRSRRDDDRYLFLEAL 720
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 721 I SAQQ K LYISYIGRSIQDNSERFPSVLV Q EL ID YIGQS HY LPGDEALNCDES E ARVKAHLTCLHTRMPFDPQN Y QPGE R Q 800
Cdd:PRK11069 721 L SAQQ Q LYISYIGRSIQDNSERFPSVLV S EL LE YIGQS YC LPGDEALNCDES A ARVKAHLTCLHTRMPFDPQN F QPGE Q Q 800
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 801 SYAREWLPAASQ A GKAH SE FVQPLPF TL PE TVP L ET LQRFW A HPVRAFFQ M RL Q VNFRTE D SE I PD T EPF I L E GLSRYQ I 880
Cdd:PRK11069 801 SYAREWLPAASQ Q GKAH PD FVQPLPF EP PE ELT L DE LQRFW R HPVRAFFQ R RL K VNFRTE E SE L PD E EPF T L D GLSRYQ L 880
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 881 NQQLLNAL V EQDDAERLFRR F RAAG D LPYGAFGEIFWETQCQEMQQLADRV I ACRQPGQS M EIDL AC NGVQ I TGWLPQVQ 960
Cdd:PRK11069 881 NQQLLNAL I EQDDAERLFRR Q RAAG K LPYGAFGEIFWETQCQEMQQLADRV R ACRQPGQS L EIDL TL NGVQ L TGWLPQVQ 960
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 961 PDGLLRWRP S LLSVA Q G M QLWLEHLVYCASGGNGESRLF L RK D GEWRFPPLAAEQA LH YLSQLIEGYREGMSAPLL V LP E 1040
Cdd:PRK11069 961 PDGLLRWRP G LLSVA D G L QLWLEHLVYCASGGNGESRLF G RK E GEWRFPPLAAEQA KQ YLSQLIEGYREGMSAPLL L LP K 1040
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 1041 SGGAWLK T CYD AQ NDA M LDD DS T L QKAR T K F LQA Y EGNMMVRGEGDDI WY QRLWRQL TP ET M EAI V EQ S QR F LLPLFRFN 1120
Cdd:PRK11069 1041 SGGAWLK A CYD RE NDA I LDD EE T Q QKAR K K L LQA W EGNMMVRGEGDDI YI QRLWRQL DD ET L EAI I EQ A QR Y LLPLFRFN 1120
..
gi 985001655 1121 QS 1122
Cdd:PRK11069 1121 QS 1122
Name
Accession
Description
Interval
E-value
recC
PRK11069 exodeoxyribonuclease V subunit gamma;
1-1122
0e+00
exodeoxyribonuclease V subunit gamma;
Pssm-ID: 236835 [Multi-domain]
Cd Length: 1122
Bit Score: 2324.54
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 1 M LR VYHSN R LDVL E ALM E F IV ERE R LDDPFEPEMILVQS T GMAQWLQM T L S QKFGIAANIDFPLPA S FIWDMF V RVLP E I 80
Cdd:PRK11069 1 M FT VYHSN Q LDVL K ALM V F LI ERE P LDDPFEPEMILVQS P GMAQWLQM E L A QKFGIAANIDFPLPA T FIWDMF T RVLP D I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 81 PKESAFNK QS M S WKLMTLLPQLLER ED FT L LRHYLTDD S DKRKLFQL SSKA ADLFDQYLVYRP D WLA Q WE T G H LVEGLG E 160
Cdd:PRK11069 81 PKESAFNK EA M T WKLMTLLPQLLER PE FT P LRHYLTDD E DKRKLFQL AARI ADLFDQYLVYRP E WLA S WE A G Q LVEGLG D 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 161 AQ A WQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLP S RVFICGISALPPVYLQALQALGKHI E IHLLF 240
Cdd:PRK11069 161 AQ P WQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLP K RVFICGISALPPVYLQALQALGKHI D IHLLF 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 241 TNPCRYYWGDI K DPA Y LAKLL T RQRRHSFEDRELPLFRDSENA G QLFNSDGEQDVGNPLLASWGKLGRD YI YLLS D LESS 320
Cdd:PRK11069 241 TNPCRYYWGDI Q DPA F LAKLL A RQRRHSFEDRELPLFRDSENA E QLFNSDGEQDVGNPLLASWGKLGRD NL YLLS Q LESS 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 321 QELDAFVD VT PDNLLHNIQ S DILELE NR AV A GVN I EEFSRSD N KRPLDP L D S S IT FHVCHSPQREVEVLHDRLLAMLE E D 400
Cdd:PRK11069 321 QELDAFVD IE PDNLLHNIQ A DILELE DH AV I GVN D EEFSRSD H KRPLDP D D R S LS FHVCHSPQREVEVLHDRLLAMLE A D 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 401 PTLTPRDIIVMVADIDSYSPFIQAVFG S APA D RYLP Y AISDRRARQ S HPVL E AFISLLSLPDSRF VS EDVLALL D VP V LA 480
Cdd:PRK11069 401 PTLTPRDIIVMVADIDSYSPFIQAVFG N APA E RYLP F AISDRRARQ A HPVL Q AFISLLSLPDSRF TA EDVLALL E VP A LA 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 481 ARF D ITEEGLRYLRQWV N ESGIRWG I DDDNVRELELPATGQHTWRFGLTRMLLGYAMESA Q GEWQ S VLPYDESSGLIAEL 560
Cdd:PRK11069 481 ARF A ITEEGLRYLRQWV E ESGIRWG L DDDNVRELELPATGQHTWRFGLTRMLLGYAMESA A GEWQ G VLPYDESSGLIAEL 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 561 V GHLASLLMQLNIWRRGLAQ E RPLEEWLPVCR DM L NA FFLPDAETEAA MT LIEQQWQAII A EGL G AQYGDAVPLSLLRDE 640
Cdd:PRK11069 561 A GHLASLLMQLNIWRRGLAQ P RPLEEWLPVCR QL L DD FFLPDAETEAA LA LIEQQWQAII E EGL D AQYGDAVPLSLLRDE 640
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 641 LAQRLDQERISQRFLAGPVN I CTLMPMRSIPFKVVCLLGMNDGVYPR Q L A PLGFDLMSQKPKRGDRSRRDDDRYLFLEAL 720
Cdd:PRK11069 641 LAQRLDQERISQRFLAGPVN F CTLMPMRSIPFKVVCLLGMNDGVYPR T L P PLGFDLMSQKPKRGDRSRRDDDRYLFLEAL 720
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 721 I SAQQ K LYISYIGRSIQDNSERFPSVLV Q EL ID YIGQS HY LPGDEALNCDES E ARVKAHLTCLHTRMPFDPQN Y QPGE R Q 800
Cdd:PRK11069 721 L SAQQ Q LYISYIGRSIQDNSERFPSVLV S EL LE YIGQS YC LPGDEALNCDES A ARVKAHLTCLHTRMPFDPQN F QPGE Q Q 800
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 801 SYAREWLPAASQ A GKAH SE FVQPLPF TL PE TVP L ET LQRFW A HPVRAFFQ M RL Q VNFRTE D SE I PD T EPF I L E GLSRYQ I 880
Cdd:PRK11069 801 SYAREWLPAASQ Q GKAH PD FVQPLPF EP PE ELT L DE LQRFW R HPVRAFFQ R RL K VNFRTE E SE L PD E EPF T L D GLSRYQ L 880
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 881 NQQLLNAL V EQDDAERLFRR F RAAG D LPYGAFGEIFWETQCQEMQQLADRV I ACRQPGQS M EIDL AC NGVQ I TGWLPQVQ 960
Cdd:PRK11069 881 NQQLLNAL I EQDDAERLFRR Q RAAG K LPYGAFGEIFWETQCQEMQQLADRV R ACRQPGQS L EIDL TL NGVQ L TGWLPQVQ 960
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 961 PDGLLRWRP S LLSVA Q G M QLWLEHLVYCASGGNGESRLF L RK D GEWRFPPLAAEQA LH YLSQLIEGYREGMSAPLL V LP E 1040
Cdd:PRK11069 961 PDGLLRWRP G LLSVA D G L QLWLEHLVYCASGGNGESRLF G RK E GEWRFPPLAAEQA KQ YLSQLIEGYREGMSAPLL L LP K 1040
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 1041 SGGAWLK T CYD AQ NDA M LDD DS T L QKAR T K F LQA Y EGNMMVRGEGDDI WY QRLWRQL TP ET M EAI V EQ S QR F LLPLFRFN 1120
Cdd:PRK11069 1041 SGGAWLK A CYD RE NDA I LDD EE T Q QKAR K K L LQA W EGNMMVRGEGDDI YI QRLWRQL DD ET L EAI I EQ A QR Y LLPLFRFN 1120
..
gi 985001655 1121 QS 1122
Cdd:PRK11069 1121 QS 1122
RecC
COG1330 Scaffold subunit RecC of the DNA repair enzyme RecBCD (exonuclease V) [Replication, ...
1-1122
0e+00
Scaffold subunit RecC of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440941 [Multi-domain]
Cd Length: 1087
Bit Score: 1582.93
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 1 ML RV YHSNRL D VL EA L MEFIVERER L D DPF E PE M ILVQS T GMA Q WLQ MT L SQK FGIAANI D FPLPASFIW DM F VR VLP EI 80
Cdd:COG1330 1 ML HL YHSNRL E VL AD L LAALLAAQP L A DPF A PE V ILVQS P GMA R WLQ LE L AER FGIAANI E FPLPASFIW QL F RA VLP DV 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 81 P K ES A F N K QSMS W K LM T LLP Q LL ERED F TL L RH YL T DD S D K RK LF QL SSKA ADLFDQYLVYRPDWLA Q WE T G HL V E - G L G 159
Cdd:COG1330 81 P E ES P F S K EALT W R LM R LLP E LL DEPE F AP L AR YL G DD E D Q RK RY QL AGRL ADLFDQYLVYRPDWLA A WE A G ED V D g P L P 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 160 EA QAWQA P LW K ALV EY T HQ L g Q PR WHRANLYQRFI ET L E S ATTC P P GLP S RVF IC GISALPPVYL QA LQAL GK HI EI HL L 239
Cdd:COG1330 161 DD QAWQA A LW R ALV AE T GA L - Q SA WHRANLYQRFI AA L R S GEPR P A GLP E RVF VF GISALPPVYL EV LQAL AR HI DV HL F 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 240 FT NPCR Y YWGDI K D PAY LA K L LT R Q rrhsfedrelplfrdsenagqlf NS D GEQD VGNPLLASWGK L GRD YIY LL SD LE - 318
Cdd:COG1330 240 LL NPCR E YWGDI V D ARE LA R L AA R S ----------------------- DD D DLLE VGNPLLASWGK Q GRD FLD LL AE LE d 296
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 319 S SQE L DAFVD VT PD N LLH NI Q S DILEL ENR A VAG vnieefsrsd N KRPL D P L D S S ITF H V CHSP Q REVEVLHD R LLA MLE 398
Cdd:COG1330 297 E SQE I DAFVD PP PD T LLH QL Q A DILEL RPP A EGA ---------- S KRPL A P D D R S LQV H A CHSP L REVEVLHD Q LLA LFA 366
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 399 E DPTLTPRDI I VMV A DI DS Y S P F IQAVFG S AP A D - R YL P YA I S DR R ARQ SH P V L E AF IS LL S LP D SRF VSED VL A LL D VP 477
Cdd:COG1330 367 D DPTLTPRDI L VMV P DI EA Y A P Y IQAVFG Q AP P D p R RI P FS I A DR S ARQ EN P L L A AF LQ LL D LP Q SRF TASE VL D LL E VP 446
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 478 VL A A RF DIT E EG L RY LR Q WV N E S GIRWG I D DDNVRE L E LPAT G Q H TWRFGL T R M LLGYAM ESAQ G E WQ SV LPYDE SS GL I 557
Cdd:COG1330 447 AV A R RF GLD E DD L ER LR R WV A E A GIRWG L D AAHRAR L G LPAT E Q N TWRFGL D R L LLGYAM GEEA G L WQ GI LPYDE VE GL D 526
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 558 AEL V G H LA SL L MQ L NI WR RG LA QE R P L E EWL PVC R DM L NA FF L PD A E T E A A MTLIEQQWQAIIAEGLG A Q Y GDAV PL SLL 637
Cdd:COG1330 527 AEL L G R LA EF L DR L AA WR QR LA EP R T L A EWL ERL R AL L DD FF A PD E E D E W A LAQLRRALAELAEQAAE A G Y DEPL PL AVV 606
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 638 RD E LA Q RLD QERIS QRFLAG P V NI CTLMPMRSIPF K VVCLLGMNDG VY PRQ LA PLGFDLM SQK P K RGDRSRRDDDRYLFL 717
Cdd:COG1330 607 RD A LA A RLD GRPTR QRFLAG G V TF CTLMPMRSIPF R VVCLLGMNDG DF PRQ QP PLGFDLM ARH P R RGDRSRRDDDRYLFL 686
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 718 EAL I SA QQK LYISY I GRSI Q DNSER F PSVLV Q EL I DY IG Q SHY LPGD ealncde S EA R VK AHL TCL H TRM PF D P QNYQ PG 797
Cdd:COG1330 687 EAL L SA RER LYISY V GRSI R DNSER P PSVLV S EL L DY LA Q GFA LPGD ------- S GE R LR AHL VVR H PLQ PF S P RYFE PG 759
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 798 -- ERQ SY AR EWL P AA SQA G KAHSE ---- FV QPLP FTL P - E T V P L ET L Q RF WA HPVRAF FQM RL Q V NFRT E DS E IP D T EPF 870
Cdd:COG1330 760 sp RLF SY DA EWL A AA RAL G QPRAP appf LA QPLP PPE P e E E V T L DD L L RF LR HPVRAF LRQ RL G V RLPE E EE E LE D A EPF 839
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 871 I L E GL S RYQ IN Q Q LL N AL VEQ DD AER LF R R F RA A G D LP Y GAFGE IFW E TQCQ E MQQ LA DRVIACRQ -- P GQ S MEI DL ACN 948
Cdd:COG1330 840 E L D GL E RYQ LR Q R LL E AL LAG DD PAE LF A R L RA R G L LP P GAFGE LLL E RLLE E VAA LA AALRPLLA gp P LE S LDV DL DLG 919
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 949 GV QI TGWL PQ V QP DGL L RWRP SL L SVAQGMQ LWLEHL VY CA S G GN G - ES R L FL R k DG E WR FP PL AA E Q A LHY L SQ L IEG Y 1027
Cdd:COG1330 920 GV RL TGWL DG V RG DGL V RWRP GK L KAKDLLR LWLEHL AL CA A G PP G g ES V L VG R - DG V WR LA PL PP E E A RAL L AE L LAL Y 998
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 1028 R E G MSA PL LVL P ESGG AW LKT CYD AQ ndamlddds T LQ KA RTKFL QA Y EG NMM V R GEGDD IWY QR LW R Q L T P - E TM E AIV 1106
Cdd:COG1330 999 R Q G LRQ PL PLF P KTAW AW AEA CYD GK --------- T QE KA LEAAR QA W EG GDF V P GEGDD PYL QR VF R G L D P l E LD E RFA 1069
1130
....*....|....*.
gi 985001655 1107 EQSQ R F LLPL FRFNQS 1122
Cdd:COG1330 1070 ALAE R L LLPL LAHLEA 1085
recC
TIGR01450 exodeoxyribonuclease V, gamma subunit; This model describes the gamma subunit of ...
2-1088
0e+00
exodeoxyribonuclease V, gamma subunit; This model describes the gamma subunit of exodeoxyribonuclease V. Species containing this protein should also have the alpha (TIGR01447) and beta (TIGR00609) subunits. Candidates from Borrelia and from the Chlamydias differ dramatically and score between trusted and noise cutoffs. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273633 [Multi-domain]
Cd Length: 1060
Bit Score: 1525.05
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 2 L R V YHSNRLDVL E AL MEFIVERER LDDPFEPE M ILVQS T GMAQWLQMTL SQKF G I AAN ID FPLPASFIW D MFV R VLPEIP 81
Cdd:TIGR01450 1 F R L YHSNRLDVL A AL LAALLRDPP LDDPFEPE L ILVQS P GMAQWLQMTL AEDL G V AAN LE FPLPASFIW Q MFV A VLPEIP 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 82 K ESAFNK QS MSW K LM T LLP Q LLER ED F TL LRHYL T DDSD K RK LF QL SSKA ADLFDQYLVYRPDWLA Q WE T G HL VEG L G EA 161
Cdd:TIGR01450 81 E ESAFNK EV MSW R LM A LLP A LLER PE F RT LRHYL A DDSD L RK RY QL AERL ADLFDQYLVYRPDWLA A WE A G DD VEG P G DL 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 162 QAWQA P LW K ALV EYTHQL GQP R w HRANL Y QRFIE T L E S A TT C PPGLP S R V FI C GISALPP V YLQAL Q AL GK H IEI HL LF T 241
Cdd:TIGR01450 161 QAWQA I LW R ALV AGVGAD GQP T - HRANL H QRFIE R L R S G TT H PPGLP A R L FI F GISALPP T YLQAL A AL AQ H CDV HL FL T 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 242 NPCR Y YWGDI K D PA YLA K LLTR Q R rhs FE D RE LPL FR D S E nagqlfnsdg E QDV G N PLLASWGKLGRD Y IYLL SD LE S SQ 321
Cdd:TIGR01450 240 NPCR E YWGDI I D FK YLA R LLTR H R --- GA D PL LPL RQ D L E ---------- E HAA G H PLLASWGKLGRD F IYLL PE LE Q SQ 306
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 322 E L DAF VDV TPD N LLH NI Q S DIL E LE N R A V agvnieefsrs D N K R P LD PLD S SI T FH V CHSP Q REVEVLHDRLLA M LEEDP 401
Cdd:TIGR01450 307 E I DAF LEA TPD T LLH QL Q A DIL H LE P R P V ----------- D A K L P SA PLD R SI Q FH A CHSP L REVEVLHDRLLA L LEEDP 375
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 402 TL T PRDIIVMV A DIDSY S P F I Q AVFG S AP A D - R Y LPY AI SDRR A RQ SH P V LEAFI S LL S LP D SRF VSEDV LALLD V P VLA 480
Cdd:TIGR01450 376 TL Q PRDIIVMV P DIDSY A P Y I E AVFG Q AP V D a R F LPY SL SDRR L RQ RE P L LEAFI H LL D LP E SRF TASEI LALLD I P PVR 455
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 481 ARF D I T E EG L RY LR Q WV N E S GIRWG I D DDNV REL E LPAT G QH - TWRFGL T RMLLGYAM ESAQ G E WQ S VLPYD ESS GL I AE 559
Cdd:TIGR01450 456 ARF G I D E DD L ET LR R WV A E A GIRWG L D AEHR REL G LPAT D QH n TWRFGL E RMLLGYAM GEDA G I WQ G VLPYD DVG GL Q AE 535
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 560 L V G H LA SL L MQ L NI WRRGLAQ E RPLE E WL PVC RD M L N A F F LP D AE TE A A M T LI E QQ W QAII AE GL GAQ YGDAV PL SLL RD 639
Cdd:TIGR01450 536 L A G R LA EF L ER L SH WRRGLAQ P RPLE Q WL ERL RD L L D A L F AV D DT TE L A L T QL E RE W VDWQ AE AA GAQ FAQPL PL EVV RD 615
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 640 E LA QR LD Q E RI S Q RFLAG P VN I CTL M PMRSIPF K VVCLLGMNDG V YPRQ LA P L GFDLM SQK P KR GDRSRRDDDRYLFLEA 719
Cdd:TIGR01450 616 H LA AL LD D E PT S A RFLAG G VN F CTL V PMRSIPF R VVCLLGMNDG D YPRQ QH P A GFDLM ARE P RK GDRSRRDDDRYLFLEA 695
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 720 L I SAQ QK LYISY I GRSI Q DNSER F PSVL VQ ELIDY IG Q S HYL P GD ealncdes E AR VK A H LT CL H TRM PF D PQN Y QPG E R 799
Cdd:TIGR01450 696 L L SAQ EQ LYISY V GRSI R DNSER P PSVL LG ELIDY LV Q T HYL D GD -------- S AR LA A R LT EQ H PLQ PF S PQN F QPG G R 767
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 800 Q --- SYAREWL P AA SQ A GKAHSE F V QPLP --- FTL P ETV PL ET L Q RFWAHPV R AFFQ M RL Q V N F RT E DSE I P D T EPF I L E 873
Cdd:TIGR01450 768 L kpf SYAREWL A AA QA A EGKRPD F D QPLP grp AEP P AEL PL AD L I RFWAHPV K AFFQ Q RL G V S F PW E VET I E D S EPF E L D 847
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 874 GLSRYQIN Q QLL NAL v E QDD A ER ---- L FR R F RA A G D LP Y GAFG E IF WET Q C Q EMQ QLA DR V - IACR QP G QS M EIDL ACN 948
Cdd:TIGR01450 848 GLSRYQIN E QLL RFA - L QDD E ER dlaq L AA R L RA R G L LP S GAFG R IF AKE Q Q Q RAR QLA TA V l AHRK QP P QS V EIDL DLQ 926
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 949 - G VQIT GWL P Q VQ PDGL L RWR PSL L SVA Q GMQL WLEHL VY CASG GNG ES R LF L RK D G EWR -- F PPL - A AEQAL H YLS Q L I 1024
Cdd:TIGR01450 927 d G IRLS GWL G Q LY PDGL V RWR YGK L NSP Q LLRA WLEHL IL CASG PPV ES V LF C RK V G RLH ia L PPL v P AEQAL A YLS E L V 1006
1050 1060 1070 1080 1090 1100
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 985001655 1025 E G YR E GM SA PL LVL P ESGG AW LKTC YDAQ N damldddstl Q KA RT K FLQ AYEGN MMVR GEGD DI 1088
Cdd:TIGR01450 1007 E L YR Q GM RQ PL PFP P KTAL AW AEAR YDAQ D ---------- E KA LK K ARE AYEGN FFRK GEGD AP 1060
RecC_C-like
cd22353 C-terminal nuclease-like domain of exodeoxyribonuclease V subunit RecC and similar proteins; ...
834-1116
1.01e-148
C-terminal nuclease-like domain of exodeoxyribonuclease V subunit RecC and similar proteins; Exodeoxyribonuclease V subunit beta (RecC) is part of the RecBCD complex that processes DNA ends resulting from a double-strand break. Its C-terminal domain contacts the two separate strands of the DNA substrate and may be responsible for stabilizing RecD interactions with the complex. It belongs to a superfamily of PDDEXK nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.
Pssm-ID: 411757 [Multi-domain]
Cd Length: 283
Bit Score: 446.22
E-value: 1.01e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 834 L ET L Q RFW A HPVR A FFQ M RL Q V N F RT E DS E I PD T EPF I L E GL S RYQ I NQQLLNAL V E QD D AER L FR R F RA A G D LPYGAFG 913
Cdd:cd22353 2 L DE L L RFW R HPVR Y FFQ R RL K V F F EQ E ET E L PD E EPF S L D GL E RYQ L NQQLLNAL I E GK D IDQ L YQ R Y RA S G K LPYGAFG 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 914 E IF WE T Q CQ EMQ Q LA DRVIAC R QPGQSM EI D L AC NG VQI TGWL P QVQ P DGLLRWRP SL L SVAQ G MQ LWLEHL V YCA S GG N 993
Cdd:cd22353 82 E LY WE K Q LK EMQ E LA EKIRPL R TELKDL EI N L KI NG IRL TGWL K QVQ Q DGLLRWRP GK L NAKD G LS LWLEHL I YCA L GG K 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 994 GESRL FL R KDGE WRFPPL A A E QA LH YL SQ LIEGY RE GM SA PLL V LP E SGGAWL KT CYD AQ N D a MLD D DS T LQ KAR T K F LQ 1073
Cdd:cd22353 162 GESRL IG R NNSI WRFPPL S A D QA KK YL EK LIEGY LQ GM NQ PLL L LP K SGGAWL EA CYD KK N Q - IKW D EN T QE KAR K K L LQ 240
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 985001655 1074 A YE GN MMVR GEGDD IWY QRL WR QL TP E TM E A I VEQSQ R F LLPL 1116
Cdd:cd22353 241 A WN GN YYIS GEGDD PYI QRL IP QL NE E LI E Q I IKLAE R W LLPL 283
Exonuc_V_gamma
pfam04257 Exodeoxyribonuclease V, gamma subunit; The Exodeoxyribonuclease V enzyme is a multi-subunit ...
2-342
2.99e-134
Exodeoxyribonuclease V, gamma subunit; The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyzes ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of ssDNA or dsDNA and unwinding of dsDNA. This subunit recognizes and binds DNA forks containing Chi sequences in a sequence specific manner while Chi interactions with the phosphodiester backbone (mainly arginine side chains) stabilize the twisted conformation of the DNA. These interactions induce conformational changes that switch RecBCD from bacteriophage destruction and CRISPR spacer acquisition, to constructive host DNA repair.
Pssm-ID: 461240 [Multi-domain]
Cd Length: 308
Bit Score: 409.40
E-value: 2.99e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 2 L RV Y H SNRL D VL EA L MEFIV e R ER L D DPFEPE M ILVQS T GMA Q WL QMT L SQ KFGIAANI D FP L PASF I W DM F VR VL PEI P 81
Cdd:pfam04257 1 L TI Y Q SNRL E VL AE L LAALL - R RP L A DPFEPE I ILVQS K GMA R WL TLE L AE KFGIAANI E FP F PASF L W KL F RA VL GKL P 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 82 K ES A F N K QSMS W K LM T LLP Q LLE RED F TL LRHYL T DD S D KR KLFQL SSKA ADLFDQYL V YRPDWLA Q WE T G HLV E G L GEA 161
Cdd:pfam04257 80 E ES P F A K EVLT W R LM R LLP E LLE QPE F AP LRHYL A DD G D QL KLFQL AERI ADLFDQYL L YRPDWLA A WE A G KSP E A L PAD 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 162 Q AWQA P LW K ALV EYTHQL gqprw HRA N LY QR F IET L ES - ATTC P PG LP S R V F IC GIS A LPP V YL QA LQAL GK HI EI HL LF 240
Cdd:pfam04257 160 E AWQA I LW R ALV AEIKLR ----- HRA R LY ED F LQA L QK e GDKA P KD LP K R L F VF GIS S LPP L YL DI LQAL AR HI DV HL FL 234
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 241 T NPCR Y YWGDI K D PAY L AK L LT R Q R RHSF E drelplfrdsenagqlfnsdgeqd V GNPLLASWGK L GRD YIY LL SD LE S s 320
Cdd:pfam04257 235 L NPCR E YWGDI V D RRE L LR L AE R E R QRRG E ------------------------ E GNPLLASWGK Q GRD FFD LL EE LE E - 289
330 340
....*....|....*....|..
gi 985001655 321 qel D A FV DVTP D N LL HNI Q S DI 342
Cdd:pfam04257 290 --- D L FV EPEG D S LL SQL Q N DI 308
Name
Accession
Description
Interval
E-value
recC
PRK11069 exodeoxyribonuclease V subunit gamma;
1-1122
0e+00
exodeoxyribonuclease V subunit gamma;
Pssm-ID: 236835 [Multi-domain]
Cd Length: 1122
Bit Score: 2324.54
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 1 M LR VYHSN R LDVL E ALM E F IV ERE R LDDPFEPEMILVQS T GMAQWLQM T L S QKFGIAANIDFPLPA S FIWDMF V RVLP E I 80
Cdd:PRK11069 1 M FT VYHSN Q LDVL K ALM V F LI ERE P LDDPFEPEMILVQS P GMAQWLQM E L A QKFGIAANIDFPLPA T FIWDMF T RVLP D I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 81 PKESAFNK QS M S WKLMTLLPQLLER ED FT L LRHYLTDD S DKRKLFQL SSKA ADLFDQYLVYRP D WLA Q WE T G H LVEGLG E 160
Cdd:PRK11069 81 PKESAFNK EA M T WKLMTLLPQLLER PE FT P LRHYLTDD E DKRKLFQL AARI ADLFDQYLVYRP E WLA S WE A G Q LVEGLG D 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 161 AQ A WQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLP S RVFICGISALPPVYLQALQALGKHI E IHLLF 240
Cdd:PRK11069 161 AQ P WQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLP K RVFICGISALPPVYLQALQALGKHI D IHLLF 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 241 TNPCRYYWGDI K DPA Y LAKLL T RQRRHSFEDRELPLFRDSENA G QLFNSDGEQDVGNPLLASWGKLGRD YI YLLS D LESS 320
Cdd:PRK11069 241 TNPCRYYWGDI Q DPA F LAKLL A RQRRHSFEDRELPLFRDSENA E QLFNSDGEQDVGNPLLASWGKLGRD NL YLLS Q LESS 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 321 QELDAFVD VT PDNLLHNIQ S DILELE NR AV A GVN I EEFSRSD N KRPLDP L D S S IT FHVCHSPQREVEVLHDRLLAMLE E D 400
Cdd:PRK11069 321 QELDAFVD IE PDNLLHNIQ A DILELE DH AV I GVN D EEFSRSD H KRPLDP D D R S LS FHVCHSPQREVEVLHDRLLAMLE A D 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 401 PTLTPRDIIVMVADIDSYSPFIQAVFG S APA D RYLP Y AISDRRARQ S HPVL E AFISLLSLPDSRF VS EDVLALL D VP V LA 480
Cdd:PRK11069 401 PTLTPRDIIVMVADIDSYSPFIQAVFG N APA E RYLP F AISDRRARQ A HPVL Q AFISLLSLPDSRF TA EDVLALL E VP A LA 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 481 ARF D ITEEGLRYLRQWV N ESGIRWG I DDDNVRELELPATGQHTWRFGLTRMLLGYAMESA Q GEWQ S VLPYDESSGLIAEL 560
Cdd:PRK11069 481 ARF A ITEEGLRYLRQWV E ESGIRWG L DDDNVRELELPATGQHTWRFGLTRMLLGYAMESA A GEWQ G VLPYDESSGLIAEL 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 561 V GHLASLLMQLNIWRRGLAQ E RPLEEWLPVCR DM L NA FFLPDAETEAA MT LIEQQWQAII A EGL G AQYGDAVPLSLLRDE 640
Cdd:PRK11069 561 A GHLASLLMQLNIWRRGLAQ P RPLEEWLPVCR QL L DD FFLPDAETEAA LA LIEQQWQAII E EGL D AQYGDAVPLSLLRDE 640
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 641 LAQRLDQERISQRFLAGPVN I CTLMPMRSIPFKVVCLLGMNDGVYPR Q L A PLGFDLMSQKPKRGDRSRRDDDRYLFLEAL 720
Cdd:PRK11069 641 LAQRLDQERISQRFLAGPVN F CTLMPMRSIPFKVVCLLGMNDGVYPR T L P PLGFDLMSQKPKRGDRSRRDDDRYLFLEAL 720
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 721 I SAQQ K LYISYIGRSIQDNSERFPSVLV Q EL ID YIGQS HY LPGDEALNCDES E ARVKAHLTCLHTRMPFDPQN Y QPGE R Q 800
Cdd:PRK11069 721 L SAQQ Q LYISYIGRSIQDNSERFPSVLV S EL LE YIGQS YC LPGDEALNCDES A ARVKAHLTCLHTRMPFDPQN F QPGE Q Q 800
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 801 SYAREWLPAASQ A GKAH SE FVQPLPF TL PE TVP L ET LQRFW A HPVRAFFQ M RL Q VNFRTE D SE I PD T EPF I L E GLSRYQ I 880
Cdd:PRK11069 801 SYAREWLPAASQ Q GKAH PD FVQPLPF EP PE ELT L DE LQRFW R HPVRAFFQ R RL K VNFRTE E SE L PD E EPF T L D GLSRYQ L 880
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 881 NQQLLNAL V EQDDAERLFRR F RAAG D LPYGAFGEIFWETQCQEMQQLADRV I ACRQPGQS M EIDL AC NGVQ I TGWLPQVQ 960
Cdd:PRK11069 881 NQQLLNAL I EQDDAERLFRR Q RAAG K LPYGAFGEIFWETQCQEMQQLADRV R ACRQPGQS L EIDL TL NGVQ L TGWLPQVQ 960
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 961 PDGLLRWRP S LLSVA Q G M QLWLEHLVYCASGGNGESRLF L RK D GEWRFPPLAAEQA LH YLSQLIEGYREGMSAPLL V LP E 1040
Cdd:PRK11069 961 PDGLLRWRP G LLSVA D G L QLWLEHLVYCASGGNGESRLF G RK E GEWRFPPLAAEQA KQ YLSQLIEGYREGMSAPLL L LP K 1040
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 1041 SGGAWLK T CYD AQ NDA M LDD DS T L QKAR T K F LQA Y EGNMMVRGEGDDI WY QRLWRQL TP ET M EAI V EQ S QR F LLPLFRFN 1120
Cdd:PRK11069 1041 SGGAWLK A CYD RE NDA I LDD EE T Q QKAR K K L LQA W EGNMMVRGEGDDI YI QRLWRQL DD ET L EAI I EQ A QR Y LLPLFRFN 1120
..
gi 985001655 1121 QS 1122
Cdd:PRK11069 1121 QS 1122
RecC
COG1330 Scaffold subunit RecC of the DNA repair enzyme RecBCD (exonuclease V) [Replication, ...
1-1122
0e+00
Scaffold subunit RecC of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440941 [Multi-domain]
Cd Length: 1087
Bit Score: 1582.93
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 1 ML RV YHSNRL D VL EA L MEFIVERER L D DPF E PE M ILVQS T GMA Q WLQ MT L SQK FGIAANI D FPLPASFIW DM F VR VLP EI 80
Cdd:COG1330 1 ML HL YHSNRL E VL AD L LAALLAAQP L A DPF A PE V ILVQS P GMA R WLQ LE L AER FGIAANI E FPLPASFIW QL F RA VLP DV 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 81 P K ES A F N K QSMS W K LM T LLP Q LL ERED F TL L RH YL T DD S D K RK LF QL SSKA ADLFDQYLVYRPDWLA Q WE T G HL V E - G L G 159
Cdd:COG1330 81 P E ES P F S K EALT W R LM R LLP E LL DEPE F AP L AR YL G DD E D Q RK RY QL AGRL ADLFDQYLVYRPDWLA A WE A G ED V D g P L P 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 160 EA QAWQA P LW K ALV EY T HQ L g Q PR WHRANLYQRFI ET L E S ATTC P P GLP S RVF IC GISALPPVYL QA LQAL GK HI EI HL L 239
Cdd:COG1330 161 DD QAWQA A LW R ALV AE T GA L - Q SA WHRANLYQRFI AA L R S GEPR P A GLP E RVF VF GISALPPVYL EV LQAL AR HI DV HL F 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 240 FT NPCR Y YWGDI K D PAY LA K L LT R Q rrhsfedrelplfrdsenagqlf NS D GEQD VGNPLLASWGK L GRD YIY LL SD LE - 318
Cdd:COG1330 240 LL NPCR E YWGDI V D ARE LA R L AA R S ----------------------- DD D DLLE VGNPLLASWGK Q GRD FLD LL AE LE d 296
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 319 S SQE L DAFVD VT PD N LLH NI Q S DILEL ENR A VAG vnieefsrsd N KRPL D P L D S S ITF H V CHSP Q REVEVLHD R LLA MLE 398
Cdd:COG1330 297 E SQE I DAFVD PP PD T LLH QL Q A DILEL RPP A EGA ---------- S KRPL A P D D R S LQV H A CHSP L REVEVLHD Q LLA LFA 366
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 399 E DPTLTPRDI I VMV A DI DS Y S P F IQAVFG S AP A D - R YL P YA I S DR R ARQ SH P V L E AF IS LL S LP D SRF VSED VL A LL D VP 477
Cdd:COG1330 367 D DPTLTPRDI L VMV P DI EA Y A P Y IQAVFG Q AP P D p R RI P FS I A DR S ARQ EN P L L A AF LQ LL D LP Q SRF TASE VL D LL E VP 446
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 478 VL A A RF DIT E EG L RY LR Q WV N E S GIRWG I D DDNVRE L E LPAT G Q H TWRFGL T R M LLGYAM ESAQ G E WQ SV LPYDE SS GL I 557
Cdd:COG1330 447 AV A R RF GLD E DD L ER LR R WV A E A GIRWG L D AAHRAR L G LPAT E Q N TWRFGL D R L LLGYAM GEEA G L WQ GI LPYDE VE GL D 526
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 558 AEL V G H LA SL L MQ L NI WR RG LA QE R P L E EWL PVC R DM L NA FF L PD A E T E A A MTLIEQQWQAIIAEGLG A Q Y GDAV PL SLL 637
Cdd:COG1330 527 AEL L G R LA EF L DR L AA WR QR LA EP R T L A EWL ERL R AL L DD FF A PD E E D E W A LAQLRRALAELAEQAAE A G Y DEPL PL AVV 606
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 638 RD E LA Q RLD QERIS QRFLAG P V NI CTLMPMRSIPF K VVCLLGMNDG VY PRQ LA PLGFDLM SQK P K RGDRSRRDDDRYLFL 717
Cdd:COG1330 607 RD A LA A RLD GRPTR QRFLAG G V TF CTLMPMRSIPF R VVCLLGMNDG DF PRQ QP PLGFDLM ARH P R RGDRSRRDDDRYLFL 686
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 718 EAL I SA QQK LYISY I GRSI Q DNSER F PSVLV Q EL I DY IG Q SHY LPGD ealncde S EA R VK AHL TCL H TRM PF D P QNYQ PG 797
Cdd:COG1330 687 EAL L SA RER LYISY V GRSI R DNSER P PSVLV S EL L DY LA Q GFA LPGD ------- S GE R LR AHL VVR H PLQ PF S P RYFE PG 759
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 798 -- ERQ SY AR EWL P AA SQA G KAHSE ---- FV QPLP FTL P - E T V P L ET L Q RF WA HPVRAF FQM RL Q V NFRT E DS E IP D T EPF 870
Cdd:COG1330 760 sp RLF SY DA EWL A AA RAL G QPRAP appf LA QPLP PPE P e E E V T L DD L L RF LR HPVRAF LRQ RL G V RLPE E EE E LE D A EPF 839
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 871 I L E GL S RYQ IN Q Q LL N AL VEQ DD AER LF R R F RA A G D LP Y GAFGE IFW E TQCQ E MQQ LA DRVIACRQ -- P GQ S MEI DL ACN 948
Cdd:COG1330 840 E L D GL E RYQ LR Q R LL E AL LAG DD PAE LF A R L RA R G L LP P GAFGE LLL E RLLE E VAA LA AALRPLLA gp P LE S LDV DL DLG 919
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 949 GV QI TGWL PQ V QP DGL L RWRP SL L SVAQGMQ LWLEHL VY CA S G GN G - ES R L FL R k DG E WR FP PL AA E Q A LHY L SQ L IEG Y 1027
Cdd:COG1330 920 GV RL TGWL DG V RG DGL V RWRP GK L KAKDLLR LWLEHL AL CA A G PP G g ES V L VG R - DG V WR LA PL PP E E A RAL L AE L LAL Y 998
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 1028 R E G MSA PL LVL P ESGG AW LKT CYD AQ ndamlddds T LQ KA RTKFL QA Y EG NMM V R GEGDD IWY QR LW R Q L T P - E TM E AIV 1106
Cdd:COG1330 999 R Q G LRQ PL PLF P KTAW AW AEA CYD GK --------- T QE KA LEAAR QA W EG GDF V P GEGDD PYL QR VF R G L D P l E LD E RFA 1069
1130
....*....|....*.
gi 985001655 1107 EQSQ R F LLPL FRFNQS 1122
Cdd:COG1330 1070 ALAE R L LLPL LAHLEA 1085
recC
TIGR01450 exodeoxyribonuclease V, gamma subunit; This model describes the gamma subunit of ...
2-1088
0e+00
exodeoxyribonuclease V, gamma subunit; This model describes the gamma subunit of exodeoxyribonuclease V. Species containing this protein should also have the alpha (TIGR01447) and beta (TIGR00609) subunits. Candidates from Borrelia and from the Chlamydias differ dramatically and score between trusted and noise cutoffs. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273633 [Multi-domain]
Cd Length: 1060
Bit Score: 1525.05
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 2 L R V YHSNRLDVL E AL MEFIVERER LDDPFEPE M ILVQS T GMAQWLQMTL SQKF G I AAN ID FPLPASFIW D MFV R VLPEIP 81
Cdd:TIGR01450 1 F R L YHSNRLDVL A AL LAALLRDPP LDDPFEPE L ILVQS P GMAQWLQMTL AEDL G V AAN LE FPLPASFIW Q MFV A VLPEIP 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 82 K ESAFNK QS MSW K LM T LLP Q LLER ED F TL LRHYL T DDSD K RK LF QL SSKA ADLFDQYLVYRPDWLA Q WE T G HL VEG L G EA 161
Cdd:TIGR01450 81 E ESAFNK EV MSW R LM A LLP A LLER PE F RT LRHYL A DDSD L RK RY QL AERL ADLFDQYLVYRPDWLA A WE A G DD VEG P G DL 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 162 QAWQA P LW K ALV EYTHQL GQP R w HRANL Y QRFIE T L E S A TT C PPGLP S R V FI C GISALPP V YLQAL Q AL GK H IEI HL LF T 241
Cdd:TIGR01450 161 QAWQA I LW R ALV AGVGAD GQP T - HRANL H QRFIE R L R S G TT H PPGLP A R L FI F GISALPP T YLQAL A AL AQ H CDV HL FL T 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 242 NPCR Y YWGDI K D PA YLA K LLTR Q R rhs FE D RE LPL FR D S E nagqlfnsdg E QDV G N PLLASWGKLGRD Y IYLL SD LE S SQ 321
Cdd:TIGR01450 240 NPCR E YWGDI I D FK YLA R LLTR H R --- GA D PL LPL RQ D L E ---------- E HAA G H PLLASWGKLGRD F IYLL PE LE Q SQ 306
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 322 E L DAF VDV TPD N LLH NI Q S DIL E LE N R A V agvnieefsrs D N K R P LD PLD S SI T FH V CHSP Q REVEVLHDRLLA M LEEDP 401
Cdd:TIGR01450 307 E I DAF LEA TPD T LLH QL Q A DIL H LE P R P V ----------- D A K L P SA PLD R SI Q FH A CHSP L REVEVLHDRLLA L LEEDP 375
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 402 TL T PRDIIVMV A DIDSY S P F I Q AVFG S AP A D - R Y LPY AI SDRR A RQ SH P V LEAFI S LL S LP D SRF VSEDV LALLD V P VLA 480
Cdd:TIGR01450 376 TL Q PRDIIVMV P DIDSY A P Y I E AVFG Q AP V D a R F LPY SL SDRR L RQ RE P L LEAFI H LL D LP E SRF TASEI LALLD I P PVR 455
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 481 ARF D I T E EG L RY LR Q WV N E S GIRWG I D DDNV REL E LPAT G QH - TWRFGL T RMLLGYAM ESAQ G E WQ S VLPYD ESS GL I AE 559
Cdd:TIGR01450 456 ARF G I D E DD L ET LR R WV A E A GIRWG L D AEHR REL G LPAT D QH n TWRFGL E RMLLGYAM GEDA G I WQ G VLPYD DVG GL Q AE 535
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 560 L V G H LA SL L MQ L NI WRRGLAQ E RPLE E WL PVC RD M L N A F F LP D AE TE A A M T LI E QQ W QAII AE GL GAQ YGDAV PL SLL RD 639
Cdd:TIGR01450 536 L A G R LA EF L ER L SH WRRGLAQ P RPLE Q WL ERL RD L L D A L F AV D DT TE L A L T QL E RE W VDWQ AE AA GAQ FAQPL PL EVV RD 615
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 640 E LA QR LD Q E RI S Q RFLAG P VN I CTL M PMRSIPF K VVCLLGMNDG V YPRQ LA P L GFDLM SQK P KR GDRSRRDDDRYLFLEA 719
Cdd:TIGR01450 616 H LA AL LD D E PT S A RFLAG G VN F CTL V PMRSIPF R VVCLLGMNDG D YPRQ QH P A GFDLM ARE P RK GDRSRRDDDRYLFLEA 695
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 720 L I SAQ QK LYISY I GRSI Q DNSER F PSVL VQ ELIDY IG Q S HYL P GD ealncdes E AR VK A H LT CL H TRM PF D PQN Y QPG E R 799
Cdd:TIGR01450 696 L L SAQ EQ LYISY V GRSI R DNSER P PSVL LG ELIDY LV Q T HYL D GD -------- S AR LA A R LT EQ H PLQ PF S PQN F QPG G R 767
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 800 Q --- SYAREWL P AA SQ A GKAHSE F V QPLP --- FTL P ETV PL ET L Q RFWAHPV R AFFQ M RL Q V N F RT E DSE I P D T EPF I L E 873
Cdd:TIGR01450 768 L kpf SYAREWL A AA QA A EGKRPD F D QPLP grp AEP P AEL PL AD L I RFWAHPV K AFFQ Q RL G V S F PW E VET I E D S EPF E L D 847
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 874 GLSRYQIN Q QLL NAL v E QDD A ER ---- L FR R F RA A G D LP Y GAFG E IF WET Q C Q EMQ QLA DR V - IACR QP G QS M EIDL ACN 948
Cdd:TIGR01450 848 GLSRYQIN E QLL RFA - L QDD E ER dlaq L AA R L RA R G L LP S GAFG R IF AKE Q Q Q RAR QLA TA V l AHRK QP P QS V EIDL DLQ 926
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 949 - G VQIT GWL P Q VQ PDGL L RWR PSL L SVA Q GMQL WLEHL VY CASG GNG ES R LF L RK D G EWR -- F PPL - A AEQAL H YLS Q L I 1024
Cdd:TIGR01450 927 d G IRLS GWL G Q LY PDGL V RWR YGK L NSP Q LLRA WLEHL IL CASG PPV ES V LF C RK V G RLH ia L PPL v P AEQAL A YLS E L V 1006
1050 1060 1070 1080 1090 1100
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 985001655 1025 E G YR E GM SA PL LVL P ESGG AW LKTC YDAQ N damldddstl Q KA RT K FLQ AYEGN MMVR GEGD DI 1088
Cdd:TIGR01450 1007 E L YR Q GM RQ PL PFP P KTAL AW AEAR YDAQ D ---------- E KA LK K ARE AYEGN FFRK GEGD AP 1060
RecC_C-like
cd22353 C-terminal nuclease-like domain of exodeoxyribonuclease V subunit RecC and similar proteins; ...
834-1116
1.01e-148
C-terminal nuclease-like domain of exodeoxyribonuclease V subunit RecC and similar proteins; Exodeoxyribonuclease V subunit beta (RecC) is part of the RecBCD complex that processes DNA ends resulting from a double-strand break. Its C-terminal domain contacts the two separate strands of the DNA substrate and may be responsible for stabilizing RecD interactions with the complex. It belongs to a superfamily of PDDEXK nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.
Pssm-ID: 411757 [Multi-domain]
Cd Length: 283
Bit Score: 446.22
E-value: 1.01e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 834 L ET L Q RFW A HPVR A FFQ M RL Q V N F RT E DS E I PD T EPF I L E GL S RYQ I NQQLLNAL V E QD D AER L FR R F RA A G D LPYGAFG 913
Cdd:cd22353 2 L DE L L RFW R HPVR Y FFQ R RL K V F F EQ E ET E L PD E EPF S L D GL E RYQ L NQQLLNAL I E GK D IDQ L YQ R Y RA S G K LPYGAFG 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 914 E IF WE T Q CQ EMQ Q LA DRVIAC R QPGQSM EI D L AC NG VQI TGWL P QVQ P DGLLRWRP SL L SVAQ G MQ LWLEHL V YCA S GG N 993
Cdd:cd22353 82 E LY WE K Q LK EMQ E LA EKIRPL R TELKDL EI N L KI NG IRL TGWL K QVQ Q DGLLRWRP GK L NAKD G LS LWLEHL I YCA L GG K 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 994 GESRL FL R KDGE WRFPPL A A E QA LH YL SQ LIEGY RE GM SA PLL V LP E SGGAWL KT CYD AQ N D a MLD D DS T LQ KAR T K F LQ 1073
Cdd:cd22353 162 GESRL IG R NNSI WRFPPL S A D QA KK YL EK LIEGY LQ GM NQ PLL L LP K SGGAWL EA CYD KK N Q - IKW D EN T QE KAR K K L LQ 240
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 985001655 1074 A YE GN MMVR GEGDD IWY QRL WR QL TP E TM E A I VEQSQ R F LLPL 1116
Cdd:cd22353 241 A WN GN YYIS GEGDD PYI QRL IP QL NE E LI E Q I IKLAE R W LLPL 283
Exonuc_V_gamma
pfam04257 Exodeoxyribonuclease V, gamma subunit; The Exodeoxyribonuclease V enzyme is a multi-subunit ...
2-342
2.99e-134
Exodeoxyribonuclease V, gamma subunit; The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyzes ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of ssDNA or dsDNA and unwinding of dsDNA. This subunit recognizes and binds DNA forks containing Chi sequences in a sequence specific manner while Chi interactions with the phosphodiester backbone (mainly arginine side chains) stabilize the twisted conformation of the DNA. These interactions induce conformational changes that switch RecBCD from bacteriophage destruction and CRISPR spacer acquisition, to constructive host DNA repair.
Pssm-ID: 461240 [Multi-domain]
Cd Length: 308
Bit Score: 409.40
E-value: 2.99e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 2 L RV Y H SNRL D VL EA L MEFIV e R ER L D DPFEPE M ILVQS T GMA Q WL QMT L SQ KFGIAANI D FP L PASF I W DM F VR VL PEI P 81
Cdd:pfam04257 1 L TI Y Q SNRL E VL AE L LAALL - R RP L A DPFEPE I ILVQS K GMA R WL TLE L AE KFGIAANI E FP F PASF L W KL F RA VL GKL P 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 82 K ES A F N K QSMS W K LM T LLP Q LLE RED F TL LRHYL T DD S D KR KLFQL SSKA ADLFDQYL V YRPDWLA Q WE T G HLV E G L GEA 161
Cdd:pfam04257 80 E ES P F A K EVLT W R LM R LLP E LLE QPE F AP LRHYL A DD G D QL KLFQL AERI ADLFDQYL L YRPDWLA A WE A G KSP E A L PAD 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 162 Q AWQA P LW K ALV EYTHQL gqprw HRA N LY QR F IET L ES - ATTC P PG LP S R V F IC GIS A LPP V YL QA LQAL GK HI EI HL LF 240
Cdd:pfam04257 160 E AWQA I LW R ALV AEIKLR ----- HRA R LY ED F LQA L QK e GDKA P KD LP K R L F VF GIS S LPP L YL DI LQAL AR HI DV HL FL 234
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 241 T NPCR Y YWGDI K D PAY L AK L LT R Q R RHSF E drelplfrdsenagqlfnsdgeqd V GNPLLASWGK L GRD YIY LL SD LE S s 320
Cdd:pfam04257 235 L NPCR E YWGDI V D RRE L LR L AE R E R QRRG E ------------------------ E GNPLLASWGK Q GRD FFD LL EE LE E - 289
330 340
....*....|....*....|..
gi 985001655 321 qel D A FV DVTP D N LL HNI Q S DI 342
Cdd:pfam04257 290 --- D L FV EPEG D S LL SQL Q N DI 308
RecC_C
pfam17946 RecC C-terminal domain; This entry corresponds to the C-terminal domain of the RecC protein. ...
829-1050
2.70e-72
RecC C-terminal domain; This entry corresponds to the C-terminal domain of the RecC protein. This domain has a PD(D/E)XK like fold. Deleting this domain eliminates RecD assembly within the RecBCD complex.
Pssm-ID: 436165 [Multi-domain]
Cd Length: 223
Bit Score: 239.49
E-value: 2.70e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 829 P ET V P L ET L Q RF WAH P V RAF FQM RL Q V NFRT E DSEIP D T EPF I L E GL S R Y Q INQQ LL N AL VEQD D A E R L FR R F RA A G D LP 908
Cdd:pfam17946 1 P AE V T L DD L I RF LRN P A RAF LRQ RL G V RLPE E EEALE D A EPF A L D GL E R W Q LGDR LL E AL LAGA D L E A L LA R L RA R G L LP 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 909 Y GAFGE IFW E TQCQ E M Q Q LA D R VI A CRQP G -- QSMEI DL ACN G VQI TGWL PQVQPD GLLRWR P S L L SVAQGMQL WLEHL V 986
Cdd:pfam17946 81 P GAFGE LLL E ELLA E V Q A LA E R LR A LLGG G pl RPLDV DL DLG G GRL TGWL GGLRRR GLLRWR Y S R L KAKDLLRA WLEHL A 160
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 985001655 987 Y CA S G GN G ESR L f L R KDGEW R FP PL A A EQ A LHY L S QL IEG YR E G MSA PL LVL P ESGG A WLKTCY 1050
Cdd:pfam17946 161 L CA A G PE G TTL L - G R DGSDL R LA PL P A DD A REL L A QL LAL YR Q G LRR PL PFF P KTAW A YAEALA 223
AddB
COG3857 ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
310-933
3.05e-28
ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
Pssm-ID: 443066 [Multi-domain]
Cd Length: 1019
Bit Score: 123.32
E-value: 3.05e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 310 Y I Y L LS D l ESSQE L DAFVDV T PDN LL HNIQSDIL E L E NRAVAG vn IEEFS R SDNKR P LDPLDSS I TFHVCHSPQR EVE VL 389
Cdd:COG3857 215 T I T L TL D - PDELD L FSATGE T YER LL ELAKENGV E V E FKKSPE -- LAHLE R NLFAY P PEEEPEG I EIIEAANRRA EVE AV 291
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 390 HDRLLAMLE E D p TLTP RDI I V M V A D IDS Y S P F I QA VF gsapa DR Y - L PY A I SDR R ARQS HP VL E AFI SLL S L PD S R F VS E 468
Cdd:COG3857 292 AREIRRLVR E E - GYRY RDI A V V V R D LEA Y A P L I ER VF ----- AE Y g I PY F I DEK R PLSH HP LV E LIL SLL E L VR S N F RY E 365
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 469 DV LA LL DVPV L aar FDITE E GLRY L RQW V NES GIR WGIDDDNVR E L E LPA T GQHTWRFGLTRM L LGYAM E SAQ g EWQSV L 548
Cdd:COG3857 366 DV FR LL KTGL L --- RPLSR E EIDR L ENY V LAY GIR GRRWLERYL E E E EEL T DEEEEDLERLNE L RDRLL E PLL - PLRER L 441
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 549 P yde SSGLIA E LVGH L ASL L MQ L NIWRR glaqerp LEEW lpvc R DMLN A FF L PD A ET eaamtl I EQ Q W Q A I I A -- EG L GA 626
Cdd:COG3857 442 K --- KAKTVR E WAEA L YEF L EE L GVPEK ------- LEEW ---- R EAEE A GD L EE A RE ------ H EQ A W N A L I E ll DE L VE 501
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 627 QY GD - AVP L SLLRDE L AQR L DQERISQRFLA - GP V NICT L MPM R SIP FK V V CL LG M N D GV Y P -------------- RQ L A 690
Cdd:COG3857 502 VL GD e KLS L EEFLRI L ESG L EELTFGLIPPS l DQ V QVGG L DRA R GLD FK A V FV LG L N E GV F P arpredgllsdeer ER L N 581
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 691 P LG FD L MSQ kpkrg D R S R RDDD R Y LF LE AL IS A QQK LY I SY i GRSIQDNSERF PS V L VQE L IDYIGQSH - YLPGD E A L NC 769
Cdd:COG3857 582 E LG LE L PPT ----- S R E R LLEE R F LF YR AL TR A SER LY L SY - PLADEEGKALL PS P L IDR L RELFPELE e RSLLE E E L EY 655
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 770 DESEARVKAH L TCLHTRMPFD P qnyqpg ERQSYAREW L PA - A S Q agkahsefvqplpftlpetvplet L QRFW A H P VRA F 848
Cdd:COG3857 656 IGTPESALSE L AAALRQLELA P ------ LWWDVYKWL L KL s V S R ------------------------ L ETYA A C P FQF F 705
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985001655 849 FQMR L QV nfrt EDS E IPDTEPF -------- I LE GLSRYQINQQ L LN A LVEQDDA E R L FRRF -- RA A GD L PY G AFG - EIFW 917
Cdd:COG3857 706 LRYG L KL ---- KER E EYELDAP drgtlfha V LE RFYKELKEEG L DW A DLSDEEL E E L LEEA ve EL A PE L QN G ILL s SARY 781
650
....*....|....*.
gi 985001655 918 ETQCQEMQQ L AD R VIA 933
Cdd:COG3857 782 RYLLERLKR L LK R ARR 797
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
