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Conserved domains on  [gi|985002779|gb|AMC96865|]
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phosphoribosylamine--glycine ligase [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

phosphoribosylamine--glycine ligase( domain architecture ID 11414962)

phosphoribosylamine--glycine ligase catalyzes the second step of the de novo purine biosynthetic pathway; the conversion of phosphoribosylamine, glycine, and ATP to glycinamide ribonucleotide (GAR), ADP, and Pi

CATH:  3.30.1490.20
PubMed:  2687276

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PurD COG0151
Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]; ...
1-426 0e+00

Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]; Phosphoribosylamine-glycine ligase is part of the Pathway/BioSystem: Purine biosynthesis


:

Pssm-ID: 439921 [Multi-domain]  Cd Length: 422  Bit Score: 816.17  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779   1 MKVLVIGNGGREHALAWKAAQSPLVETVFVAPGNAGTALEPalQNVAIGVTDIPALLDFAQNEKIDLTIVGPEAPLVKGV 80
Cdd:COG0151    1 MKVLVIGSGGREHALAWKLAQSPRVDKLYVAPGNAGTAQLA--ECVDIDVTDIEALVAFAKEENIDLVVVGPEAPLVAGI 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  81 VDTFRAAGLKIFGPTAGAAQLEGSKAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMT 160
Cdd:COG0151   79 VDAFRAAGIPVFGPSKAAAQLEGSKAFAKEFMARYGIPTAAYRVFTDLEEALAYLEEQGAPIVVKADGLAAGKGVVVAET 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 161 LEEAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVT 240
Cdd:COG0151  159 LEEALAAVDDMLADGKFGDAGARVVIEEFLEGEEASLFALTDGKTVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVVT 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 241 DDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDKQGnPKVIEFNCRFGDPETQPIMLRMKSDLVELCLAACESKLD 320
Cdd:COG0151  239 EELLEKIMEEIIEPTVAGMAAEGIPYRGVLYAGLMITADG-PKVLEFNVRFGDPETQVVLPRLESDLLELLLAAAEGRLD 317
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 321 EKTSEWDERASLGVVMAAGGYPGDYRTGDVIHGLPLEEVAGGKVFHAGTKLADDeQVVTNGGRVLCVTALGHTVAEAQKR 400
Cdd:COG0151  318 EVELEWDDRAAVCVVLASGGYPGSYEKGDVITGLEEAEAEGVKVFHAGTALEDG-KLVTNGGRVLGVTALGDTLEEARER 396
                        410       420
                 ....*....|....*....|....*.
gi 985002779 401 AYALMTDIHWDDCFCRKDIGWRAIER 426
Cdd:COG0151  397 AYEAVEKIRFEGMFYRRDIGWRALKR 422
 
Name Accession Description Interval E-value
PurD COG0151
Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]; ...
1-426 0e+00

Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]; Phosphoribosylamine-glycine ligase is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 439921 [Multi-domain]  Cd Length: 422  Bit Score: 816.17  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779   1 MKVLVIGNGGREHALAWKAAQSPLVETVFVAPGNAGTALEPalQNVAIGVTDIPALLDFAQNEKIDLTIVGPEAPLVKGV 80
Cdd:COG0151    1 MKVLVIGSGGREHALAWKLAQSPRVDKLYVAPGNAGTAQLA--ECVDIDVTDIEALVAFAKEENIDLVVVGPEAPLVAGI 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  81 VDTFRAAGLKIFGPTAGAAQLEGSKAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMT 160
Cdd:COG0151   79 VDAFRAAGIPVFGPSKAAAQLEGSKAFAKEFMARYGIPTAAYRVFTDLEEALAYLEEQGAPIVVKADGLAAGKGVVVAET 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 161 LEEAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVT 240
Cdd:COG0151  159 LEEALAAVDDMLADGKFGDAGARVVIEEFLEGEEASLFALTDGKTVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVVT 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 241 DDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDKQGnPKVIEFNCRFGDPETQPIMLRMKSDLVELCLAACESKLD 320
Cdd:COG0151  239 EELLEKIMEEIIEPTVAGMAAEGIPYRGVLYAGLMITADG-PKVLEFNVRFGDPETQVVLPRLESDLLELLLAAAEGRLD 317
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 321 EKTSEWDERASLGVVMAAGGYPGDYRTGDVIHGLPLEEVAGGKVFHAGTKLADDeQVVTNGGRVLCVTALGHTVAEAQKR 400
Cdd:COG0151  318 EVELEWDDRAAVCVVLASGGYPGSYEKGDVITGLEEAEAEGVKVFHAGTALEDG-KLVTNGGRVLGVTALGDTLEEARER 396
                        410       420
                 ....*....|....*....|....*.
gi 985002779 401 AYALMTDIHWDDCFCRKDIGWRAIER 426
Cdd:COG0151  397 AYEAVEKIRFEGMFYRRDIGWRALKR 422
purD TIGR00877
phosphoribosylamine--glycine ligase; Alternate name: glycinamide ribonucleotide synthetase ...
1-425 0e+00

phosphoribosylamine--glycine ligase; Alternate name: glycinamide ribonucleotide synthetase (GARS). This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 273315 [Multi-domain]  Cd Length: 422  Bit Score: 701.37  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779    1 MKVLVIGNGGREHALAWKAAQSPLVETVFVAPGNAGTALEPALQNVAIGVTDIPALLDFAQNEKIDLTIVGPEAPLVKGV 80
Cdd:TIGR00877   1 MKVLVIGNGGREHALAWKLAQSPLVKYVYVAPGNAGTARLAKNKNVAIEITDIEALVEFAKKKKIDLAIIGPEAPLVLGL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779   81 VDTFRAAGLKIFGPTAGAAQLEGSKAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMT 160
Cdd:TIGR00877  81 VDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFTDPEEAKSYIQEKGAPIVVKADGLAAGKGVIVAKT 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  161 LEEAEAAVHDMLAGNaFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVT 240
Cdd:TIGR00877 161 NEEAIKAVEDILEQK-FGDAGERVVIEEFLDGEEFSLLAFVDGKTVIPMPPAQDHKRALEGDKGPNTGGMGAYSPAPVFT 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  241 DDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDKQGnPKVIEFNCRFGDPETQPIMLRMKSDLVELCLAACESKLD 320
Cdd:TIGR00877 240 EEVERRIAEEIVEPTVKAMRKEGTPYKGVLYAGLMLTKEG-PKVLEFNCRFGDPETQAVLPLLKSDLLEVCLAAVEGKLD 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  321 EKTSEWDERASLGVVMAAGGYPGDYRTGDVIHGLPLEEVAGGKVFHAGTKlADDEQVVTNGGRVLCVTALGHTVAEAQKR 400
Cdd:TIGR00877 319 EVELRFDNRAAVTVVLASEGYPEDYRKGDPITGEPLAEAEGVKVFHAGTK-ADNGKLVTNGGRVLAVTALGKTLEEARER 397
                         410       420
                  ....*....|....*....|....*
gi 985002779  401 AYALMTDIHWDDCFCRKDIGWRAIE 425
Cdd:TIGR00877 398 AYEAVEYIKFEGMFYRKDIGFRALE 422
PLN02257 PLN02257
phosphoribosylamine--glycine ligase
4-428 0e+00

phosphoribosylamine--glycine ligase


Pssm-ID: 177899 [Multi-domain]  Cd Length: 434  Bit Score: 587.48  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779   4 LVIGNGGREHALAWKAAQSPLVETVFVAPGNAGTALEPALQNVA-IGVTDIPALLDFAQNEKIDLTIVGPEAPLVKGVVD 82
Cdd:PLN02257   1 LVIGGGGREHALCYALQRSPSCDAVFCAPGNAGIATSGDATCVPdLDISDSAAVISFCRKWGVGLVVVGPEAPLVAGLAD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  83 TFRAAGLKIFGPTAGAAQLEGSKAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLE 162
Cdd:PLN02257  81 DLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFTDPAAAKKYIKEQGAPIVVKADGLAAGKGVVVAMTLE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 163 EAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVTDD 242
Cdd:PLN02257 161 EAYEAVDSMLVKGAFGSAGSEVVVEEFLDGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTPE 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 243 VHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDKQ-GNPKVIEFNCRFGDPETQPIMLRMKSDLVELCLAACESKLDE 321
Cdd:PLN02257 241 LESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKsGLPKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACKGELSG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 322 KTSEWDERASLGVVMAAGGYPGDYRTGDVIHGLPLEEVA--GGKVFHAGTKLADDEQVVTNGGRVLCVTALGHTVAEAQK 399
Cdd:PLN02257 321 VSLTWSPDSAMVVVMASNGYPGSYKKGTVIKNLDEAEAVapGVKVFHAGTALDSDGNVVAAGGRVLGVTAKGKDIAEARA 400
                        410       420
                 ....*....|....*....|....*....
gi 985002779 400 RAYALMTDIHWDDCFCRKDIGWRAIEREQ 428
Cdd:PLN02257 401 RAYDAVDQIDWPGGFFRRDIGWRAVARLQ 429
GARS_A pfam01071
Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide ...
103-296 3.95e-109

Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase catalyzes the second step in the de novo biosynthesis of purine. The reaction catalyzed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam02786).


Pssm-ID: 395851 [Multi-domain]  Cd Length: 194  Bit Score: 319.61  E-value: 3.95e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  103 GSKAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKGAPI-VIKADGLAAGKGVIVAMTLEEAEAAVHDMLAGNAFGDAG 181
Cdd:pfam01071   1 ASKSFAKDFMKRYGIPTAEYETFTDPEEAKSYIQEAGFPAiVVKADGLAAGKGVIVASSNEEAIKAVDEILEQKKFGEAG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  182 HRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVTDDVHQRTMERIIWPTVKGMAA 261
Cdd:pfam01071  81 ETVVIEEFLEGEEVSVLAFVDGKTVKPLPPAQDHKRAGEGDTGPNTGGMGAYSPAPVITPELLERIKETIVEPTVDGLRK 160
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 985002779  262 EGNTYTGFLYAGLMIDKQGnPKVIEFNCRFGDPET 296
Cdd:pfam01071 161 EGIPFKGVLYAGLMLTKDG-PKVLEFNCRFGDPET 194
 
Name Accession Description Interval E-value
PurD COG0151
Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]; ...
1-426 0e+00

Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]; Phosphoribosylamine-glycine ligase is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 439921 [Multi-domain]  Cd Length: 422  Bit Score: 816.17  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779   1 MKVLVIGNGGREHALAWKAAQSPLVETVFVAPGNAGTALEPalQNVAIGVTDIPALLDFAQNEKIDLTIVGPEAPLVKGV 80
Cdd:COG0151    1 MKVLVIGSGGREHALAWKLAQSPRVDKLYVAPGNAGTAQLA--ECVDIDVTDIEALVAFAKEENIDLVVVGPEAPLVAGI 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  81 VDTFRAAGLKIFGPTAGAAQLEGSKAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMT 160
Cdd:COG0151   79 VDAFRAAGIPVFGPSKAAAQLEGSKAFAKEFMARYGIPTAAYRVFTDLEEALAYLEEQGAPIVVKADGLAAGKGVVVAET 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 161 LEEAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVT 240
Cdd:COG0151  159 LEEALAAVDDMLADGKFGDAGARVVIEEFLEGEEASLFALTDGKTVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVVT 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 241 DDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDKQGnPKVIEFNCRFGDPETQPIMLRMKSDLVELCLAACESKLD 320
Cdd:COG0151  239 EELLEKIMEEIIEPTVAGMAAEGIPYRGVLYAGLMITADG-PKVLEFNVRFGDPETQVVLPRLESDLLELLLAAAEGRLD 317
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 321 EKTSEWDERASLGVVMAAGGYPGDYRTGDVIHGLPLEEVAGGKVFHAGTKLADDeQVVTNGGRVLCVTALGHTVAEAQKR 400
Cdd:COG0151  318 EVELEWDDRAAVCVVLASGGYPGSYEKGDVITGLEEAEAEGVKVFHAGTALEDG-KLVTNGGRVLGVTALGDTLEEARER 396
                        410       420
                 ....*....|....*....|....*.
gi 985002779 401 AYALMTDIHWDDCFCRKDIGWRAIER 426
Cdd:COG0151  397 AYEAVEKIRFEGMFYRRDIGWRALKR 422
purD TIGR00877
phosphoribosylamine--glycine ligase; Alternate name: glycinamide ribonucleotide synthetase ...
1-425 0e+00

phosphoribosylamine--glycine ligase; Alternate name: glycinamide ribonucleotide synthetase (GARS). This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 273315 [Multi-domain]  Cd Length: 422  Bit Score: 701.37  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779    1 MKVLVIGNGGREHALAWKAAQSPLVETVFVAPGNAGTALEPALQNVAIGVTDIPALLDFAQNEKIDLTIVGPEAPLVKGV 80
Cdd:TIGR00877   1 MKVLVIGNGGREHALAWKLAQSPLVKYVYVAPGNAGTARLAKNKNVAIEITDIEALVEFAKKKKIDLAIIGPEAPLVLGL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779   81 VDTFRAAGLKIFGPTAGAAQLEGSKAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMT 160
Cdd:TIGR00877  81 VDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFTDPEEAKSYIQEKGAPIVVKADGLAAGKGVIVAKT 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  161 LEEAEAAVHDMLAGNaFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVT 240
Cdd:TIGR00877 161 NEEAIKAVEDILEQK-FGDAGERVVIEEFLDGEEFSLLAFVDGKTVIPMPPAQDHKRALEGDKGPNTGGMGAYSPAPVFT 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  241 DDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDKQGnPKVIEFNCRFGDPETQPIMLRMKSDLVELCLAACESKLD 320
Cdd:TIGR00877 240 EEVERRIAEEIVEPTVKAMRKEGTPYKGVLYAGLMLTKEG-PKVLEFNCRFGDPETQAVLPLLKSDLLEVCLAAVEGKLD 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  321 EKTSEWDERASLGVVMAAGGYPGDYRTGDVIHGLPLEEVAGGKVFHAGTKlADDEQVVTNGGRVLCVTALGHTVAEAQKR 400
Cdd:TIGR00877 319 EVELRFDNRAAVTVVLASEGYPEDYRKGDPITGEPLAEAEGVKVFHAGTK-ADNGKLVTNGGRVLAVTALGKTLEEARER 397
                         410       420
                  ....*....|....*....|....*
gi 985002779  401 AYALMTDIHWDDCFCRKDIGWRAIE 425
Cdd:TIGR00877 398 AYEAVEYIKFEGMFYRKDIGFRALE 422
PLN02257 PLN02257
phosphoribosylamine--glycine ligase
4-428 0e+00

phosphoribosylamine--glycine ligase


Pssm-ID: 177899 [Multi-domain]  Cd Length: 434  Bit Score: 587.48  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779   4 LVIGNGGREHALAWKAAQSPLVETVFVAPGNAGTALEPALQNVA-IGVTDIPALLDFAQNEKIDLTIVGPEAPLVKGVVD 82
Cdd:PLN02257   1 LVIGGGGREHALCYALQRSPSCDAVFCAPGNAGIATSGDATCVPdLDISDSAAVISFCRKWGVGLVVVGPEAPLVAGLAD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  83 TFRAAGLKIFGPTAGAAQLEGSKAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLE 162
Cdd:PLN02257  81 DLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFTDPAAAKKYIKEQGAPIVVKADGLAAGKGVVVAMTLE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 163 EAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVTDD 242
Cdd:PLN02257 161 EAYEAVDSMLVKGAFGSAGSEVVVEEFLDGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTPE 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 243 VHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDKQ-GNPKVIEFNCRFGDPETQPIMLRMKSDLVELCLAACESKLDE 321
Cdd:PLN02257 241 LESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKsGLPKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACKGELSG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 322 KTSEWDERASLGVVMAAGGYPGDYRTGDVIHGLPLEEVA--GGKVFHAGTKLADDEQVVTNGGRVLCVTALGHTVAEAQK 399
Cdd:PLN02257 321 VSLTWSPDSAMVVVMASNGYPGSYKKGTVIKNLDEAEAVapGVKVFHAGTALDSDGNVVAAGGRVLGVTAKGKDIAEARA 400
                        410       420
                 ....*....|....*....|....*....
gi 985002779 400 RAYALMTDIHWDDCFCRKDIGWRAIEREQ 428
Cdd:PLN02257 401 RAYDAVDQIDWPGGFFRRDIGWRAVARLQ 429
GARS_A pfam01071
Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide ...
103-296 3.95e-109

Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase catalyzes the second step in the de novo biosynthesis of purine. The reaction catalyzed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam02786).


Pssm-ID: 395851 [Multi-domain]  Cd Length: 194  Bit Score: 319.61  E-value: 3.95e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  103 GSKAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKGAPI-VIKADGLAAGKGVIVAMTLEEAEAAVHDMLAGNAFGDAG 181
Cdd:pfam01071   1 ASKSFAKDFMKRYGIPTAEYETFTDPEEAKSYIQEAGFPAiVVKADGLAAGKGVIVASSNEEAIKAVDEILEQKKFGEAG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  182 HRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVTDDVHQRTMERIIWPTVKGMAA 261
Cdd:pfam01071  81 ETVVIEEFLEGEEVSVLAFVDGKTVKPLPPAQDHKRAGEGDTGPNTGGMGAYSPAPVITPELLERIKETIVEPTVDGLRK 160
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 985002779  262 EGNTYTGFLYAGLMIDKQGnPKVIEFNCRFGDPET 296
Cdd:pfam01071 161 EGIPFKGVLYAGLMLTKDG-PKVLEFNCRFGDPET 194
GARS_N pfam02844
Phosphoribosylglycinamide synthetase, N domain; Phosphoribosylglycinamide synthetase catalyzes ...
1-102 3.91e-56

Phosphoribosylglycinamide synthetase, N domain; Phosphoribosylglycinamide synthetase catalyzes the second step in the de novo biosynthesis of purine. The reaction catalyzed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam00289). This domain is structurally related to the PreATP-grasp domain.


Pssm-ID: 460723 [Multi-domain]  Cd Length: 102  Bit Score: 180.24  E-value: 3.91e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779    1 MKVLVIGNGGREHALAWKAAQSPLVETVFVAPGNAGTALEPalQNVAIGVTDIPALLDFAQNEKIDLTIVGPEAPLVKGV 80
Cdd:pfam02844   1 MKVLVIGSGGREHALAWKLAQSPLVEKLYVAPGNGGTAQLA--ECVDIDATDFEALVAFAKENNIDLVVVGPEAPLVAGI 78
                          90       100
                  ....*....|....*....|....
gi 985002779   81 VDTF--RAAGLKIFGPTAGAAQLE 102
Cdd:pfam02844  79 VDALreRAAGIPVFGPSKAAAQLE 102
GARS_C pfam02843
Phosphoribosylglycinamide synthetase, C domain; Phosphoribosylglycinamide synthetase catalyzes ...
331-422 3.97e-43

Phosphoribosylglycinamide synthetase, C domain; Phosphoribosylglycinamide synthetase catalyzes the second step in the de novo biosynthesis of purine. The reaction catalyzed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam02787).


Pssm-ID: 460722 [Multi-domain]  Cd Length: 88  Bit Score: 146.05  E-value: 3.97e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  331 SLGVVMAAGGYPGDYRTGDVIHGLpleEVAGGKVFHAGTKLaDDEQVVTNGGRVLCVTALGHTVAEAQKRAYALMTDIHW 410
Cdd:pfam02843   1 AVCVVLASGGYPGSYEKGDVITGL---DEAGVKVFHAGTKL-KDGKLVTSGGRVLAVTALGDTLEEAREKAYEAVEKIDF 76
                          90
                  ....*....|..
gi 985002779  411 DDCFCRKDIGWR 422
Cdd:pfam02843  77 EGMFYRKDIGTR 88
AccC COG0439
Biotin carboxylase [Lipid transport and metabolism]; Biotin carboxylase is part of the Pathway ...
86-292 3.70e-21

Biotin carboxylase [Lipid transport and metabolism]; Biotin carboxylase is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 440208 [Multi-domain]  Cd Length: 263  Bit Score: 92.24  E-value: 3.70e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  86 AAGLKIFGPTAGAAQLEGSKAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLEEAE 165
Cdd:COG0439   36 AEELGLPGPSPEAIRAMRDKVLMREALAAAGVPVPGFALVDSPEEALAFAEEIGYPVVVKPADGAGSRGVRVVRDEEELE 115
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 166 AAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKrvgdkdTGPNTGGMGAYSPAPvVTDDVHQ 245
Cdd:COG0439  116 AALAEARAEAKAGSPNGEVLVEEFLEGREYSVEGLVRDGEVVVCSITRKHQ------KPPYFVELGHEAPSP-LPEELRA 188
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 985002779 246 RTMERiiwpTVKGMAAEGNTYtGFLYAGLMIDKQGNPKVIEFNCRFG 292
Cdd:COG0439  189 EIGEL----VARALRALGYRR-GAFHTEFLLTPDGEPYLIEINARLG 230
PRK06019 PRK06019
phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
1-206 1.74e-08

phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed


Pssm-ID: 235674 [Multi-domain]  Cd Length: 372  Bit Score: 55.93  E-value: 1.74e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779   1 MKVLVIGNG--GREHALAwkaAQsPL-VETVFVAPGNAGTALEPALQNVAIGVTDIPALLDFAQ--------NEKIDLTI 69
Cdd:PRK06019   3 KTIGIIGGGqlGRMLALA---AA-PLgYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEqcdvityeFENVPAEA 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  70 VGPEAPLVKGVVdtfraaGLKIFGPTAgaaqlegSKAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKGAPIVIKA--- 146
Cdd:PRK06019  79 LDALAARVPVPP------GPDALAIAQ-------DRLTEKQFLDKLGIPVAPFAVVDSAEDLEAALADLGLPAVLKTrrg 145
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 985002779 147 --DglaaGKGVIVAMTLEEAEAAVHDMLAGNAfgdaghriVIEEFLDGE-EASFIVM--VDGEHV 206
Cdd:PRK06019 146 gyD----GKGQWVIRSAEDLEAAWALLGSVPC--------ILEEFVPFErEVSVIVArgRDGEVV 198
DdlA COG1181
D-alanine-D-alanine ligase or related ATP-grasp enzyme [Cell wall/membrane/envelope biogenesis, ...
105-209 2.04e-08

D-alanine-D-alanine ligase or related ATP-grasp enzyme [Cell wall/membrane/envelope biogenesis, General function prediction only]; D-alanine-D-alanine ligase or related ATP-grasp enzyme is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440794 [Multi-domain]  Cd Length: 303  Bit Score: 55.50  E-value: 2.04e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 105 KAFTKDFLARHKIPTAEYQNFTEVEPALAYLREK--GAPIVIKADGLAAGKGVIVAMTLEEAEAAVHDMLAGnafgdaGH 182
Cdd:COG1181   96 KALTKRVLAAAGLPTPPYVVLRRGELADLEAIEEelGLPLFVKPAREGSSVGVSKVKNAEELAAALEEAFKY------DD 169
                         90       100
                 ....*....|....*....|....*...
gi 985002779 183 RIVIEEFLDGEEASFIVMVDGE-HVLPM 209
Cdd:COG1181  170 KVLVEEFIDGREVTVGVLGNGGpRALPP 197
PurK COG0026
Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and ...
109-206 7.30e-08

Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]; Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 439797 [Multi-domain]  Cd Length: 353  Bit Score: 53.92  E-value: 7.30e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 109 KDFLARHKIPTAEYQNFTEVEPALAYLREKGAPIVIKA-----DglaaGKGVIVAMTLEEAEAAVHDMlagnafgdAGHR 183
Cdd:COG0026   94 KAFLAELGIPVAPFAAVDSLEDLEAAIAELGLPAVLKTrrggyD----GKGQVVIKSAADLEAAWAAL--------GGGP 161
                         90       100
                 ....*....|....*....|....*.
gi 985002779 184 IVIEEFLDGE-EASFIVM--VDGEHV 206
Cdd:COG0026  162 CILEEFVPFErELSVIVArsPDGEVA 187
LysX COG0189
Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily [Amino acid transport ...
79-288 1.27e-07

Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily [Amino acid transport and metabolism, Coenzyme transport and metabolism, Translation, ribosomal structure and biogenesis, Secondary metabolites biosynthesis, transport and catabolism]; Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily is part of the Pathway/BioSystem: Lysine biosynthesis


Pssm-ID: 439959 [Multi-domain]  Cd Length: 289  Bit Score: 52.64  E-value: 1.27e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  79 GVVDTFRAAGLKIFGPTAgAAQLEGSKAFTKDFLARHKIPTAEyqnfTEV----EPALAYLREKGAPIVIK-ADGlAAGK 153
Cdd:COG0189   72 ALLRQLEAAGVPVVNDPE-AIRRARDKLFTLQLLARAGIPVPP----TLVtrdpDDLRAFLEELGGPVVLKpLDG-SGGR 145
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 154 GVIVAMTLEEAEAAVHDMlagnaFGDAGHRIVIEEFLDGEEASF--IVMVDGEHVLPMA--TSQDHKRVgdkdtgpNTGG 229
Cdd:COG0189  146 GVFLVEDEDALESILEAL-----TELGSEPVLVQEFIPEEDGRDirVLVVGGEPVAAIRriPAEGEFRT-------NLAR 213
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 230 MGAYSPAPVvtddvhqrtMERIIWPTVKGMAAegntyTGFLYAGL-MIDKQGNPKVIEFN 288
Cdd:COG0189  214 GGRAEPVEL---------TDEERELALRAAPA-----LGLDFAGVdLIEDDDGPLVLEVN 259
PRK12767 PRK12767
carbamoyl phosphate synthase-like protein; Provisional
1-292 3.72e-07

carbamoyl phosphate synthase-like protein; Provisional


Pssm-ID: 237195 [Multi-domain]  Cd Length: 326  Bit Score: 51.81  E-value: 3.72e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779   1 MKVLVIGnGGREHAL--AWKAAQSPLveTVFVA-PGNAGTALEPALQNVAI-GVTD---IPALLDFAQNEKIDLTIVG-- 71
Cdd:PRK12767   2 MNILVTS-AGRRVQLvkALKKSLLKG--RVIGAdISELAPALYFADKFYVVpKVTDpnyIDRLLDICKKEKIDLLIPLid 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  72 PEAPLVKGVVDTFRAAGLKIFGPTAGAAQLEGSKAFTKDFLARHKIPTAEYQNFTEVEPALAYLREK--GAPIVIKADGL 149
Cdd:PRK12767  79 PELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPESLEDFKAALAKGelQFPLFVKPRDG 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 150 AAGKGVIVAMTLEEAEAAVHDMLAgnafgdaghrIVIEEFLDGEEASFIVMVD--GEHV--LPMatsqdhKRVGDKDtgp 225
Cdd:PRK12767 159 SASIGVFKVNDKEELEFLLEYVPN----------LIIQEFIEGQEYTVDVLCDlnGEVIsiVPR------KRIEVRA--- 219
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 226 ntggmGAYSPAPVVTDDVHQRTMERIiwptVKGMAAEGNtytgflyagLMID---KQGNPKVIEFNCRFG 292
Cdd:PRK12767 220 -----GETSKGVTVKDPELFKLAERL----AEALGARGP---------LNIQcfvTDGEPYLFEINPRFG 271
COG3919 COG3919
Predicted ATP-dependent carboligase, ATP-grasp superfamily [General function prediction only];
53-292 2.06e-06

Predicted ATP-dependent carboligase, ATP-grasp superfamily [General function prediction only];


Pssm-ID: 443124 [Multi-domain]  Cd Length: 382  Bit Score: 49.54  E-value: 2.06e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  53 IPALLDFAQNEKIDLtIVGPEAPLVKgVVDTFRA---AGLKIFGPTAGAAQLEGSKAFTKDFLARHKIPTAEYQNFTEVE 129
Cdd:COG3919   65 VDALLELAERHGPDV-LIPTGDEYVE-LLSRHRDeleEHYRLPYPDADLLDRLLDKERFYELAEELGVPVPKTVVLDSAD 142
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 130 PALAYLREKGAPIVIK-ADGLAA-------GKGVIVAMTLEEAEAAVHDMLagnafgDAGHRIVIEEFL---DGEEASFI 198
Cdd:COG3919  143 DLDALAEDLGFPVVVKpADSVGYdelsfpgKKKVFYVDDREELLALLRRIA------AAGYELIVQEYIpgdDGEMRGLT 216
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 199 VMVDGEHVLPMATSQdHKRVGDkdtgPNTGGmgayspAPVVTDDVHQRTMERIiwpTVKGMAAEGntYTGFLYAGLMID- 277
Cdd:COG3919  217 AYVDRDGEVVATFTG-RKLRHY----PPAGG------NSAARESVDDPELEEA---ARRLLEALG--YHGFANVEFKRDp 280
                        250
                 ....*....|....*
gi 985002779 278 KQGNPKVIEFNCRFG 292
Cdd:COG3919  281 RDGEYKLIEINPRFW 295
PRK12833 PRK12833
acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
86-207 2.15e-05

acetyl-CoA carboxylase biotin carboxylase subunit; Provisional


Pssm-ID: 183781 [Multi-domain]  Cd Length: 467  Bit Score: 46.67  E-value: 2.15e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  86 AAGLKIFGPTAGAAQLEGSKAFTKDFLARHKIPTAEYQN--FTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLEE 163
Cdd:PRK12833 100 AAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDgvVASLDAALEVAARIGYPLMIKAAAGGGGRGIRVAHDAAQ 179
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 985002779 164 --AEAAVHDMLAGNAFGDAGhrIVIEEFLdgEEASFI---VMVDGEHVL 207
Cdd:PRK12833 180 laAELPLAQREAQAAFGDGG--VYLERFI--ARARHIevqILGDGERVV 224
CPSaseII_lrg TIGR01369
carbamoyl-phosphate synthase, large subunit; Carbamoyl-phosphate synthase (CPSase) catalyzes ...
57-290 8.76e-05

carbamoyl-phosphate synthase, large subunit; Carbamoyl-phosphate synthase (CPSase) catalyzes the first committed step in pyrimidine, arginine, and urea biosynthesis. In general, it is a glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II in eukaryotes. An exception is the mammalian mitochondrial urea-cycle form, CPSase I, in which the glutamine amidotransferase domain active site Cys on the small subunit has been lost, and the enzyme is ammonia-dependent. In both CPSase I and the closely related, glutamine-dependent CPSase III (allosterically activated by acetyl-glutamate) demonstrated in some other vertebrates, the small and large chain regions are fused in a single polypeptide chain. This model represents the large chain of glutamine-hydrolysing carbamoyl-phosphate synthases, or the corresponding regions of larger, multifunctional proteins, as found in all domains of life, and CPSase I forms are considered exceptions within the family. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]


Pssm-ID: 273581 [Multi-domain]  Cd Length: 1050  Bit Score: 44.99  E-value: 8.76e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779    57 LDFAQNEKIDLTIV--GPEAPLvkGVVDTFRAAGLKIFGpTAGAA--QLEGSKAFTKdFLARHKIPTAEYQNFTEVEPAL 132
Cdd:TIGR01369  622 MNIIELEKPEGVIVqfGGQTPL--NLAKALEEAGVPILG-TSPESidRAEDREKFSE-LLDELGIPQPKWKTATSVEEAV 697
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779   133 AYLREKGAPIVIKADGLAAGKGVIVAMTLEEAEAAVHDMLAGNAfgdaGHRIVIEEFL-DGEEASFIVMVDGEHVLPMAT 211
Cdd:TIGR01369  698 EFASEIGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVAVSP----EHPVLIDKYLeDAVEVDVDAVSDGEEVLIPGI 773
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779   212 SQDHKRvgdkdTGPNTGGMGAYSPAPVVTDDVHQRtMERIiwptVKGMAAEGNtytgflYAGLM----IDKQGNPKVIEF 287
Cdd:TIGR01369  774 MEHIEE-----AGVHSGDSTCVLPPQTLSAEIVDR-IKDI----VRKIAKELN------VKGLMniqfAVKDGEVYVIEV 837

                   ...
gi 985002779   288 NCR 290
Cdd:TIGR01369  838 NPR 840
PRK02471 PRK02471
bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB;
105-204 1.08e-04

bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB;


Pssm-ID: 179427 [Multi-domain]  Cd Length: 752  Bit Score: 44.53  E-value: 1.08e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 105 KAFTKDFLARHKIPTAEYQNFTEVEPALAYLRE-KGAPIVIKADGLAAGKGVIV---AMTLEEAEAAVhDMlagnAFGDA 180
Cdd:PRK02471 489 KVVTKKILAEAGFPVPAGDEFTSLEEALADYSLfADKAIVVKPKSTNFGLGISIfkePASLEDYEKAL-EI----AFRED 563
                         90       100
                 ....*....|....*....|....
gi 985002779 181 GHrIVIEEFLDGEEASFIVMvDGE 204
Cdd:PRK02471 564 SS-VLVEEFIVGTEYRFFVL-DGK 585
ATP-grasp_3 pfam02655
ATP-grasp domain; No functional information or experimental verification of function is known ...
103-294 2.82e-04

ATP-grasp domain; No functional information or experimental verification of function is known in this family. This family appears to be an ATP-grasp domain (Pers. obs. A Bateman).


Pssm-ID: 396979 [Multi-domain]  Cd Length: 160  Bit Score: 41.22  E-value: 2.82e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  103 GSKAFTKDFLARHKIPTAEYQNFTEvepalayLREKGAPIVIK-ADGlAAGKGVIVAMTLEEAEAAVHDMLagnafgdag 181
Cdd:pfam02655   2 SDKLKTYKALKNAGVPTPETLQAEE-------LLREEKKYVVKpRDG-CGGEGVRKVENGREDEAFIENVL--------- 64
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  182 hrivIEEFLDGEEASFIVMVDGEHVLPMATSQDHkrVGdkdtgpNTGGMGAYSPAPVVTDDVHQRTMERIiwptVKGMAA 261
Cdd:pfam02655  65 ----VQEFIEGEPLSVSLLSDGEKALPLSVNRQY--ID------NGGSGFVYAGNVTPSRTELKEEIIEL----AEEVVE 128
                         170       180       190
                  ....*....|....*....|....*....|...
gi 985002779  262 EGNTYTGFLYAGLMIDKQGnPKVIEFNCRFGDP 294
Cdd:pfam02655 129 CLPGLRGYVGVDLVLKDNE-PYVIEVNPRITTS 160
sucC PRK00696
ADP-forming succinate--CoA ligase subunit beta;
109-191 3.00e-04

ADP-forming succinate--CoA ligase subunit beta;


Pssm-ID: 234813 [Multi-domain]  Cd Length: 388  Bit Score: 42.77  E-value: 3.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 109 KDFLARHKIPTAEYQNFTEVEPALAYLRE-KGAPIVIKADGLAAGKG----VIVAMTLEEAEAAVHDML----AGNAFGD 179
Cdd:PRK00696   9 KELFAKYGVPVPRGIVATTPEEAVEAAEElGGGVWVVKAQVHAGGRGkaggVKLAKSPEEAREFAKQILgmtlVTHQTGP 88
                         90
                 ....*....|....*
gi 985002779 180 AGH---RIVIEEFLD 191
Cdd:PRK00696  89 KGQpvnKVLVEEGAD 103
PRK08591 PRK08591
acetyl-CoA carboxylase biotin carboxylase subunit; Validated
85-191 3.14e-04

acetyl-CoA carboxylase biotin carboxylase subunit; Validated


Pssm-ID: 236307 [Multi-domain]  Cd Length: 451  Bit Score: 42.87  E-value: 3.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  85 RAAGLKIFGPTAGAAQLEGSKAFTKDFLARHKIPTAEYQN--FTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLE 162
Cdd:PRK08591  96 EDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDgpVDDEEEALAIAKEIGYPVIIKATAGGGGRGMRVVRTEA 175
                         90       100       110
                 ....*....|....*....|....*....|..
gi 985002779 163 EAEAAVHdML---AGNAFGDAGhrIVIEEFLD 191
Cdd:PRK08591 176 ELEKAFS-MAraeAKAAFGNPG--VYMEKYLE 204
ddl PRK01372
D-alanine--D-alanine ligase; Reviewed
105-208 5.16e-04

D-alanine--D-alanine ligase; Reviewed


Pssm-ID: 234948 [Multi-domain]  Cd Length: 304  Bit Score: 41.64  E-value: 5.16e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 105 KAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKGAPIVIKadglAAGKGVIVAMTLEEAEAAVHDMLAGNA-FGDaghR 183
Cdd:PRK01372  99 KLRTKLVWQAAGLPTPPWIVLTREEDLLAAIDKLGLPLVVK----PAREGSSVGVSKVKEEDELQAALELAFkYDD---E 171
                         90       100
                 ....*....|....*....|....*
gi 985002779 184 IVIEEFLDGEEasFIVMVDGEHVLP 208
Cdd:PRK01372 172 VLVEKYIKGRE--LTVAVLGGKALP 194
carB PRK12815
carbamoyl phosphate synthase large subunit; Reviewed
57-207 9.06e-04

carbamoyl phosphate synthase large subunit; Reviewed


Pssm-ID: 237215 [Multi-domain]  Cd Length: 1068  Bit Score: 41.88  E-value: 9.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779   57 LDFAQNEKIDLTIV--GPEAPLvkGVVDTFRAAGLKIFGPTAGAA-QLEGSKAFTKdFLARHKIPTAEYQNFTEVEPALA 133
Cdd:PRK12815  623 LNVAEAENIKGVIVqfGGQTAI--NLAKGLEEAGLTILGTSPDTIdRLEDRDRFYQ-LLDELGLPHVPGLTATDEEEAFA 699
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 985002779  134 YLREKGAPIVIKADGLAAGKGVIVAMTLEEAEAavhdMLAGNAfgDAGHRIVIEEFLDGEEASFIVMVDGEHVL 207
Cdd:PRK12815  700 FAKRIGYPVLIRPSYVIGGQGMAVVYDEPALEA----YLAENA--SQLYPILIDQFIDGKEYEVDAISDGEDVT 767
CPSase_L_D2 pfam02786
Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthase ...
128-252 1.47e-03

Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthase catalyzes the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold.


Pssm-ID: 397079 [Multi-domain]  Cd Length: 209  Bit Score: 39.60  E-value: 1.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  128 VEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLEEAEAAVHDML--AGNAFGDagHRIVIEEFLDG-EEASFIVMVDGE 204
Cdd:pfam02786  27 EEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNEEELAELFALALaeAPAAFGN--PQVLVEKSLKGpKHIEYQVLRDAH 104
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 985002779  205 ----HVLPMATSqDHKRVGDKDTgpntggmgaYSPAPVVTDDVHQRTMERII 252
Cdd:pfam02786 105 gnciTVCNRECS-DQRRTQKSIE---------VAPSQTLTDEERQMLREAAV 146
ATP-grasp_2 pfam08442
ATP-grasp domain;
109-191 1.65e-03

ATP-grasp domain;


Pssm-ID: 400651 [Multi-domain]  Cd Length: 202  Bit Score: 39.55  E-value: 1.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  109 KDFLARHKIPTAEYQNFTEVEPALAYLREKGAP-IVIKADGLAAGKG----VIVAMTLEEAEAAVHDMLAGN----AFGD 179
Cdd:pfam08442   8 KEIFAKYGIPVPRGEVATSPEEAEEIAKKLGGKvYVVKAQVLAGGRGkaggVKLAKSPEEAKEVAKEMLGKNlvtkQTGP 87
                          90
                  ....*....|....*
gi 985002779  180 AGH---RIVIEEFLD 191
Cdd:pfam08442  88 DGQpvnKVLVEEALD 102
PRK06111 PRK06111
acetyl-CoA carboxylase biotin carboxylase subunit; Validated
85-191 1.80e-03

acetyl-CoA carboxylase biotin carboxylase subunit; Validated


Pssm-ID: 180406 [Multi-domain]  Cd Length: 450  Bit Score: 40.40  E-value: 1.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  85 RAAGLKIFGPTAGAAQLEGSKAFTKDFLARHKIPT--AEYQNFTEVEPALAYLREKGAPIVIKAdglAAGKGVIvAMTLE 162
Cdd:PRK06111  96 KEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVvpGITTNLEDAEEAIAIARQIGYPVMLKA---SAGGGGI-GMQLV 171
                         90       100       110
                 ....*....|....*....|....*....|....*
gi 985002779 163 EAEAAVHDMLAGN------AFGDAghRIVIEEFLD 191
Cdd:PRK06111 172 ETEQELTKAFESNkkraanFFGNG--EMYIEKYIE 204
ATP-grasp pfam02222
ATP-grasp domain; This family does not contain all known ATP-grasp domain members. This family ...
113-204 2.02e-03

ATP-grasp domain; This family does not contain all known ATP-grasp domain members. This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity.


Pssm-ID: 396689 [Multi-domain]  Cd Length: 169  Bit Score: 38.77  E-value: 2.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  113 ARHKIPTAEYQNFTEVEPALAYLREKGAPIVIKADGLA-AGKGVIVAMTLEEAEAAVHDMLAGnafgdaghRIVIEEFLD 191
Cdd:pfam02222   1 QKLGLPTPRFMAAESLEELIEAGQELGYPCVVKARRGGyDGKGQYVVRSEADLPQAWEELGDG--------PVIVEEFVP 72
                          90
                  ....*....|....*.
gi 985002779  192 GE-EASFIVM--VDGE 204
Cdd:pfam02222  73 FDrELSVLVVrsVDGE 88
PRK07206 PRK07206
hypothetical protein; Provisional
1-290 3.12e-03

hypothetical protein; Provisional


Pssm-ID: 180883 [Multi-domain]  Cd Length: 416  Bit Score: 39.63  E-value: 3.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779   1 MKVLVIGNG---GREHALAWKAAQSPLVETVFVA--PGNAGTALEPALQNVAIGVTDIPALLDFAQNEKIDLTIVGPEAp 75
Cdd:PRK07206   2 MKKVVIVDPfssGKFLAPAFKKRGIEPIAVTSSCllDPYYYASFDTSDFIEVIINGDIDDLVEFLRKLGPEAIIAGAES- 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779  76 lvkGV--VDTFRAA-GLKIF-GPTAGAAQLEgsKAFTKDFLARHKIPTAEYQNFTEVEPALAYLRE---KGAPIVIKADG 148
Cdd:PRK07206  81 ---GVelADRLAEIlTPQYSnDPALSSARRN--KAEMINALAEAGLPAARQINTADWEEAEAWLREnglIDRPVVIKPLE 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 149 LAAGKGVIVAMTLEEAEAAVHDMLAG-NAFGDAGHRIVIEEFLDGEE-ASFIVMVDGEHVLPMATSQDHKRVGDkdtgpn 226
Cdd:PRK07206 156 SAGSDGVFICPAKGDWKHAFNAILGKaNKLGLVNETVLVQEYLIGTEyVVNFVSLDGNHLVTEIVRYHKTSLNS------ 229
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 985002779 227 tgGMGAYSPAPVV--TDDVHQRtmeriIWPTVKG-MAAEGNTYtGFLYAGLMIDKQGnPKVIEFNCR 290
Cdd:PRK07206 230 --GSTVYDYDEFLdySEPEYQE-----LVDYTKQaLDALGIKN-GPAHAEVMLTADG-PRLIEIGAR 287
ATP-grasp_4 pfam13535
ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent ...
139-203 4.06e-03

ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity.


Pssm-ID: 316093 [Multi-domain]  Cd Length: 160  Bit Score: 37.65  E-value: 4.06e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 985002779  139 GAPIVIKADGLAAGKGVIVAMTLEEAEAAVHDMLA--------GNAFGDAGHRIVIEEFLDGEEASfivmVDG 203
Cdd:pfam13535   2 PYPCVIKPSVGFFSVGVYKINNREEWKAAFAAIREeieqwkemYPEAVVDGGSFLVEEYIEGEEFA----VDA 70
PRK14016 PRK14016
cyanophycin synthetase; Provisional
105-194 4.44e-03

cyanophycin synthetase; Provisional


Pssm-ID: 237586 [Multi-domain]  Cd Length: 727  Bit Score: 39.37  E-value: 4.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985002779 105 KAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKGAPIVIK-ADGlAAGKGVIV-AMTLEEAEAAVHdmlAGNAFGDAgh 182
Cdd:PRK14016 215 KELTKRLLAAAGVPVPEGRVVTSAEDAWEAAEEIGYPVVVKpLDG-NHGRGVTVnITTREEIEAAYA---VASKESSD-- 288
                         90
                 ....*....|..
gi 985002779 183 rIVIEEFLDGEE 194
Cdd:PRK14016 289 -VIVERYIPGKD 299
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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