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Conserved domains on  [gi|985004815|gb|AMC98901|]
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oxidoreductase [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

FAD-dependent oxidoreductase( domain architecture ID 11484555)

FAD-dependent oxidoreductase similar to Escherichia coli probable electron transfer flavoprotein-quinone oxidoreductase YdiS that may accept electrons from YdiQ/YdiR and reduce a quinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10015 PRK10015
oxidoreductase; Provisional
 1-429 0e+00

oxidoreductase; Provisional


:

Pssm-ID: 182194 [Multi-domain]  Cd Length: 429  Bit Score: 877.00  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAVSAPVERKVTREKISFL 80
Cdd:PRK10015   1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815  81 TEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILAD 160
Cdd:PRK10015  81 TEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILAD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815 161 GVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCG 240
Cdd:PRK10015 161 GVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCG 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815 241 LGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNEGVMIVGDAAGFCLNLGFTVRGMDLA 320
Cdd:PRK10015 241 LGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRGMDLA 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815 321 IASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMVADIMNEMFTIDGKPNQ 400
Cdd:PRK10015 321 IASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMVADIMNDMFTIDGKPNQ 400

                        410       420
                 ....*....|....*....|....*....
gi 985004815 401 PVRKMIMGHAKKIGLINLLKDGIKGATAL 429
Cdd:PRK10015 401 PVRKMIMGHAKKIGLINLLKDGIKGATAL 429
 
Name Accession Description Interval E-value
PRK10015 PRK10015
oxidoreductase; Provisional
 1-429 0e+00

oxidoreductase; Provisional


Pssm-ID: 182194 [Multi-domain]  Cd Length: 429  Bit Score: 877.00  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAVSAPVERKVTREKISFL 80
Cdd:PRK10015   1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815  81 TEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILAD 160
Cdd:PRK10015  81 TEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILAD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815 161 GVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCG 240
Cdd:PRK10015 161 GVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCG 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815 241 LGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNEGVMIVGDAAGFCLNLGFTVRGMDLA 320
Cdd:PRK10015 241 LGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRGMDLA 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815 321 IASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMVADIMNEMFTIDGKPNQ 400
Cdd:PRK10015 321 IASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMVADIMNDMFTIDGKPNQ 400

                        410       420
                 ....*....|....*....|....*....
gi 985004815 401 PVRKMIMGHAKKIGLINLLKDGIKGATAL 429
Cdd:PRK10015 401 PVRKMIMGHAKKIGLINLLKDGIKGATAL 429
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
13-354 3.77e-56

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 186.71  E-value: 3.77e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815  13 AGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLyAHTLEAIIPgFAVSAPVERKVTREKISFLTEESAVTldfhr 92
Cdd:COG0644    1 AGPAGSAAARRLARAGLSVLLLEKGSFPGDKICGGGLL-PRALEELEP-LGLDEPLERPVRGARFYSPGGKSVEL----- 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815  93 eqpDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTgVQAGDDI-LEANVVILADGVNSMLGRSLG 171
Cdd:COG0644   74 ---PPGRGGGYVVDRARFDRWLAEQAEEAGAEVRTGTRVTDVLRDDGRVV-VRTGDGEeIRADYVVDADGARSLLARKLG 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815 172 MVPASD-PHHYAVGVKEVIGLTPEQINDrfnitgeEGAAWLFAGSPSDGlmGGGFLYT-NKDSISLGlvcglgdiahaqk 249
Cdd:COG0644  150 LKRRSDePQDYALAIKEHWELPPLEGVD-------PGAVEFFFGEGAPG--GYGWVFPlGDGRVSVG------------- 207

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815 250 svpqmledfkqhpairplisggklleysahmVPEGGLamVPQLVNEGVMIVGDAAGFClnLGFTVRGMDLAIASAQAAAT 329
Cdd:COG0644  208 -------------------------------IPLGGP--RPRLVGDGVLLVGDAAGFV--DPLTGEGIHLAMKSGRLAAE 252

                        330       340
                 ....*....|....*....|....*
gi 985004815 330 TVIAAKERADFSASSLAQYKRELEQ 354
Cdd:COG0644  253 AIAEALEGGDFSAEALAEYERRLRE 277
GG-red-SF TIGR02032
geranylgeranyl reductase family; This model represents a subfamily which includes ...
 6-306 6.30e-23

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 273936 [Multi-domain]  Cd Length: 295  Bit Score: 98.16  E-value: 6.30e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815    6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGfavSAPVERKVTREKISFlTEESA 85
Cdd:TIGR02032   1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRALEELDLPG---ELIVNLVRGARFFSP-NGDSV 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   86 vtldfhreQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDI-LEANVVILADGVNS 164
Cdd:TIGR02032  77 --------EIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTRVLDVEIHDDRVVVIVRGSEGtVTAKIVIGADGSRS 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815  165 MLGRSLGMVPasDPHHYAVGVKEVIGLTPEQINDRFN---ITG---EEGAAWLFagsPsdglMGggflytnKDSISLGLV 238
Cdd:TIGR02032 149 IVAKKLGLKK--EPREYGVAARAEVEMPDEEVDEDFVevyIDRgivPGGYGWVF---P----KG-------DGTANVGVG 212

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 985004815  239 cglGDIAHAQKSVPQMLEDFKQHpaiRPLISGGKLLEYSAHMVPEGGLAMVpqLVNEGVMIVGDAAGF 306
Cdd:TIGR02032 213 ---SRSAEEGEDPKKYLKDFLAR---RPELKDAETVEVCGALIPIGRPDEK--LVRGNVLLVGDAAGH 272
FAD_binding_3 pfam01494
FAD binding domain; This domain is involved in FAD binding in a number of enzymes.
 7-171 9.50e-11

FAD binding domain; This domain is involved in FAD binding in a number of enzymes.


Pssm-ID: 396193 [Multi-domain]  Cd Length: 348  Bit Score: 62.73  E-value: 9.50e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815    7 DAIVVGAGVAGSVAALVMARAGLDVLVIE---------RGDSAGCKNM----TGG---RLYAHTLEAIIPGFAVSAPvER 70
Cdd:pfam01494   3 DVLIVGGGPAGLMLALLLARAGVRVVLVErhattsvlpRAHGLNQRTMellrQAGledRILAEGVPHEGMGLAFYNT-RR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   71 kvtREKISFLTEESAVTldfhreqpDVPQhasytvlrNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGV---QAG 147
Cdd:pfam01494  82 ---RADLDFLTSPPRVT--------VYPQ--------TELEPILVEHAEARGAQVRFGTEVLSLEQDGDGVTAVvrdRRD 142

                         170       180
                  ....*....|....*....|....*.
gi 985004815  148 DDI--LEANVVILADGVNSMLGRSLG 171
Cdd:pfam01494 143 GEEytVRAKYLVGCDGGRSPVRKTLG 168
 
Name Accession Description Interval E-value
PRK10015 PRK10015
oxidoreductase; Provisional
 1-429 0e+00

oxidoreductase; Provisional


Pssm-ID: 182194 [Multi-domain]  Cd Length: 429  Bit Score: 877.00  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAVSAPVERKVTREKISFL 80
Cdd:PRK10015   1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815  81 TEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILAD 160
Cdd:PRK10015  81 TEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILAD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815 161 GVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCG 240
Cdd:PRK10015 161 GVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCG 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815 241 LGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNEGVMIVGDAAGFCLNLGFTVRGMDLA 320
Cdd:PRK10015 241 LGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRGMDLA 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815 321 IASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMVADIMNEMFTIDGKPNQ 400
Cdd:PRK10015 321 IASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMVADIMNDMFTIDGKPNQ 400

                        410       420
                 ....*....|....*....|....*....
gi 985004815 401 PVRKMIMGHAKKIGLINLLKDGIKGATAL 429
Cdd:PRK10015 401 PVRKMIMGHAKKIGLINLLKDGIKGATAL 429
PRK10157 PRK10157
putative oxidoreductase FixC; Provisional
 1-429 0e+00

putative oxidoreductase FixC; Provisional


Pssm-ID: 182273 [Multi-domain]  Cd Length: 428  Bit Score: 571.47  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAVSAPVERKVTREKISFL 80
Cdd:PRK10157   1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815  81 TEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILAD 160
Cdd:PRK10157  81 TEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILAD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815 161 GVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCG 240
Cdd:PRK10157 161 GVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCG 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815 241 LGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNEGVMIVGDAAGFCLNLGFTVRGMDLA 320
Cdd:PRK10157 241 LHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLA 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815 321 IASAQAAATTVIAAKERADFSASSLAQYKRELEQScVMRDMQHFRKIPALMENPRLFSQYPRMVADIMNEMFTIDGKPNQ 400
Cdd:PRK10157 321 IAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESG-PLRDMRMYQKLPAFLDNPRMFSGYPELAVGVARDLFTIDGSAPE 399

                        410       420
                 ....*....|....*....|....*....
gi 985004815 401 PVRKMIMGHAKKIGLINLLKDGIKGATAL 429
Cdd:PRK10157 400 LMRKKILRHGKKVGFINLIKDGMKGVTVL 428
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
13-354 3.77e-56

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 186.71  E-value: 3.77e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815  13 AGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLyAHTLEAIIPgFAVSAPVERKVTREKISFLTEESAVTldfhr 92
Cdd:COG0644    1 AGPAGSAAARRLARAGLSVLLLEKGSFPGDKICGGGLL-PRALEELEP-LGLDEPLERPVRGARFYSPGGKSVEL----- 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815  93 eqpDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTgVQAGDDI-LEANVVILADGVNSMLGRSLG 171
Cdd:COG0644   74 ---PPGRGGGYVVDRARFDRWLAEQAEEAGAEVRTGTRVTDVLRDDGRVV-VRTGDGEeIRADYVVDADGARSLLARKLG 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815 172 MVPASD-PHHYAVGVKEVIGLTPEQINDrfnitgeEGAAWLFAGSPSDGlmGGGFLYT-NKDSISLGlvcglgdiahaqk 249
Cdd:COG0644  150 LKRRSDePQDYALAIKEHWELPPLEGVD-------PGAVEFFFGEGAPG--GYGWVFPlGDGRVSVG------------- 207

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815 250 svpqmledfkqhpairplisggklleysahmVPEGGLamVPQLVNEGVMIVGDAAGFClnLGFTVRGMDLAIASAQAAAT 329
Cdd:COG0644  208 -------------------------------IPLGGP--RPRLVGDGVLLVGDAAGFV--DPLTGEGIHLAMKSGRLAAE 252

                        330       340
                 ....*....|....*....|....*
gi 985004815 330 TVIAAKERADFSASSLAQYKRELEQ 354
Cdd:COG0644  253 AIAEALEGGDFSAEALAEYERRLRE 277
GG-red-SF TIGR02032
geranylgeranyl reductase family; This model represents a subfamily which includes ...
 6-306 6.30e-23

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 273936 [Multi-domain]  Cd Length: 295  Bit Score: 98.16  E-value: 6.30e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815    6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGfavSAPVERKVTREKISFlTEESA 85
Cdd:TIGR02032   1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRALEELDLPG---ELIVNLVRGARFFSP-NGDSV 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   86 vtldfhreQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDI-LEANVVILADGVNS 164
Cdd:TIGR02032  77 --------EIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTRVLDVEIHDDRVVVIVRGSEGtVTAKIVIGADGSRS 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815  165 MLGRSLGMVPasDPHHYAVGVKEVIGLTPEQINDRFN---ITG---EEGAAWLFagsPsdglMGggflytnKDSISLGLV 238
Cdd:TIGR02032 149 IVAKKLGLKK--EPREYGVAARAEVEMPDEEVDEDFVevyIDRgivPGGYGWVF---P----KG-------DGTANVGVG 212

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 985004815  239 cglGDIAHAQKSVPQMLEDFKQHpaiRPLISGGKLLEYSAHMVPEGGLAMVpqLVNEGVMIVGDAAGF 306
Cdd:TIGR02032 213 ---SRSAEEGEDPKKYLKDFLAR---RPELKDAETVEVCGALIPIGRPDEK--LVRGNVLLVGDAAGH 272
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 5-188 3.97e-19

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 87.69  E-value: 3.97e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGcknmTGGR---LYAHTLEA-----IIPGF-AVSAPVERKVTRE 75
Cdd:COG0654    3 RTDVLIVGGGPAGLALALALARAGIRVTVVERAPPPR----PDGRgiaLSPRSLELlrrlgLWDRLlARGAPIRGIRVRD 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815  76 KisfltEESAVTLDFHREQPDVPqhASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANV 155
Cdd:COG0654   79 G-----SDGRVLARFDAAETGLP--AGLVVPRADLERALLEAARALGVELRFGTEVTGLEQDADGVTVTLADGRTLRADL 151

                        170       180       190
                 ....*....|....*....|....*....|...
gi 985004815 156 VILADGVNSMLGRSLGMVPASDPHHYAVGVKEV 188
Cdd:COG0654  152 VVGADGARSAVRRLLGIGFTGRDYPQRALWAGV 184
PLN00093 PLN00093
geranylgeranyl diphosphate reductase; Provisional
 2-306 3.52e-16

geranylgeranyl diphosphate reductase; Provisional


Pssm-ID: 177713 [Multi-domain]  Cd Length: 450  Bit Score: 80.18  E-value: 3.52e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   2 SDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERgDSAGCKNMTGGRLYAHTLEAIIPgfavSAPVERKVTREKIsflT 81
Cdd:PLN00093  36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIER-KLDNAKPCGGAIPLCMVGEFDLP----LDIIDRKVTKMKM---I 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815  82 EESAVTLDFHREQPDvpqHASYTVLRNR-LDPWLMEQAEQAGAQFIPGVRVDALVREGNK---VTGVQAGDD-------- 149
Cdd:PLN00093 108 SPSNVAVDIGKTLKP---HEYIGMVRREvLDSFLRERAQSNGATLINGLFTRIDVPKDPNgpyVIHYTSYDSgsgagtpk 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815 150 ILEANVVILADGVNSMLGRSLGmvpASDpHHYAVGVKEVIGLTPEQINdrfniTGEEGAAWLFAGSPSDGLMGGGFLYTN 229
Cdd:PLN00093 185 TLEVDAVIGADGANSRVAKDID---AGD-YDYAIAFQERIKIPDDKME-----YYEDLAEMYVGDDVSPDFYGWVFPKCD 255

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815 230 KDSISLGLVCGLGDIAHAQKsvpqmledfkqhpAIR----PLISGGKLLEYSAHMVPEgglAMVPQLVNEGVMIVGDAAG 305
Cdd:PLN00093 256 HVAVGTGTVVNKPAIKKYQR-------------ATRnrakDKIAGGKIIRVEAHPIPE---HPRPRRVRGRVALVGDAAG 319


                 .
gi 985004815 306 F 306
Cdd:PLN00093 320 Y 320
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
5-174 3.38e-14

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 73.40  E-value: 3.38e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGD-------------SAGCKNMTGGRLYA------HTLEAIIPGFAVS 65
Cdd:COG0665    2 TADVVVIGGGIAGLSTAYHLARRGLDVTVLERGRpgsgasgrnagqlRPGLAALADRALVRlarealDLWRELAAELGID 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815  66 APVERK------VTREKISFLTEESAV---------TLD---FHREQPDVPQHASYTVLRN----RLDP-----WLMEQA 118
Cdd:COG0665   82 CDFRRTgvlylaRTEAELAALRAEAEAlralglpveLLDaaeLREREPGLGSPDYAGGLYDpddgHVDPaklvrALARAA 161

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 985004815 119 EQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILA-----DGVNSMLGRSLGMVP 174
Cdd:COG0665  162 RAAGVRIREGTPVTGLEREGGRVTGVRTERGTVRADAVVLAagawsARLLPMLGLRLPLRP 222
SdhA COG1053
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ...
 3-161 1.69e-13

Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 440673 [Multi-domain]  Cd Length: 443  Bit Score: 71.79  E-value: 1.69e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIE-----RGDSAgcknMTGGRLYAhtleaiiPGFAVSAPVE-------- 69
Cdd:COG1053    1 DHEYDVVVVGSGGAGLRAALEAAEAGLKVLVLEkvpprGGHTA----AAQGGINA-------AGTNVQKAAGedspeehf 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815  70 ---RKVTR-----EKISFLTEESAVTLDF---------HREQPDVPQHASYTVLRNRLDPW---------LMEQAEQAGA 123
Cdd:COG1053   70 ydtVKGGDgladqDLVEALAEEAPEAIDWleaqgvpfsRTPDGRLPQFGGHSVGRTCYAGDgtghallatLYQAALRLGV 149

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 985004815 124 QFIPGVRVDALVREGNKVTGVQAGDD-----ILEANVVILADG 161
Cdd:COG1053  150 EIFTETEVLDLIVDDGRVVGVVARDRtgeivRIRAKAVVLATG 192
PRK06185 PRK06185
FAD-dependent oxidoreductase;
10-179 1.20e-11

FAD-dependent oxidoreductase;


Pssm-ID: 235729 [Multi-domain]  Cd Length: 407  Bit Score: 66.04  E-value: 1.20e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815  10 VVGAGVAGSVAALVMARAGLDVLVIE---------RGDSagcknmtggrLYAHTLEAI-----IPGFAvsapvERKVTR- 74
Cdd:PRK06185  11 IVGGGPAGMMLGLLLARAGVDVTVLEkhadflrdfRGDT----------VHPSTLELMdelglLERFL-----ELPHQKv 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815  75 EKISFLTEESAVTL-DFHReqpdVPQHASYtvlrnrldPWLMEQ-------AEQAGA----QFIPGVRVDALVREGNKVT 142
Cdd:PRK06185  76 RTLRFEIGGRTVTLaDFSR----LPTPYPY--------IAMMPQwdfldflAEEASAypnfTLRMGAEVTGLIEEGGRVT 143

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 985004815 143 GVQA----GDDILEANVVILADGVNSMLGRSLGMVPASDPH 179
Cdd:PRK06185 144 GVRArtpdGPGEIRADLVVGADGRHSRVRALAGLEVREFGA 184
FAD_binding_3 pfam01494
FAD binding domain; This domain is involved in FAD binding in a number of enzymes.
 7-171 9.50e-11

FAD binding domain; This domain is involved in FAD binding in a number of enzymes.


Pssm-ID: 396193 [Multi-domain]  Cd Length: 348  Bit Score: 62.73  E-value: 9.50e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815    7 DAIVVGAGVAGSVAALVMARAGLDVLVIE---------RGDSAGCKNM----TGG---RLYAHTLEAIIPGFAVSAPvER 70
Cdd:pfam01494   3 DVLIVGGGPAGLMLALLLARAGVRVVLVErhattsvlpRAHGLNQRTMellrQAGledRILAEGVPHEGMGLAFYNT-RR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   71 kvtREKISFLTEESAVTldfhreqpDVPQhasytvlrNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGV---QAG 147
Cdd:pfam01494  82 ---RADLDFLTSPPRVT--------VYPQ--------TELEPILVEHAEARGAQVRFGTEVLSLEQDGDGVTAVvrdRRD 142

                         170       180
                  ....*....|....*....|....*.
gi 985004815  148 DDI--LEANVVILADGVNSMLGRSLG 171
Cdd:pfam01494 143 GEEytVRAKYLVGCDGGRSPVRKTLG 168
FAD_oxidored pfam12831
FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases ...
 7-157 1.65e-10

FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases and related proteins.


Pssm-ID: 432816 [Multi-domain]  Cd Length: 420  Bit Score: 62.63  E-value: 1.65e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815    7 DAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGcKNMTGGRLYahtleAIIPGFAVSAPVERKVTREkisFLTEesav 86
Cdd:pfam12831   1 DVVVVGGGPAGVAAAIAAARAGAKVLLVERRGFLG-GMLTSGLVG-----PDMGFYLNKEQVVGGIARE---FRQR---- 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   87 tldfHREQPDVPQHASYTVLRNRLDPWLMEQA-----EQAGAQFIPGVRVDALVREGNKVTGVQ----AGDDILEANVVI 157
Cdd:pfam12831  68 ----LRARGGLPGPYGLRGGWVPFDPEVAKAVldemlAEAGVTVLLHTRVVGVVKEGGRITGVTvetkGGRITIRAKVFI 143
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 4-62 8.42e-10

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 60.63  E-value: 8.42e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 985004815   4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAgcknmtGGRlyAHTLEaiIPGF 62
Cdd:COG1233    2 MMYDVVVIGAGIGGLAAAALLARAGYRVTVLEKNDTP------GGR--ARTFE--RPGF 50
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 7-174 1.95e-08

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 55.87  E-value: 1.95e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815    7 DAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNmTGgrlyaHTLEAIIPGFAVSAPVER----KVTREKISFLTE 82
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDPGSGA-SG-----RNAGLIHPGLRYLEPSELarlaLEALDLWEELEE 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   83 ESAVTLDFHR----------EQPDVPQHASYTVLRN-------------------------------RLDP-----WLME 116
Cdd:pfam01266  75 ELGIDCGFRRcgvlvlardeEEEALEKLLAALRRLGvpaelldaeelrelepllpglrgglfypdggHVDParllrALAR 154

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 985004815  117 QAEQAGAQFIPGVRVDALVREGNKVTGVQAGddilEANVVILADGVNSMLGRSLGMVP 174
Cdd:pfam01266 155 AAEALGVRIIEGTEVTGIEEEGGVWGVVTTG----EADAVVNAAGAWADLLALPGLRL 208
COG2509 COG2509
FAD-dependent dehydrogenase [General function prediction only];
1-37 1.52e-07

FAD-dependent dehydrogenase [General function prediction only];


Pssm-ID: 441999 [Multi-domain]  Cd Length: 466  Bit Score: 53.19  E-value: 1.52e-07
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 985004815   1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERG 37
Cdd:COG2509   26 IPSLKYDVVIVGAGPAGLFAALELAEAGLKPLVLERG 62
PRK00711 PRK00711
D-amino acid dehydrogenase;
114-164 1.57e-07

D-amino acid dehydrogenase;


Pssm-ID: 234819 [Multi-domain]  Cd Length: 416  Bit Score: 53.26  E-value: 1.57e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 985004815 114 LMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNS 164
Cdd:PRK00711 207 LAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGGVITADAYVVALGSYS 257
PRK07121 PRK07121
FAD-binding protein;
3-52 1.69e-07

FAD-binding protein;


Pssm-ID: 180854 [Multi-domain]  Cd Length: 492  Bit Score: 53.35  E-value: 1.69e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 985004815   3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA-GCKNMTGGRLYA 52
Cdd:PRK07121  18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAgGATALSGGVIYL 68
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
6-162 2.46e-07

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 52.04  E-value: 2.46e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGdsagcknMTGGRLyaHTLEAI--IPGFavsapverkvtREKISfltee 83
Cdd:COG0492    1 YDVVIIGAGPAGLTAAIYAARAGLKTLVIEGG-------EPGGQL--ATTKEIenYPGF-----------PEGIS----- 55

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 985004815  84 savtldfhreQPDvpqhasytvLRNRldpwLMEQAEQAGAQFIPGvRVDALVREGNKVTGVQAGDDILEANVVILADGV 162
Cdd:COG0492   56 ----------GPE---------LAER----LREQAERFGAEILLE-EVTSVDKDDGPFRVTTDDGTEYEAKAVIIATGA 110
FAD_binding_2 pfam00890
FAD binding domain; This family includes members that bind FAD. This family includes the ...
 7-161 5.72e-07

FAD binding domain; This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.


Pssm-ID: 395718 [Multi-domain]  Cd Length: 398  Bit Score: 51.52  E-value: 5.72e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815    7 DAIVVGAGVAGSVAALVMARAGLDVLVIERGDS--------------AGCKNMTGGRLYAHTLEAIIPGFAVSAPVERKV 72
Cdd:pfam00890   1 DVLVIGGGLAGLAAALAAAEAGLKVAVVEKGQPfggatawssggidaLGNPPQGGIDSPELHPTDTLKGLDELADHPYVE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   73 T-----REKISFLTEESavtLDFHREQPDV-----------PQHASYTVLRNRLDPW--------LMEQAEQAGAQFIPG 128
Cdd:pfam00890  81 AfveaaPEAVDWLEALG---VPFSRTEDGHldlrplgglsaTWRTPHDAADRRRGLGtghallarLLEGLRKAGVDFQPR 157

                         170       180       190
                  ....*....|....*....|....*....|...
gi 985004815  129 VRVDALVREGNKVTGVQAGDDILEANVVILADG 161
Cdd:pfam00890 158 TAADDLIVEDGRVTGAVVENRRNGREVRIRAIA 190
PRK08274 PRK08274
FAD-dependent tricarballylate dehydrogenase TcuA;
2-238 2.05e-06

FAD-dependent tricarballylate dehydrogenase TcuA;


Pssm-ID: 236214 [Multi-domain]  Cd Length: 466  Bit Score: 49.87  E-value: 2.05e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   2 SDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA---GCKNMTGGRLYAH-TLEAIIPGfavSAPVER------K 71
Cdd:PRK08274   1 MASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREwrgGNSRHTRNLRCMHdAPQDVLVG---AYPEEEfwqdllR 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815  72 VT-----REKISFLTEESAVTLDFHREQpDVPQHASYT----VLRNRLDPW-----LMEQ----AEQAGAQFIPGVRVDA 133
Cdd:PRK08274  78 VTggrtdEALARLLIRESSDCRDWMRKH-GVRFQPPLSgalhVARTNAFFWgggkaLVNAlyrsAERLGVEIRYDAPVTA 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815 134 LVREGNKVTGVQAGDD-----ILEANVVILADG---VNS-MLGRSLGmvPASD-------PHHYAVGVKEVIGLTPEQIN 197
Cdd:PRK08274 157 LELDDGRFVGARAGSAaggaeRIRAKAVVLAAGgfeSNReWLREAWG--QPADnflvrgtPYNQGDLLKALLDAGADRIG 234

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 985004815 198 DRfniTGEEGAAWlFAGSPsdgLMGGGFLyTNKDSISLGLV 238
Cdd:PRK08274 235 DP---SQCHAVAI-DARAP---LYDGGIC-TRIDCVPLGIV 267
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
10-41 2.36e-06

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 44.83  E-value: 2.36e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 985004815   10 VVGAGVAGSVAALVMARAGLDVLVIERGDSAG 41
Cdd:pfam13450   1 IVGAGLAGLVAAALLAKRGFRVLVLEKRDRLG 32
PRK06370 PRK06370
FAD-containing oxidoreductase;
1-69 2.40e-06

FAD-containing oxidoreductase;


Pssm-ID: 235787 [Multi-domain]  Cd Length: 463  Bit Score: 49.43  E-value: 2.40e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG-CKNmTG----------GRLYAHTLEAIIPGFAVSAPVE 69
Cdd:PRK06370   1 TPAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGtCVN-TGcvptktliasARAAHLARRAAEYGVSVGGPVS 79
BetA COG2303
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General ...
 2-39 2.49e-06

Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]; Choline dehydrogenase or related flavoprotein is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 441878 [Multi-domain]  Cd Length: 531  Bit Score: 49.44  E-value: 2.49e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 985004815   2 SDDKFDAIVVGAGVAGSVAA--LVmARAGLDVLVIERGDS 39
Cdd:COG2303    1 MLEEYDYVIVGAGSAGCVLAnrLS-EDAGLRVLLLEAGGR 39
COG3573 COG3573
Predicted oxidoreductase [General function prediction only];
1-36 2.96e-06

Predicted oxidoreductase [General function prediction only];


Pssm-ID: 442794 [Multi-domain]  Cd Length: 551  Bit Score: 49.41  E-value: 2.96e-06
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 985004815   1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIER 36
Cdd:COG3573    1 MAAMDADVIVVGAGLAGLVAAAELADAGRRVLLLDQ 36
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
7-55 5.68e-06

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 48.38  E-value: 5.68e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 985004815   7 DAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAgcknmtGGRLYAHTL 55
Cdd:COG1231    9 DVVIVGAGLAGLAAARELRKAGLDVTVLEARDRV------GGRVWTLRF 51
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 1-41 7.44e-06

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 47.94  E-value: 7.44e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 985004815   1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG 41
Cdd:COG2072    2 AATEHVDVVVIGAGQAGLAAAYHLRRAGIDFVVLEKADDVG 42
PRK12843 PRK12843
FAD-dependent oxidoreductase;
3-41 8.93e-06

FAD-dependent oxidoreductase;


Pssm-ID: 237225 [Multi-domain]  Cd Length: 578  Bit Score: 47.81  E-value: 8.93e-06
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 985004815   3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG 41
Cdd:PRK12843  14 DAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVG 52
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
 3-37 9.36e-06

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 47.77  E-value: 9.36e-06
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 985004815   3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERG 37
Cdd:COG1249    1 MKDYDLVVIGAGPGGYVAAIRAAQLGLKVALVEKG 35
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 6-90 1.14e-05

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 46.93  E-value: 1.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815    6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGD---SAGCKNMTGGRLYAHTLEAIIPGFAVSAPVERKVTR--EKISFL 80
Cdd:pfam07992   1 YDVVVIGGGPAGLAAALTLAQLGGKVTLIEDEGtcpYGGCVLSKALLGAAEAPEIASLWADLYKRKEEVVKKlnNGIEVL 80

                          90
                  ....*....|
gi 985004815   81 TEESAVTLDF 90
Cdd:pfam07992  81 LGTEVVSIDP 90
PRK07843 PRK07843
3-oxosteroid 1-dehydrogenase;
1-36 1.17e-05

3-oxosteroid 1-dehydrogenase;


Pssm-ID: 236111 [Multi-domain]  Cd Length: 557  Bit Score: 47.34  E-value: 1.17e-05
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 985004815   1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIER 36
Cdd:PRK07843   3 MTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEK 38
PRK05249 PRK05249
Si-specific NAD(P)(+) transhydrogenase;
1-41 2.55e-05

Si-specific NAD(P)(+) transhydrogenase;


Pssm-ID: 235373 [Multi-domain]  Cd Length: 461  Bit Score: 46.30  E-value: 2.55e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 985004815   1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG 41
Cdd:PRK05249   1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVG 41
PRK05329 PRK05329
glycerol-3-phosphate dehydrogenase subunit GlpB;
5-40 4.22e-05

glycerol-3-phosphate dehydrogenase subunit GlpB;


Pssm-ID: 235412  Cd Length: 422  Bit Score: 45.61  E-value: 4.22e-05
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 985004815   5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA 40
Cdd:PRK05329   2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQGA 37
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
7-81 5.17e-05

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 45.62  E-value: 5.17e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 985004815   7 DAIVVGAGVAGSVAALVMARAGLDVLVIERGDSagcknmTGGRL--YAHTLEAIIPGFAVSAPVERKVTR-EKISFLT 81
Cdd:COG1148  142 RALVIGGGIAGMTAALELAEQGYEVYLVEKEPE------LGGRAaqLHKTFPGLDCPQCILEPLIAEVEAnPNITVYT 213
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
 4-37 6.51e-05

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 45.17  E-value: 6.51e-05
                         10        20        30
                 ....*....|....*....|....*....|....
gi 985004815   4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERG 37
Cdd:PRK06292   2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35
LhgO COG0579
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
2-42 1.66e-04

L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];


Pssm-ID: 440344 [Multi-domain]  Cd Length: 418  Bit Score: 43.60  E-value: 1.66e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 985004815   2 SDDKFDAIVVGAGVAG-SVAALVMARAGLDVLVIERGDSAGC 42
Cdd:COG0579    1 MMEMYDVVIIGAGIVGlALARELSRYEDLKVLVLEKEDDVAQ 42
MnmG COG0445
tRNA U34 5-carboxymethylaminomethyl modifying enzyme MnmG/GidA [Translation, ribosomal ...
 3-34 1.77e-04

tRNA U34 5-carboxymethylaminomethyl modifying enzyme MnmG/GidA [Translation, ribosomal structure and biogenesis]; tRNA U34 5-carboxymethylaminomethyl modifying enzyme MnmG/GidA is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440214 [Multi-domain]  Cd Length: 626  Bit Score: 43.84  E-value: 1.77e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 985004815   3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVI 34
Cdd:COG0445    4 PKEYDVIVVGGGHAGCEAALAAARMGAKTLLL 35
PRK12844 PRK12844
3-ketosteroid-delta-1-dehydrogenase; Reviewed
 3-51 1.89e-04

3-ketosteroid-delta-1-dehydrogenase; Reviewed


Pssm-ID: 183787 [Multi-domain]  Cd Length: 557  Bit Score: 43.59  E-value: 1.89e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 985004815   3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDS-AGCKNMTGGRLY 51
Cdd:PRK12844   4 DETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKvGGSTAMSGGVLW 53
HemY COG1232
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ...
 7-41 2.43e-04

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440845 [Multi-domain]  Cd Length: 443  Bit Score: 43.28  E-value: 2.43e-04
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 985004815   7 DAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG 41
Cdd:COG1232    3 RVAVIGGGIAGLTAAYRLAKAGHEVTVLEASDRVG 37
PTZ00367 PTZ00367
squalene epoxidase; Provisional
 6-36 3.55e-04

squalene epoxidase; Provisional


Pssm-ID: 240384 [Multi-domain]  Cd Length: 567  Bit Score: 42.92  E-value: 3.55e-04
                         10        20        30
                 ....*....|....*....|....*....|.
gi 985004815   6 FDAIVVGAGVAGSVAALVMARAGLDVLVIER 36
Cdd:PTZ00367  34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLER 64
PRK12834 PRK12834
putative FAD-binding dehydrogenase; Reviewed
 7-35 4.24e-04

putative FAD-binding dehydrogenase; Reviewed


Pssm-ID: 183782 [Multi-domain]  Cd Length: 549  Bit Score: 42.58  E-value: 4.24e-04
                         10        20
                 ....*....|....*....|....*....
gi 985004815   7 DAIVVGAGVAGSVAALVMARAGLDVLVIE 35
Cdd:PRK12834   6 DVIVVGAGLAGLVAAAELADAGKRVLLLD 34
PRK12842 PRK12842
putative succinate dehydrogenase; Reviewed
 1-61 4.41e-04

putative succinate dehydrogenase; Reviewed


Pssm-ID: 237224 [Multi-domain]  Cd Length: 574  Bit Score: 42.37  E-value: 4.41e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 985004815   1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDS-AGCKNMTGGRLYahtleaiIPG 61
Cdd:PRK12842   5 TNELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVfGGTTAFSGGVLW-------IPG 59
ubiF PRK08020
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
 1-36 4.55e-04

2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed


Pssm-ID: 181199 [Multi-domain]  Cd Length: 391  Bit Score: 42.28  E-value: 4.55e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 985004815   1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIER 36
Cdd:PRK08020   1 MTNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEH 36
solA PRK11259
N-methyl-L-tryptophan oxidase;
5-36 5.23e-04

N-methyl-L-tryptophan oxidase;


Pssm-ID: 236887 [Multi-domain]  Cd Length: 376  Bit Score: 42.13  E-value: 5.23e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 985004815   5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIER 36
Cdd:PRK11259   3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDR 34
Thi4 pfam01946
Thi4 family; This family includes Swiss:P32318 a putative thiamine biosynthetic enzyme.
 7-161 5.54e-04

Thi4 family; This family includes Swiss:P32318 a putative thiamine biosynthetic enzyme.


Pssm-ID: 460393  Cd Length: 232  Bit Score: 41.30  E-value: 5.54e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815    7 DAIVVGAGVAGSVAALVMARA-GLDVLVIERGDSAGCKNMTGGRLYahtleaiipgfavSAPVERKVTREkisFLtEESA 85
Cdd:pfam01946  19 DVVIVGAGSSGLTAAYYLAKNrGLKVAIIERSVSPGGGAWLGGQLF-------------SAMVVRKPAHL---FL-DEFG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   86 VTLDFHREQPDVPQHASYTVLrnrldpwLMEQAEQ-AGAQFIPGVRV-DALVREGNKVTGV--------QAGDDI----L 151
Cdd:pfam01946  82 IPYEDEGDYVVVKHAALFTST-------LMSKALQlPNVKLFNATSVeDLIVRPGVGVAGVvtnwtlveQAGLHMdpntI 154

                         170
                  ....*....|
gi 985004815  152 EANVVILADG 161
Cdd:pfam01946 155 RAKVVVSATG 164
PRK07608 PRK07608
UbiH/UbiF family hydroxylase;
1-185 5.86e-04

UbiH/UbiF family hydroxylase;


Pssm-ID: 181057 [Multi-domain]  Cd Length: 388  Bit Score: 41.86  E-value: 5.86e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIErgdsAGCKNMTGG-----RLYahtleAIIPG---FAVSAPVERKV 72
Cdd:PRK07608   1 AYHMKFDVVVVGGGLVGASLALALAQSGLRVALLA----PRAPPRPADdawdsRVY-----AISPSsqaFLERLGVWQAL 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815  73 TREKISFLTE-----ESAVTLDFHREQPDVPQHAsyTVLRNRLDPWLMEQA--EQAGAQFIPGvRVDALVREGNKVTGVQ 145
Cdd:PRK07608  72 DAARLAPVYDmrvfgDAHARLHFSAYQAGVPQLA--WIVESSLIERALWAAlrFQPNLTWFPA-RAQGLEVDPDAATLTL 148

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 985004815 146 AGDDILEANVVILADGVNSMLGRSLGMvPASDPHHYAVGV 185
Cdd:PRK07608 149 ADGQVLRADLVVGADGAHSWVRSQAGI-KAERRPYRQTGV 187
PRK06184 PRK06184
hypothetical protein; Provisional
 7-171 7.80e-04

hypothetical protein; Provisional


Pssm-ID: 235728 [Multi-domain]  Cd Length: 502  Bit Score: 41.51  E-value: 7.80e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   7 DAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAgcknMTGGR---LYAHTLE------AIIPGFAVSAPVER-KVTREK 76
Cdd:PRK06184   5 DVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP----FPGSRgkgIQPRTQEvfddlgVLDRVVAAGGLYPPmRIYRDD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815  77 ISFltEESAVTLDfHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGV---QAGDDILEA 153
Cdd:PRK06184  81 GSV--AESDMFAH-LEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARvagPAGEETVRA 157

                        170
                 ....*....|....*...
gi 985004815 154 NVVILADGVNSMLGRSLG 171
Cdd:PRK06184 158 RYLVGADGGRSFVRKALG 175
mhpA PRK06183
bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;
2-171 8.29e-04

bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;


Pssm-ID: 235727 [Multi-domain]  Cd Length: 500  Bit Score: 41.43  E-value: 8.29e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   2 SDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDsagcknmtggRLY------------AHTL------EAIIPgFA 63
Cdd:PRK06183   7 DAHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWP----------TLYdlpravgiddeaLRVLqaiglaDEVLP-HT 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815  64 VSAPVERkvtrekisFLTEESAVTLDFHR--------------EQPDVPQhasytVLRNRLdpwlmeqAEQAGAQFIPGV 129
Cdd:PRK06183  76 TPNHGMR--------FLDAKGRCLAEIARpstgefgwprrnafHQPLLEA-----VLRAGL-------ARFPHVRVRFGH 135

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 985004815 130 RVDALVREGNKVTGVQAGDD----ILEANVVILADGVNSMLGRSLG 171
Cdd:PRK06183 136 EVTALTQDDDGVTVTLTDADgqreTVRARYVVGCDGANSFVRRTLG 181
GIDA pfam01134
Glucose inhibited division protein A;
7-34 8.33e-04

Glucose inhibited division protein A;


Pssm-ID: 250388 [Multi-domain]  Cd Length: 391  Bit Score: 41.38  E-value: 8.33e-04
                          10        20
                  ....*....|....*....|....*...
gi 985004815    7 DAIVVGAGVAGSVAALVMARAGLDVLVI 34
Cdd:pfam01134   1 DVIVIGGGHAGCEAALAAARMGAKVLLI 28
PRK06416 PRK06416
dihydrolipoamide dehydrogenase; Reviewed
 2-44 8.78e-04

dihydrolipoamide dehydrogenase; Reviewed


Pssm-ID: 235798 [Multi-domain]  Cd Length: 462  Bit Score: 41.28  E-value: 8.78e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 985004815   2 SDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG-CKN 44
Cdd:PRK06416   1 FAFEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGtCLN 44
PRK09126 PRK09126
FAD-dependent hydroxylase;
3-171 1.03e-03

FAD-dependent hydroxylase;


Pssm-ID: 236385 [Multi-domain]  Cd Length: 392  Bit Score: 41.08  E-value: 1.03e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMT-GGRLYA------HTLEAI-----IPGFAVSAPVER 70
Cdd:PRK09126   1 MMHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAfDGREIAlthasrEILQRLgawdrIPEDEISPLRDA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815  71 KVTREKISFlteesAVTLDFHREQPD-----VPQH----ASYTVLRnrldpwlmeqaEQAGAQFIPGVRVDALVREGNKV 141
Cdd:PRK09126  81 KVLNGRSPF-----ALTFDARGRGADalgylVPNHlirrAAYEAVS-----------QQDGIELLTGTRVTAVRTDDDGA 144

                        170       180       190
                 ....*....|....*....|....*....|
gi 985004815 142 TGVQAGDDILEANVVILADGVNSMLGRSLG 171
Cdd:PRK09126 145 QVTLANGRRLTARLLVAADSRFSATRRQLG 174
PRK12835 PRK12835
3-ketosteroid-delta-1-dehydrogenase; Reviewed
 3-71 1.09e-03

3-ketosteroid-delta-1-dehydrogenase; Reviewed


Pssm-ID: 237221 [Multi-domain]  Cd Length: 584  Bit Score: 41.33  E-value: 1.09e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDS-AGCKNMTGGRLYahtleaiIPGfavsAPVERK 71
Cdd:PRK12835   9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHfGGSTALSGGGIW-------VPG----APAQRR 67
PRK07494 PRK07494
UbiH/UbiF family hydroxylase;
1-36 1.64e-03

UbiH/UbiF family hydroxylase;


Pssm-ID: 181001 [Multi-domain]  Cd Length: 388  Bit Score: 40.27  E-value: 1.64e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 985004815   1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIER 36
Cdd:PRK07494   3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAP 38
PRK07804 PRK07804
L-aspartate oxidase; Provisional
 7-38 2.07e-03

L-aspartate oxidase; Provisional


Pssm-ID: 236102 [Multi-domain]  Cd Length: 541  Bit Score: 40.34  E-value: 2.07e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 985004815   7 DAIVVGAGVAGSVAALVMARAGLDVLVIERGD 38
Cdd:PRK07804  18 DVVVVGSGVAGLTAALAARRAGRRVLVVTKAA 49
PRK05714 PRK05714
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
 7-171 2.31e-03

2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional


Pssm-ID: 168201 [Multi-domain]  Cd Length: 405  Bit Score: 40.20  E-value: 2.31e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   7 DAIVVGAGVAGSVAALVMARAGLDVLVIErgdsagcknmtGGRLYAHTLEAIIPgF-----AVSAPVERKVTR------- 74
Cdd:PRK05714   4 DLLIVGAGMVGSALALALQGSGLEVLLLD-----------GGPLSVKPFDPQAP-FeprvsALSAASQRILERlgawdgi 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815  75 --EKISFLTE----ESAVTLDFHREQPDVPQHASYTVLRNR-LDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAG 147
Cdd:PRK05714  72 aaRRASPYSEmqvwDGSGTGQIHFSAASVHAEVLGHIVENRvVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLAD 151

                        170       180
                 ....*....|....*....|....
gi 985004815 148 DDILEANVVILADGVNSMLGRSLG 171
Cdd:PRK05714 152 GRQLRAPLVVAADGANSAVRRLAG 175
PLN02576 PLN02576
protoporphyrinogen oxidase
 7-43 2.44e-03

protoporphyrinogen oxidase


Pssm-ID: 215314 [Multi-domain]  Cd Length: 496  Bit Score: 40.00  E-value: 2.44e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 985004815   7 DAIVVGAGVAGSVAAL-VMARAGLDVLVIERGDSAGCK 43
Cdd:PLN02576  14 DVAVVGAGVSGLAAAYaLASKHGVNVLVTEARDRVGGN 51
mnmC PRK01747
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent ...
 7-41 2.99e-03

bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;


Pssm-ID: 234978 [Multi-domain]  Cd Length: 662  Bit Score: 39.83  E-value: 2.99e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 985004815   7 DAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG 41
Cdd:PRK01747 262 DAAIIGGGIAGAALALALARRGWQVTLYEADEAPA 296
PRK07233 PRK07233
hypothetical protein; Provisional
 10-41 3.27e-03

hypothetical protein; Provisional


Pssm-ID: 235977 [Multi-domain]  Cd Length: 434  Bit Score: 39.48  E-value: 3.27e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 985004815  10 VVGAGVAGSVAALVMARAGLDVLVIERGDSAG 41
Cdd:PRK07233   4 IVGGGIAGLAAAYRLAKRGHEVTVFEADDQLG 35
Pyr_redox pfam00070
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 8-89 3.77e-03

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 425450 [Multi-domain]  Cd Length: 80  Bit Score: 36.03  E-value: 3.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815    8 AIVVGAGVAGSVAALVMARAGLDVLVIERGDSagcknmtggrlyahtleaIIPGF--AVSAPVERKVTREKISFLTEESA 85
Cdd:pfam00070   2 VVVVGGGYIGLELAGALARLGSKVTVVERRDR------------------LLPGFdpEIAKILQEKLEKNGIEFLLNTTV 63


                  ....
gi 985004815   86 VTLD 89
Cdd:pfam00070  64 EAIE 67
PLN02985 PLN02985
squalene monooxygenase
 2-170 4.22e-03

squalene monooxygenase


Pssm-ID: 178566 [Multi-domain]  Cd Length: 514  Bit Score: 39.50  E-value: 4.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   2 SDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNM-----TGGRLY------AHTLEAIIPGFAVSAPVER 70
Cdd:PLN02985  40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMgefmqPGGRFMlsklglEDCLEGIDAQKATGMAVYK 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815  71 kvtrekisfltEESAVTLDFHREQPDVPQHASYTVLRN-RLDPWLMEQAEQagaqfIPGVR-----VDALVREGNKVTGV 144
Cdd:PLN02985 120 -----------DGKEAVAPFPVDNNNFPYEPSARSFHNgRFVQRLRQKASS-----LPNVRleegtVKSLIEEKGVIKGV 183

                        170       180       190
                 ....*....|....*....|....*....|.
gi 985004815 145 ----QAGDDILE-ANVVILADGVNSMLGRSL 170
Cdd:PLN02985 184 tyknSAGEETTAlAPLTVVCDGCYSNLRRSL 214
soxA_mon TIGR01377
sarcosine oxidase, monomeric form; Sarcosine oxidase catalyzes the oxidative demethylation of ...
 6-41 4.61e-03

sarcosine oxidase, monomeric form; Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines]


Pssm-ID: 130444 [Multi-domain]  Cd Length: 380  Bit Score: 39.04  E-value: 4.61e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 985004815    6 FDAIVVGAGVAGSVAALVMARAGLDVLVIE-------RGDSAG 41
Cdd:TIGR01377   1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEqfdlphsRGSSHG 43
PRK12839 PRK12839
FAD-dependent oxidoreductase;
6-41 5.66e-03

FAD-dependent oxidoreductase;


Pssm-ID: 237223 [Multi-domain]  Cd Length: 572  Bit Score: 39.04  E-value: 5.66e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 985004815   6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG 41
Cdd:PRK12839   9 YDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCG 44
NadB COG0029
Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the ...
 5-40 6.61e-03

Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the Pathway/BioSystem: NAD biosynthesis


Pssm-ID: 439800 [Multi-domain]  Cd Length: 521  Bit Score: 38.55  E-value: 6.61e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 985004815   5 KFDAIVVGAGVAGSVAALVMARAGlDVLVI---ERGDSA 40
Cdd:COG0029    4 KTDVLVIGSGIAGLSAALKLAERG-RVTLLtkgELGESN 41
PRK06134 PRK06134
putative FAD-binding dehydrogenase; Reviewed
 7-36 6.99e-03

putative FAD-binding dehydrogenase; Reviewed


Pssm-ID: 180419 [Multi-domain]  Cd Length: 581  Bit Score: 38.55  E-value: 6.99e-03
                         10        20        30
                 ....*....|....*....|....*....|
gi 985004815   7 DAIVVGAGVAGSVAALVMARAGLDVLVIER 36
Cdd:PRK06134  14 DVLVIGSGAAGLSAAVTAAWHGLKVIVVEK 43
PRK07819 PRK07819
3-hydroxybutyryl-CoA dehydrogenase; Validated
 10-40 8.46e-03

3-hydroxybutyryl-CoA dehydrogenase; Validated


Pssm-ID: 181133 [Multi-domain]  Cd Length: 286  Bit Score: 38.04  E-value: 8.46e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 985004815  10 VVGAGVAGSVAALVMARAGLDVLVIERGDSA 40
Cdd:PRK07819  10 VVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40
NirB COG1251
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
8-184 8.86e-03

NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];


Pssm-ID: 440863 [Multi-domain]  Cd Length: 402  Bit Score: 38.20  E-value: 8.86e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815   8 AIVVGAGVAGSVAALVMARAGLDVLVIERGDsagcknmtggrlyahtleaiipgfavsapverkvtrekisflteesavt 87
Cdd:COG1251  145 VVVIGGGLIGLEAAAALRKRGLEVTVVERAP------------------------------------------------- 175

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004815  88 ldfhreqpdvpqhasyTVLRNRLDP----WLMEQAEQAGAQFIPGVRVDALVREGnKVTGVQ-AGDDILEANVVILADGV 162
Cdd:COG1251  176 ----------------RLLPRQLDEeagaLLQRLLEALGVEVRLGTGVTEIEGDD-RVTGVRlADGEELPADLVVVAIGV 238

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 985004815 163 --NSMLGRSLGMVPA-----------SDPHHYAVG 184
Cdd:COG1251  239 rpNTELARAAGLAVDrgivvddylrtSDPDIYAAG 273
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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