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Conserved domains on  [gi|985004842|gb|AMC98928|]
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2-deoxyglucose-6-phosphatase [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

hexitol phosphatase HxpB( domain architecture ID 10793483)

hexitol phosphatase HxpB is a sugar-phosphate phosphohydrolase that catalyzes the dephosphorylation of D-mannitol 1-phosphate and D-sorbitol 6-phosphate; also catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate (2dGlu6P)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK10826 PRK10826
hexitol phosphatase HxpB;
1-222 1.72e-159

hexitol phosphatase HxpB;


:

Pssm-ID: 236770 [Multi-domain]  Cd Length: 222  Bit Score: 439.77  E-value: 1.72e-159
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   1 MSTPRQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYARQPWNGPSRQEVVERVI 80
Cdd:PRK10826   1 MSTPRQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRREELPDTLGLRIDQVVDLWYARQPWNGPSRQEVVQRII 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  81 ARAISLVEETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAK 160
Cdd:PRK10826  81 ARVISLIEETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAK 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 985004842 161 LGVDPLTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLADVKLSSLTELTAKDLLG 222
Cdd:PRK10826 161 LGVDPLTCVALEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKLESLTELTAADLLG 222
 
Name Accession Description Interval E-value
PRK10826 PRK10826
hexitol phosphatase HxpB;
1-222 1.72e-159

hexitol phosphatase HxpB;


Pssm-ID: 236770 [Multi-domain]  Cd Length: 222  Bit Score: 439.77  E-value: 1.72e-159
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   1 MSTPRQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYARQPWNGPSRQEVVERVI 80
Cdd:PRK10826   1 MSTPRQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRREELPDTLGLRIDQVVDLWYARQPWNGPSRQEVVQRII 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  81 ARAISLVEETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAK 160
Cdd:PRK10826  81 ARVISLIEETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAK 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 985004842 161 LGVDPLTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLADVKLSSLTELTAKDLLG 222
Cdd:PRK10826 161 LGVDPLTCVALEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKLESLTELTAADLLG 222
YcjU COG0637
Beta-phosphoglucomutase, HAD superfamily [Carbohydrate transport and metabolism];
6-215 2.42e-64

Beta-phosphoglucomutase, HAD superfamily [Carbohydrate transport and metabolism];


Pssm-ID: 440402 [Multi-domain]  Cd Length: 208  Bit Score: 198.12  E-value: 2.42e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   6 QILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRrNELPDTLGLRIDMVVDLWYARQPWNgPSRQEVVERVIARAIS 85
Cdd:COG0637    1 MIKAVIFDMDGTLVDSEPLHARAWREAFAELGIDLTE-EEYRRLMGRSREDILRYLLEEYGLD-LPEEELAARKEELYRE 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  86 LVEETR-PLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVD 164
Cdd:COG0637   79 LLAEEGlPLIPGVVELLEALKEAGIKIAVATSSPRENAEAVLEAAGLLDYFDVIVTGDDVARGKPDPDIYLLAAERLGVD 158
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 985004842 165 PLTCVALEDSVNGMIASKAARMRSIVVPAPeAQNDPRFVLADVKLSSLTEL 215
Cdd:COG0637  159 PEECVVFEDSPAGIRAAKAAGMRVVGVPDG-GTAEEELAGADLVVDDLAEL 208
HAD_BPGM-like cd07505
beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase ...
9-192 9.33e-38

beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase superfamily; This family represents the beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. Family members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. It belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319808 [Multi-domain]  Cd Length: 143  Bit Score: 128.12  E-value: 9.33e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   9 AAIFDMDGLLIDSEPLWDRAELDvmaslgvdISRRNELPDTLglridmvvdlwyarqpwngpsrqevverviaraisLVE 88
Cdd:cd07505    1 AVIFDMDGVLIDTEPLHRQAWQL--------LERKNALLLEL-----------------------------------IAS 37
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  89 ETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVL-TMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLT 167
Cdd:cd07505   38 EGLKLKPGVVELLDALKAAGIPVAVATSSSRRNVELLLlELGLLRGYFDVIVSGDDVERGKPAPDIYLLAAERLGVDPER 117
                        170       180
                 ....*....|....*....|....*
gi 985004842 168 CVALEDSVNGMIASKAARMRSIVVP 192
Cdd:cd07505  118 CLVFEDSLAGIEAAKAAGMTVVAVP 142
Hydrolase pfam00702
haloacid dehalogenase-like hydrolase; This family is structurally different from the alpha ...
7-184 4.18e-26

haloacid dehalogenase-like hydrolase; This family is structurally different from the alpha/beta hydrolase family (pfam00561). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of Swiss:P24069. The rest of the fold is composed of the core alpha/beta domain. Those members with the characteriztic DxD triad at the N-terminus are probably phosphatidylglycerolphosphate (PGP) phosphatases involved in cardiolipin biosynthesis in the mitochondria.


Pssm-ID: 459910 [Multi-domain]  Cd Length: 191  Bit Score: 99.97  E-value: 4.18e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842    7 ILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYARQPWNG------------PSRQE 74
Cdd:pfam00702   1 IKAVVFDLDGTLTDGEPVVTEAIAELASEHPLAKAIVAAAEDLPIPVEDFTARLLLGKRDWLEeldilrglvetlEAEGL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   75 VVERVIARAISLVEETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVY 154
Cdd:pfam00702  81 TVVLVELLGVIALADELKLYPGAAEALKALKERGIKVAILTGDNPEAAEALLRLLGLDDYFDVVISGDDVGVGKPKPEIY 160
                         170       180       190
                  ....*....|....*....|....*....|
gi 985004842  155 LDCAAKLGVDPLTCVALEDSVNGMIASKAA 184
Cdd:pfam00702 161 LAALERLGVKPEEVLMVGDGVNDIPAAKAA 190
PGMB-YQAB-SF TIGR02009
beta-phosphoglucomutase family hydrolase; This subfamily model groups together three clades: ...
9-191 5.30e-24

beta-phosphoglucomutase family hydrolase; This subfamily model groups together three clades: the characterized beta-phosphoglucomutases (including those from E.coli, B.subtilus and L.lactis, TIGR01990), a clade of putative bPGM's from mycobacteria and a clade including the uncharacterized E.coli and H.influenzae yqaB genes which may prove to be beta-mutases of a related 1-phosphosugar. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).


Pssm-ID: 213673 [Multi-domain]  Cd Length: 185  Bit Score: 93.95  E-value: 5.30e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842    9 AAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRR-NELPDTLGlRIDMVVdlwYARQPWNGPSRQEVVERVIARAISLV 87
Cdd:TIGR02009   3 AVIFDMDGVITDTAPLHAQAWKHIAAKYGISFDKQyNESLKGLS-REDILR---AILKLRGDGLSLEEIHQLAERKNELY 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   88 EETRPL-----LPGVREAVALCKEQGLLVGLASASplHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLG 162
Cdd:TIGR02009  79 RELLRLtgvavLPGIRNLLKRLKAKGIAVGLGSSS--KNAPRILAKLGLRDYFDAIVDASEVKNGKPHPETFLLAAELLG 156
                         170       180
                  ....*....|....*....|....*....
gi 985004842  163 VDPLTCVALEDSVNGMIASKAARMRSIVV 191
Cdd:TIGR02009 157 VPPNECIVFEDALAGVQAARAAGMFAVAV 185
 
Name Accession Description Interval E-value
PRK10826 PRK10826
hexitol phosphatase HxpB;
1-222 1.72e-159

hexitol phosphatase HxpB;


Pssm-ID: 236770 [Multi-domain]  Cd Length: 222  Bit Score: 439.77  E-value: 1.72e-159
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   1 MSTPRQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYARQPWNGPSRQEVVERVI 80
Cdd:PRK10826   1 MSTPRQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRREELPDTLGLRIDQVVDLWYARQPWNGPSRQEVVQRII 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  81 ARAISLVEETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAK 160
Cdd:PRK10826  81 ARVISLIEETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAK 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 985004842 161 LGVDPLTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLADVKLSSLTELTAKDLLG 222
Cdd:PRK10826 161 LGVDPLTCVALEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKLESLTELTAADLLG 222
YcjU COG0637
Beta-phosphoglucomutase, HAD superfamily [Carbohydrate transport and metabolism];
6-215 2.42e-64

Beta-phosphoglucomutase, HAD superfamily [Carbohydrate transport and metabolism];


Pssm-ID: 440402 [Multi-domain]  Cd Length: 208  Bit Score: 198.12  E-value: 2.42e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   6 QILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRrNELPDTLGLRIDMVVDLWYARQPWNgPSRQEVVERVIARAIS 85
Cdd:COG0637    1 MIKAVIFDMDGTLVDSEPLHARAWREAFAELGIDLTE-EEYRRLMGRSREDILRYLLEEYGLD-LPEEELAARKEELYRE 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  86 LVEETR-PLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVD 164
Cdd:COG0637   79 LLAEEGlPLIPGVVELLEALKEAGIKIAVATSSPRENAEAVLEAAGLLDYFDVIVTGDDVARGKPDPDIYLLAAERLGVD 158
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 985004842 165 PLTCVALEDSVNGMIASKAARMRSIVVPAPeAQNDPRFVLADVKLSSLTEL 215
Cdd:COG0637  159 PEECVVFEDSPAGIRAAKAAGMRVVGVPDG-GTAEEELAGADLVVDDLAEL 208
HAD_BPGM-like cd07505
beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase ...
9-192 9.33e-38

beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase superfamily; This family represents the beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. Family members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. It belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319808 [Multi-domain]  Cd Length: 143  Bit Score: 128.12  E-value: 9.33e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   9 AAIFDMDGLLIDSEPLWDRAELDvmaslgvdISRRNELPDTLglridmvvdlwyarqpwngpsrqevverviaraisLVE 88
Cdd:cd07505    1 AVIFDMDGVLIDTEPLHRQAWQL--------LERKNALLLEL-----------------------------------IAS 37
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  89 ETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVL-TMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLT 167
Cdd:cd07505   38 EGLKLKPGVVELLDALKAAGIPVAVATSSSRRNVELLLlELGLLRGYFDVIVSGDDVERGKPAPDIYLLAAERLGVDPER 117
                        170       180
                 ....*....|....*....|....*
gi 985004842 168 CVALEDSVNGMIASKAARMRSIVVP 192
Cdd:cd07505  118 CLVFEDSLAGIEAAKAAGMTVVAVP 142
HAD_BPGM-like cd16423
uncharacterized subfamily of beta-phosphoglucomutase-like family, similar to uncharacterized ...
9-214 9.17e-36

uncharacterized subfamily of beta-phosphoglucomutase-like family, similar to uncharacterized Bacillus subtilis YhcW; This subfamily includes the uncharacterized Bacillus subtilis YhcW. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319859 [Multi-domain]  Cd Length: 169  Bit Score: 123.90  E-value: 9.17e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   9 AAIFDMDGLLIDSEPLWdraeldvmaslgvdisrrnelpdtlglridmvvdlWYARQPWNGPSRQEVVERVIARaislvE 88
Cdd:cd16423    1 AVIFDFDGVIVDTEPLW-----------------------------------YEAWQELLNERRNELIKRQFSE-----K 40
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  89 ETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTC 168
Cdd:cd16423   41 TDLPPIEGVKELLEFLKEKGIKLAVASSSPRRWIEPHLERLGLLDYFEVIVTGDDVEKSKPDPDLYLEAAERLGVNPEEC 120
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 985004842 169 VALEDSVNGMIASKAARMRSIVVPAPEAQNDPrFVLADVKLSSLTE 214
Cdd:cd16423  121 VVIEDSRNGVLAAKAAGMKCVGVPNPVTGSQD-FSKADLVLSSFAE 165
Gph COG0546
Phosphoglycolate phosphatase, HAD superfamily [Energy production and conversion];
9-217 1.55e-32

Phosphoglycolate phosphatase, HAD superfamily [Energy production and conversion];


Pssm-ID: 440312 [Multi-domain]  Cd Length: 214  Bit Score: 116.95  E-value: 1.55e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   9 AAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYARQPWngPSRQEVVERVIARAISLVE 88
Cdd:COG0546    3 LVLFDLDGTLVDSAPDIAAALNEALAELGLPPLDLEELRALIGLGLRELLRRLLGEDPD--EELEELLARFRELYEEELL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  89 ETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTC 168
Cdd:COG0546   81 DETRLFPGVRELLEALKARGIKLAVVTNKPREFAERLLEALGLDDYFDAIVGGDDVPPAKPKPEPLLEALERLGLDPEEV 160
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 985004842 169 VALEDSVNGMIASKAARMRSIVV-PAPEAQNDPRFVLADVKLSSLTELTA 217
Cdd:COG0546  161 LMVGDSPHDIEAARAAGVPFIGVtWGYGSAEELEAAGADYVIDSLAELLA 210
Hydrolase pfam00702
haloacid dehalogenase-like hydrolase; This family is structurally different from the alpha ...
7-184 4.18e-26

haloacid dehalogenase-like hydrolase; This family is structurally different from the alpha/beta hydrolase family (pfam00561). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of Swiss:P24069. The rest of the fold is composed of the core alpha/beta domain. Those members with the characteriztic DxD triad at the N-terminus are probably phosphatidylglycerolphosphate (PGP) phosphatases involved in cardiolipin biosynthesis in the mitochondria.


Pssm-ID: 459910 [Multi-domain]  Cd Length: 191  Bit Score: 99.97  E-value: 4.18e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842    7 ILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYARQPWNG------------PSRQE 74
Cdd:pfam00702   1 IKAVVFDLDGTLTDGEPVVTEAIAELASEHPLAKAIVAAAEDLPIPVEDFTARLLLGKRDWLEeldilrglvetlEAEGL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   75 VVERVIARAISLVEETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVY 154
Cdd:pfam00702  81 TVVLVELLGVIALADELKLYPGAAEALKALKERGIKVAILTGDNPEAAEALLRLLGLDDYFDVVISGDDVGVGKPKPEIY 160
                         170       180       190
                  ....*....|....*....|....*....|
gi 985004842  155 LDCAAKLGVDPLTCVALEDSVNGMIASKAA 184
Cdd:pfam00702 161 LAALERLGVKPEEVLMVGDGVNDIPAAKAA 190
PGMB-YQAB-SF TIGR02009
beta-phosphoglucomutase family hydrolase; This subfamily model groups together three clades: ...
9-191 5.30e-24

beta-phosphoglucomutase family hydrolase; This subfamily model groups together three clades: the characterized beta-phosphoglucomutases (including those from E.coli, B.subtilus and L.lactis, TIGR01990), a clade of putative bPGM's from mycobacteria and a clade including the uncharacterized E.coli and H.influenzae yqaB genes which may prove to be beta-mutases of a related 1-phosphosugar. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).


Pssm-ID: 213673 [Multi-domain]  Cd Length: 185  Bit Score: 93.95  E-value: 5.30e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842    9 AAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRR-NELPDTLGlRIDMVVdlwYARQPWNGPSRQEVVERVIARAISLV 87
Cdd:TIGR02009   3 AVIFDMDGVITDTAPLHAQAWKHIAAKYGISFDKQyNESLKGLS-REDILR---AILKLRGDGLSLEEIHQLAERKNELY 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   88 EETRPL-----LPGVREAVALCKEQGLLVGLASASplHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLG 162
Cdd:TIGR02009  79 RELLRLtgvavLPGIRNLLKRLKAKGIAVGLGSSS--KNAPRILAKLGLRDYFDAIVDASEVKNGKPHPETFLLAAELLG 156
                         170       180
                  ....*....|....*....|....*....
gi 985004842  163 VDPLTCVALEDSVNGMIASKAARMRSIVV 191
Cdd:TIGR02009 157 VPPNECIVFEDALAGVQAARAAGMFAVAV 185
HAD_2 pfam13419
Haloacid dehalogenase-like hydrolase;
11-191 1.12e-23

Haloacid dehalogenase-like hydrolase;


Pssm-ID: 404323 [Multi-domain]  Cd Length: 178  Bit Score: 93.03  E-value: 1.12e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   11 IFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDlWYARQPWNGPSRQEVVERVIARaisLVEET 90
Cdd:pfam13419   2 IFDFDGTLLDTEELIIKSFNYLLEEFGYGELSEEEILKFIGLPLREIFR-YLGVSEDEEEKIEFYLRKYNEE---LHDKL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   91 RPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVA 170
Cdd:pfam13419  78 VKPYPGIKELLEELKEQGYKLGIVTSKSRENVEEFLKQLGLEDYFDVIVGGDDVEGKKPDPDPILKALEQLGLKPEEVIY 157
                         170       180
                  ....*....|....*....|.
gi 985004842  171 LEDSVNGMIASKAARMRSIVV 191
Cdd:pfam13419 158 VGDSPRDIEAAKNAGIKVIAV 178
HAD-SF-IA-v3 TIGR01509
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; ...
9-191 3.54e-23

haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; This model represents part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The subfamilies are defined based on the location and the observed or predicted fold of a so-called "capping domain", or the absence of such a domain. Subfamily I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Subfamily II consists of sequences in which the capping domain is found between the second and third motifs. Subfamily III sequences have no capping domain in either of these positions. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that representing it with a single model is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms: (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only one of the variants each. Variant 3 (this model) is found in the enzymes beta-phosphoglucomutase (TIGR01990) and deoxyglucose-6-phosphatase, while many other enzymes of subfamily IA exhibit this variant as well as variant 1 (TIGR01549). These three variant models were created with the knowledge that there will be overlap among them - this is by design and serves the purpose of eliminating the overlap with models of more distantly related HAD subfamilies caused by an overly broad single model. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 273662 [Multi-domain]  Cd Length: 178  Bit Score: 91.71  E-value: 3.54e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842    9 AAIFDMDGLLIDSEPLwDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYARQPWngPSRQEVVERVIARAISLVE 88
Cdd:TIGR01509   1 AILFDLDGVLVDTEFA-IAKLINREELGLVPDELGVSAVGRLELALRRFKAQYGRTISP--EDAQLLYKQLFYEQIEEEA 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   89 ETRPLlPGVREAVALCKEQGLLVGLASASPLHMlEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTC 168
Cdd:TIGR01509  78 KLKPL-PGVRALLEALRARGKKLALLTNSPRAH-KLVLALLGLRDLFDVVIDSSDVGLGKPDPDIYLQALKALGLEPSEC 155
                         170       180
                  ....*....|....*....|...
gi 985004842  169 VALEDSVNGMIASKAARMRSIVV 191
Cdd:TIGR01509 156 VFVDDSPAGIEAAKAAGMHTVGV 178
HAD_CbbY-like cd07528
subfamily of beta-phosphoglucomutase-like family, similar to Rhodobacter sphaeroides ...
9-192 2.61e-21

subfamily of beta-phosphoglucomutase-like family, similar to Rhodobacter sphaeroides xylulose-1,5-bisphosphate phosphatase CbbY; This family includes Rhodobacter sphaeroides and Arabidopsis thaliana xylulose-1,5-bisphosphate phosphatase CbbY which convert xylulose-1,5-bisphosphate (a potent inhibitor of Ribulose-1,5-bisphosphate carboxylase/oxygenase, Rubisco), to the non-inhibitory compound xylulose-5-phosphate. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319830 [Multi-domain]  Cd Length: 199  Bit Score: 87.44  E-value: 2.61e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   9 AAIFDMDGLLIDSEPLWDRAELDVMASL-GVDISRRNELPDTL------GLRIDMvvdlWYARQPWnGPSRQEVVERVIA 81
Cdd:cd07528    1 ALIFDVDGTLAETEELHRRAFNNAFFAErGLDWYWDRELYGELlrvgggKERIAA----YFEKVGW-PESAPKDLKELIA 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  82 --------RAISLVEETR-PLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMF---DLRDSFDALASAEKLPYSKP 149
Cdd:cd07528   76 dlhkakteRYAELIAAGLlPLRPGVARLIDEAKAAGVRLAIATTTSPANVDALLSALlgpERRAIFDAIAAGDDVAEKKP 155
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 985004842 150 HPQVYLDCAAKLGVDPLTCVALEDSVNGMIASKAARMRSIVVP 192
Cdd:cd07528  156 DPDIYLLALERLGVSPSDCLAIEDSAIGLQAAKAAGLPCIVTP 198
YigB COG1011
FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily ...
7-217 4.22e-21

FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily (riboflavin biosynthesis) [Coenzyme transport and metabolism];


Pssm-ID: 440635 [Multi-domain]  Cd Length: 220  Bit Score: 87.39  E-value: 4.22e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   7 ILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISrrnelPDTLGLRIDMVVDLWYARQPWNGPSRQEVVERVIARA-IS 85
Cdd:COG1011    1 IKAVLFDLDGTLLDFDPVIAEALRALAERLGLLDE-----AEELAEAYRAIEYALWRRYERGEITFAELLRRLLEELgLD 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  86 LVEETR-----------PLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVY 154
Cdd:COG1011   76 LAEELAeaflaalpelvEPYPDALELLEALKARGYRLALLTNGSAELQEAKLRRLGLDDLFDAVVSSEEVGVRKPDPEIF 155
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 985004842 155 LDCAAKLGVDPLTCVALEDSVNG-MIASKAARMRSIVVpAPEAQNDPRFVLADVKLSSLTELTA 217
Cdd:COG1011  156 ELALERLGVPPEEALFVGDSPETdVAGARAAGMRTVWV-NRSGEPAPAEPRPDYVISDLAELLE 218
HAD_BPGM cd02598
beta-phosphoglucomutase, similar to Lactococcus lactis beta-phosphoglucomutase (beta-PGM); ...
72-221 8.08e-20

beta-phosphoglucomutase, similar to Lactococcus lactis beta-phosphoglucomutase (beta-PGM); Lactococcus lactis beta-PGM catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), forming beta-D-glucose 1,6-(bis)phosphate as an intermediate. In the forward G6P-forming direction, this reaction links polysaccharide phosphorolysis to glycolysis, in the reverse direction, the reaction provides G1P for the biosynthesis of exo-polysaccharides. This subfamily belongs to the beta-phosphoglucomutase-like family whose other members include Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319788 [Multi-domain]  Cd Length: 174  Bit Score: 82.73  E-value: 8.08e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  72 RQEVVERVIARAISLVEE--TRPLLPGVREAVALCKEQGLLVGLASASplHMLEKVLTMFDLRDSFDALASAEKLPYSKP 149
Cdd:cd02598   27 KEELAARKNRIYVELIEEltPVDVLPGIASLLVDLKAKGIKIALASAS--KNAPKILEKLGLAEYFDAIVDGAVLAKGKP 104
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 985004842 150 HPQVYLDCAAKLGVDPLTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPrfvlADVKLSSLTELTAKDLL 221
Cdd:cd02598  105 DPDIFLAAAEGLGLNPKDCIGVEDAQAGIRAIKAAGFLVVGVGREEDLLGA----DIVVPDTTADLTIEELL 172
HAD_ScGPP-like cd07527
subfamily of beta-phosphoglucomutase-like family, similar to Saccharomyces cerevisiae ...
9-218 4.93e-18

subfamily of beta-phosphoglucomutase-like family, similar to Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p); This subfamily includes Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p). GPP1p and GPP2p are involved in glycerol biosynthesis, GPP1 is induced in response to both anaerobic and hyperosmotic stress, GPP2 is induced in response to hyperosmotic or oxidative stress, and during diauxic shift; overexpression of DOG1 or DOG2 confers 2-deoxyglucose resistance. These belong to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319829 [Multi-domain]  Cd Length: 205  Bit Score: 78.92  E-value: 4.93e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   9 AAIFDMDGLLIDSEPLWDRAELDVMASLGVDIsrrNELPDTL-GLRIDMVVDLWYArqpwnGPSRQEVVERVIARAISLV 87
Cdd:cd07527    1 ALLFDMDGTLVDSTPAVERAWHKWAKEHGVDP---EEVLKVShGRRAIDVIRKLAP-----DDADIELVLALETEEPESY 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  88 EETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSfDALASAEKLPYSKPHPQVYLDCAAKLGVDPLT 167
Cdd:cd07527   73 PEGVIAIPGAVDLLASLPAAGDRWAIVTSGTRALAEARLEAAGLPHP-EVLVTADDVKNGKPDPEPYLLGAKLLGLDPSD 151
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 985004842 168 CVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLADVKLSSLTELTAK 218
Cdd:cd07527  152 CVVFEDAPAGIKAGKAAGARVVAVNTSHDLEQLEAAGADLVVEDLSDISVD 202
PLN02919 PLN02919
haloacid dehalogenase-like hydrolase family protein
5-191 9.00e-18

haloacid dehalogenase-like hydrolase family protein


Pssm-ID: 215497 [Multi-domain]  Cd Length: 1057  Bit Score: 81.44  E-value: 9.00e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842    5 RQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELP-------DTLGlridMVVDLWYARqpwnGPSRQEVVE 77
Cdd:PLN02919   73 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFVPfmgtgeaNFLG----GVASVKGVK----GFDPDAAKK 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   78 RVIAraISLVEETRPL----LPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDS-FDALASAEKLPYSKPHPQ 152
Cdd:PLN02919  145 RFFE--IYLEKYAKPNsgigFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSmFDAIVSADAFENLKPAPD 222
                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 985004842  153 VYLDCAAKLGVDPLTCVALEDSVNGMIASKAARMRSIVV 191
Cdd:PLN02919  223 IFLAAAKILGVPTSECVVIEDALAGVQAARAAGMRCIAV 261
HAD_BPGM_like cd07526
subfamily of beta-phosphoglucomutase-like family, similar to Escherichia coli ...
9-187 9.82e-18

subfamily of beta-phosphoglucomutase-like family, similar to Escherichia coli 6-phosphogluconate phosphatase YieH; This subfamily includes Escherichia coli YieH/HAD3 an 6-phosphogluconate phosphatase, which can hydrolyzed purines and pyrimidines as secondary substrates. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate, and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319828 [Multi-domain]  Cd Length: 141  Bit Score: 76.59  E-value: 9.82e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   9 AAIFDMDGLLIDSEPLWDRAELDVMASLGvdisrrnelpdtlglridmvvdlwyarqpwngpsrqevvERVIARAISlve 88
Cdd:cd07526    2 LVIFDCDGVLVDSEVIAARVLVEVLAELG---------------------------------------ARVLAAFEA--- 39
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  89 ETRPLlPGVREAVAlckEQGLLVGLASASPLHMLEKVLTMFDLRDSFDA-LASAEKLPYSKPHPQVYLDCAAKLGVDPLT 167
Cdd:cd07526   40 ELQPI-PGAAAALS---ALTLPFCVASNSSRERLTHSLGLAGLLAYFEGrIFSASDVGRGKPAPDLFLHAAAQMGVAPER 115
                        170       180
                 ....*....|....*....|
gi 985004842 168 CVALEDSVNGMIASKAARMR 187
Cdd:cd07526  116 CLVIEDSPTGVRAALAAGMT 135
HAD_like cd07533
uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily, similar ...
10-215 2.20e-17

uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily, similar to Parvibaculum lavamentivorans HAD-superfamily hydrolase, subfamily IA, variant 1; This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319835 [Multi-domain]  Cd Length: 207  Bit Score: 77.05  E-value: 2.20e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  10 AIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYarqPWNGPSRQEVVERVIARAISLV-- 87
Cdd:cd07533    2 VIFDWDGTLADSQHNIVAAMTAAFADLGLPVPSAAEVRSIIGLSLDEAIARLL---PMATPALVAVAERYKEAFDILRll 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  88 -EETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPySKPHPQVYLDCAAKLGVDPL 166
Cdd:cd07533   79 pEHAEPLFPGVREALDALAAQGVLLAVATGKSRRGLDRVLEQHGLGGYFDATRTADDTP-SKPHPEMLREILAELGVDPS 157
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 985004842 167 TCVALEDSVNGMIASKAARMRSIVVP-APEAQNDPRFVLADVKLSSLTEL 215
Cdd:cd07533  158 RAVMVGDTAYDMQMAANAGAHAVGVAwGYHSLEDLRSAGADAVVDHFSEL 207
PRK13222 PRK13222
N-acetylmuramic acid 6-phosphate phosphatase MupP;
2-217 4.45e-16

N-acetylmuramic acid 6-phosphate phosphatase MupP;


Pssm-ID: 237310 [Multi-domain]  Cd Length: 226  Bit Score: 74.08  E-value: 4.45e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   2 STPRQILAAIFDMDGLLIDSEPlwD--------RAELDvMASLGVDISRR---NelpdtlGLRIDMVVDLWYARQPWNGP 70
Cdd:PRK13222   1 MKFMDIRAVAFDLDGTLVDSAP--DlaaavnaaLAALG-LPPAGEERVRTwvgN------GADVLVERALTWAGREPDEE 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  71 SRQEVVERVIAR-AISLVEETRpLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKP 149
Cdd:PRK13222  72 LLEKLRELFDRHyAENVAGGSR-LYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIGGDSLPNKKP 150
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 985004842 150 HPQVYLDCAAKLGVDPLTCVALEDSVNGMIASKAARMRSIVV------PAPEAQNDPrfvlaDVKLSSLTELTA 217
Cdd:PRK13222 151 DPAPLLLACEKLGLDPEEMLFVGDSRNDIQAARAAGCPSVGVtygynyGEPIALSEP-----DVVIDHFAELLP 219
HAD_PGPase cd16417
Escherichia coli Gph phosphoglycolate phosphatase and related proteins; belongs to the ...
9-192 8.95e-15

Escherichia coli Gph phosphoglycolate phosphatase and related proteins; belongs to the haloacid dehalogenase-like superfamily; Phosphoglycolate phosphatase (PGP; EC 3.1.3.18) catalyzes the conversion of 2-phosphoglycolate into glycolate and phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319854 [Multi-domain]  Cd Length: 212  Bit Score: 70.34  E-value: 8.95e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   9 AAIFDMDGLLIDSEP-LWDRAELdVMASLGvdisrrneLPdtlGLRIDMVVDlwyarqpWNGPSRQEVVERVIARAIS-- 85
Cdd:cd16417    1 LVAFDLDGTLVDSAPdLAEAANA-MLAALG--------LP---PLPEETVRT-------WIGNGADVLVERALTGAREae 61
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  86 ----LVEETRPLL---------------PGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPY 146
Cdd:cd16417   62 pdeeLFKEARALFdrhyaetlsvhshlyPGVKEGLAALKAQGYPLACVTNKPERFVAPLLEALGISDYFSLVLGGDSLPE 141
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 985004842 147 SKPHPQVYLDCAAKLGVDPLTCVALEDSVNGMIASKAARMRSIVVP 192
Cdd:cd16417  142 KKPDPAPLLHACEKLGIAPAQMLMVGDSRNDILAARAAGCPSVGLT 187
PLN02940 PLN02940
riboflavin kinase
1-215 1.42e-14

riboflavin kinase


Pssm-ID: 178528 [Multi-domain]  Cd Length: 382  Bit Score: 71.40  E-value: 1.42e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   1 MSTP----RQILAAIFDMDGLLIDSEPLWDraelDVMASLGVDisrrnelpdtlglridmvvdlwYARQpWNGPSRQEVV 76
Cdd:PLN02940   1 MSAAkplkKLVSHVILDLDGTLLNTDGIVS----DVLKAFLVK----------------------YGKQ-WDGREAQKIV 53
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  77 ERVIARAISLVEETRPL------------------------LPGVREAVALCKEQGLLVGLASASPLHMLE-KVLTMFDL 131
Cdd:PLN02940  54 GKTPLEAAATVVEDYGLpcstdefnseitpllseqwcnikaLPGANRLIKHLKSHGVPMALASNSPRANIEaKISCHQGW 133
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842 132 RDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVALEDSVNGMIASKAARMRSIVVPAPEAQnDPRFVLADVKLSS 211
Cdd:PLN02940 134 KESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNCLVIEDSLPGVMAGKAAGMEVIAVPSIPKQ-THLYSSADEVINS 212

                 ....
gi 985004842 212 LTEL 215
Cdd:PLN02940 213 LLDL 216
PRK10725 PRK10725
fructose-1-phosphate/6-phosphogluconate phosphatase;
11-191 2.61e-14

fructose-1-phosphate/6-phosphogluconate phosphatase;


Pssm-ID: 182679 [Multi-domain]  Cd Length: 188  Bit Score: 68.56  E-value: 2.61e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  11 IFDMDGLLIDSEPLWDRAELDVMASLGV--DISRRNELPDTLGLRI-DMVVDLWYA-RQPwngpsRQEVVERVIARAISL 86
Cdd:PRK10725   9 IFDMDGTILDTEPTHRKAWREVLGRYGLqfDEQAMVALNGSPTWRIaQAIIELNQAdLDP-----HALAREKTEAVKSML 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  87 VEETRPLlPGVREAVALCKEQGLLVGLASASPlhMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPL 166
Cdd:PRK10725  84 LDSVEPL-PLIEVVKAWHGRRPMAVGTGSESA--IAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPT 160
                        170       180
                 ....*....|....*....|....*
gi 985004842 167 TCVALEDSVNGMIASKAARMRSIVV 191
Cdd:PRK10725 161 QCVVFEDADFGIQAARAAGMDAVDV 185
HAD_AtGPP-like cd07529
subfamily of beta-phosphoglucomutase-like family, similar to Arabidopsis thaliana Gpp1 and ...
7-192 2.93e-14

subfamily of beta-phosphoglucomutase-like family, similar to Arabidopsis thaliana Gpp1 and Gpp2; This subfamily includes Arabidopsis thaliana AtGpp1 and AtGpp2, and Drosophila GS1-like protein (Dmel\Gs1l) of unknown function. AtGpp1 and AtGpp2 are constitutively expressed in all the Arabidopsis tissues and unaffected under abiotic stress. Overexpression of AtGpp2 in transgenic Arabidopsis plants increases the specific DL-glycerol-3-phosphatase activity and improves the plants tolerance to salt, osmotic and oxidative stress. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319831 [Multi-domain]  Cd Length: 192  Bit Score: 68.53  E-value: 2.93e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   7 ILAAIFDMDGLLIDSE-----------------PLWDRAELdVMASLGVDISRRneLPDTLGlrIDMVVDLWYARQpwng 69
Cdd:cd07529    1 VTHCIFDMDGLLLDTEriytettqeilarygktYTWDVKAK-MMGRPASEAARI--IVDELK--LPMSLEEEFDEQ---- 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  70 psrQEVVERVIARAIslveetrPLLPGVREAVALCKEQGLLVGLASASplhmlekvltmfdLRDSFDALASAEKLPYS-- 147
Cdd:cd07529   72 ---QEALAELFMGTA-------KLMPGAERLLRHLHAHNIPIALATSS-------------CTRHFKLKTSRHKELFSlf 128
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 985004842 148 ---------------KPHPQVYLDCAAKLG---VDPLTCVALEDSVNGMIASKAARMRSIVVP 192
Cdd:cd07529  129 hhvvtgddpevkgrgKPAPDIFLVAAKRFNeppKDPSKCLVFEDSPNGVKAAKAAGMQVVMVP 191
HAD_PGPase cd07512
haloacid dehalogenase-like superfamily phosphoglycolate phosphatase, similar to Rhodobacter ...
9-216 5.52e-14

haloacid dehalogenase-like superfamily phosphoglycolate phosphatase, similar to Rhodobacter sphaeroides CbbZ; Phosphoglycolate phosphatase catalyzes the dephosphorylation of phosphoglycolate; its activity requires divalent cations, especially Mg++. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319815 [Multi-domain]  Cd Length: 214  Bit Score: 68.11  E-value: 5.52e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   9 AAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYARQ--PWNGPSRQEVVERVIARAISL 86
Cdd:cd07512    1 AVIFDLDGTLIDSAPDLHAALNAVLAAEGLAPLSLAEVRSFVGHGAPALIRRAFAAAgeDLDGPLHDALLARFLDHYEAD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  87 VEETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPL 166
Cdd:cd07512   81 PPGLTRPYPGVIEALERLRAAGWRLAICTNKPEAPARALLSALGLADLFAAVVGGDTLPQRKPDPAPLRAAIRRLGGDVS 160
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 985004842 167 TCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLADVKLSSLTELT 216
Cdd:cd07512  161 RALMVGDSETDAATARAAGVPFVLVTFGYRHAPVAELPHDAVFSDFDALP 210
PLN02779 PLN02779
haloacid dehalogenase-like hydrolase family protein
9-220 5.78e-14

haloacid dehalogenase-like hydrolase family protein


Pssm-ID: 215416 [Multi-domain]  Cd Length: 286  Bit Score: 68.97  E-value: 5.78e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   9 AAIFDMDGLLIDSEP-LWDRAELDVMASLGV-----DISRRNELPDTLGLRIDMVvdlWY-----------ARQPWNGPS 71
Cdd:PLN02779  42 ALLFDCDGVLVETERdGHRVAFNDAFKEFGLrpvewDVELYDELLNIGGGKERMT---WYfnengwptstiEKAPKDEEE 118
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  72 RQEVVERVIARA----ISLVEE-TRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVL-TMF--DLRDSFDALAsAEK 143
Cdd:PLN02779 119 RKELVDSLHDRKtelfKELIESgALPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVnTLLgpERAQGLDVFA-GDD 197
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 985004842 144 LPYSKPHPQVYLDCAAKLGVDPLTCVALEDSVNGMIASKAARMRSIVVPAPEAQnDPRFVLADVKLSSLTELTAKDL 220
Cdd:PLN02779 198 VPKKKPDPDIYNLAAETLGVDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSSYTA-DEDFSGADAVFDCLGDVPLEDF 273
HAD_like cd01427
Haloacid dehalogenase-like hydrolases; The haloacid dehalogenase-like (HAD) superfamily ...
97-191 4.63e-13

Haloacid dehalogenase-like hydrolases; The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others. This superfamily includes a variety of enzymes that catalyze the cleavage of substrate C-Cl, P-C, and P-OP bonds via nucleophilic substitution pathways. All of which use a nucleophilic aspartate in their phosphoryl transfer reaction. They catalyze nucleophilic substitution reactions at phosphorus or carbon centers, using a conserved Asp carboxylate in covalent catalysis. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319763 [Multi-domain]  Cd Length: 106  Bit Score: 63.18  E-value: 4.63e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  97 VREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVALEDSVN 176
Cdd:cd01427   12 AVELLKRLRAAGIKLAIVTNRSREALRALLEKLGLGDLFDGIIGSDGGGTPKPKPKPLLLLLLKLGVDPEEVLFVGDSEN 91
                         90
                 ....*....|....*
gi 985004842 177 GMIASKAARMRSIVV 191
Cdd:cd01427   92 DIEAARAAGGRTVAV 106
HAD-SF-IA-v1 TIGR01549
haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or ...
9-185 9.57e-13

haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; This model represents part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The subfamilies are defined based on the location and the observed or predicted fold of a so-called "capping domain", or the absence of such a domain. Subfamily I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Subfamily II consists of sequences in which the capping domain is found between the second and third motifs. Subfamily III sequences have no capping domain in either of these positions.The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that representing it with a single model is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms: (1) hhhhsDxxx(x)(D/E), (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only one of the variants each. Variant 1 (this model) is found in the enzymes phosphoglycolate phosphatase (TIGR01449) and enolase-phosphatase. These three variant models (see also TIGR01493 and TIGR01509) were created withthe knowledge that there will be overlap among them - this is by design and serves the purpose of eliminating the overlap with models of more distantly relatedHAD subfamilies caused by an overly broad single model. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 273686 [Multi-domain]  Cd Length: 164  Bit Score: 63.57  E-value: 9.57e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842    9 AAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLwyarqpwngpsRQEVVERVIARAISLVE 88
Cdd:TIGR01549   1 AILFDIDGTLVDIKFAIRRAFPQTFEEFGLDPASFKALKQAGGLAEEEWYRI-----------ATSALEELQGRFWSEYD 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   89 ETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKlPYSKPHPQVYLDCAAKLGVDPlTC 168
Cdd:TIGR01549  70 AEEAYIRGAADLLARLKSAGIKLGIISNGSLRAQKLLLRLFGLGDYFELILVSDE-PGSKPEPEIFLAALESLGVPP-EV 147
                         170
                  ....*....|....*..
gi 985004842  169 VALEDSVNGMIASKAAR 185
Cdd:TIGR01549 148 LHVGDNLNDIEGARNAG 164
PLN03243 PLN03243
haloacid dehalogenase-like hydrolase; Provisional
93-220 1.50e-12

haloacid dehalogenase-like hydrolase; Provisional


Pssm-ID: 215644 [Multi-domain]  Cd Length: 260  Bit Score: 65.05  E-value: 1.50e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  93 LLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVALE 172
Cdd:PLN03243 110 LRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCIVFG 189
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 985004842 173 DSVNGMIASKAARMRSIVVpapeAQNDPRFVL--ADVKLSSLTELTAKDL 220
Cdd:PLN03243 190 NSNSSVEAAHDGCMKCVAV----AGKHPVYELsaGDLVVRRLDDLSVVDL 235
HAD_PPase cd02616
pyrophosphatase similar to Bacillus subtilis PpaX; This family includes Bacillus subtilis PpaX ...
7-206 1.65e-09

pyrophosphatase similar to Bacillus subtilis PpaX; This family includes Bacillus subtilis PpaX which hydrolyzes pyrophosphate formed during serine-46-phosphorylated HPr (P-Ser-HPr) dephosphorylation by the bifunctional enzyme HPr kinase/phosphorylase. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319797 [Multi-domain]  Cd Length: 207  Bit Score: 55.75  E-value: 1.65e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   7 ILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELpdtlglridmvvdlwyarQPWNGPSRQEVVERVIA-RAIS 85
Cdd:cd02616    1 ITTILFDLDGTLIDTNELIIKSFNHTLKEYGLEGYTREEV------------------LPFIGPPLRETFEKIDPdKLED 62
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  86 LVEETRP-----------LLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVY 154
Cdd:cd02616   63 MVEEFRKyyrehnddltkEYPGVYETLARLKSQGIKLGVVTTKLRETALKGLKLLGLDKYFDVIVGGDDVTHHKPDPEPV 142
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 985004842 155 LDCAAKLGVDPLTCVALEDSVNGMIASKAARMRSIVV------PAPEAQNDPRFVLAD 206
Cdd:cd02616  143 LKALELLGAEPEEALMVGDSPHDILAGKNAGVKTVGVtwgykgREYLKAFNPDFIIDK 200
HAD_sEH-N_like cd02603
N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX ...
7-195 9.24e-09

N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive; This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319790 [Multi-domain]  Cd Length: 195  Bit Score: 53.12  E-value: 9.24e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   7 ILAAIFDMDGLLIDSEPLWDRAELDvmASLGVDISRRNELPDTLGLRIDMVVDLWYARQPWNGpSRQEVVERVIARAIS- 85
Cdd:cd02603    1 IRAVLFDFGGVLIDPDPAAAVARFE--ALTGEPSEFVLDTEGLAGAFLELERGRITEEEFWEE-LREELGRPLSAELFEe 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  86 LVEETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDS-FDAL--ASAEKLpySKPHPQVYLDCAAKLG 162
Cdd:cd02603   78 LVLAAVDPNPEMLDLLEALRAKGYKVYLLSNTWPDHFKFQLELLPRRGDlFDGVveSCRLGV--RKPDPEIYQLALERLG 155
                        170       180       190
                 ....*....|....*....|....*....|...
gi 985004842 163 VDPLTCVALEDSVNGMIASKAARMRSIVVPAPE 195
Cdd:cd02603  156 VKPEEVLFIDDREENVEAARALGIHAILVTDAE 188
PRK13226 PRK13226
phosphoglycolate phosphatase; Provisional
1-191 1.15e-08

phosphoglycolate phosphatase; Provisional


Pssm-ID: 237311 [Multi-domain]  Cd Length: 229  Bit Score: 53.32  E-value: 1.15e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   1 MSTPRQILaaiFDMDGLLIDSEPlwdraelDVMASLGVDISRRNELPDTLGLRIDMVVD-----LWYARQPWNGPSRQEV 75
Cdd:PRK13226   9 VRFPRAVL---FDLDGTLLDSAP-------DMLATVNAMLAARGRAPITLAQLRPVVSKgaramLAVAFPELDAAARDAL 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  76 VERVIARAISLVEETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYL 155
Cdd:PRK13226  79 IPEFLQRYEALIGTQSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLL 158
                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 985004842 156 DCAAKLGVDPLTCVALEDSVNGMIASKAARMRSIVV 191
Cdd:PRK13226 159 VAAERIGVAPTDCVYVGDDERDILAARAAGMPSVAA 194
PRK11587 PRK11587
putative phosphatase; Provisional
140-216 6.13e-08

putative phosphatase; Provisional


Pssm-ID: 183215 [Multi-domain]  Cd Length: 218  Bit Score: 51.15  E-value: 6.13e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 985004842 140 SAEKLPYSKPHPQVYLDCAAKLGVDPLTCVALEDSVNGMIASKAARMRSIVVPAPEaqNDPRFVLADVKLSSLTELT 216
Cdd:PRK11587 130 TAERVKRGKPEPDAYLLGAQLLGLAPQECVVVEDAPAGVLSGLAAGCHVIAVNAPA--DTPRLDEVDLVLHSLEQLT 204
HAD_L2-DEX cd02588
L-2-haloacid dehalogenase; L-2-Haloacid dehalogenase catalyzes the hydrolytic dehalogenation ...
9-215 2.75e-07

L-2-haloacid dehalogenase; L-2-Haloacid dehalogenase catalyzes the hydrolytic dehalogenation of L-2-haloacids to produce the corresponding D-2-hydroxyacids with an inversion of the C2-configuration. 2-haloacid dehalogenases are of interest for their potential to degrade recalcitrant halogenated environmental pollutants and their use in the synthesis of industrial chemicals. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319787 [Multi-domain]  Cd Length: 216  Bit Score: 49.19  E-value: 2.75e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   9 AAIFDMDGLLIDSEPLWDRAELDVmASLGVDIS---RRNELPDTLgLRIDMV--VDLWYARQpwngpsrqEVVERVIARA 83
Cdd:cd02588    2 ALVFDVYGTLIDWHSGLAAAERAF-PGRGEELSrlwRQKQLEYTW-LVTLMGpyVDFDELTR--------DALRATAAEL 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  84 -ISLVEETR----------PLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQ 152
Cdd:cd02588   72 gLELDESDLdelgdaylrlPPFPDVVAGLRRLREAGYRLAILSNGSPDLIEDVVANAGLRDLFDAVLSAEDVRAYKPAPA 151
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 985004842 153 VYLDCAAKLGVDPLTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLADVKLSSLTEL 215
Cdd:cd02588  152 VYELAAERLGVPPDEILHVASHAWDLAGARALGLRTAWINRPGEVPDPLGPAPDFVVPDLGEL 214
PRK13288 PRK13288
pyrophosphatase PpaX; Provisional
6-219 4.38e-07

pyrophosphatase PpaX; Provisional


Pssm-ID: 237336 [Multi-domain]  Cd Length: 214  Bit Score: 48.87  E-value: 4.38e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   6 QILAAIFDMDGLLIDSEPLwdraeldVMASLGVdisrrnelpdTLglriDMVVDLWYARQ---PWNGPSRQEV------- 75
Cdd:PRK13288   2 KINTVLFDLDGTLINTNEL-------IISSFLH----------TL----KTYYPNQYKREdvlPFIGPSLHDTfskides 60
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  76 -VERVIA--RAI------SLVEEtrplLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPY 146
Cdd:PRK13288  61 kVEEMITtyREFnhehhdELVTE----YETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITLDDVEH 136
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 985004842 147 SKPHPQVYLDCAAKLGVDPLTCVALEDSVNGMIASKAARMRSIVV------PAPEAQNDPRFVLAdvKLSSLTELTAKD 219
Cdd:PRK13288 137 AKPDPEPVLKALELLGAKPEEALMVGDNHHDILAGKNAGTKTAGVawtikgREYLEQYKPDFMLD--KMSDLLAIVGDM 213
PRK10563 PRK10563
6-phosphogluconate phosphatase; Provisional
6-186 6.21e-07

6-phosphogluconate phosphatase; Provisional


Pssm-ID: 182552 [Multi-domain]  Cd Length: 221  Bit Score: 48.54  E-value: 6.21e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   6 QILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYARQPWNGPsrQEVVERV----IA 81
Cdd:PRK10563   3 QIEAVFFDCDGTLVDSEVICSRAYVTMFAEFGITLSLEEVFKRFKGVKLYEIIDIISKEHGVTLA--KAELEPVyraeVA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  82 RaisLVEETRPLLPGVReavALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSF-DALASAEKLPYSKPHPQVYLDCAAK 160
Cdd:PRK10563  81 R---LFDSELEPIAGAN---ALLESITVPMCVVSNGPVSKMQHSLGKTGMLHYFpDKLFSGYDIQRWKPDPALMFHAAEA 154
                        170       180
                 ....*....|....*....|....*.
gi 985004842 161 LGVDPLTCVALEDSVNGMIASKAARM 186
Cdd:PRK10563 155 MNVNVENCILVDDSSAGAQSGIAAGM 180
HAD_dREG-2_like cd16415
uncharacterized family of the haloacid dehalogenase-like superfamily, similar to ...
97-210 1.36e-06

uncharacterized family of the haloacid dehalogenase-like superfamily, similar to uncharacterized Drosophila melanogaster rhythmically expressed gene 2 protein and human haloacid dehalogenase-like hydrolase domain-containing protein 3; The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319852 [Multi-domain]  Cd Length: 128  Bit Score: 46.13  E-value: 1.36e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  97 VREAVALCKEQGLLVGLAS-ASPLhmLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVALEDS- 174
Cdd:cd16415   12 AVETLKDLKEKGLKLAVVSnFDRR--LRELLEALGLDDYFDFVVFSYEVGYEKPDPRIFQKALERLGVSPEEALHVGDDl 89
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 985004842 175 VNGMIASKAARMRSIVVpapeAQNDPRFVLADVKLS 210
Cdd:cd16415   90 KNDYLGARAVGWHALLV----DREGALHELPSLANL 121
HAD_PHN cd02586
Phosphonoacetaldehyde hydrolase (phosphonatase); similar to Bacillus cereus phosphonatase; ...
85-191 1.89e-06

Phosphonoacetaldehyde hydrolase (phosphonatase); similar to Bacillus cereus phosphonatase; Degradation of the ubiquitous natural phosphonate 2-aminoethylphosphonate (AEP) into useable forms of nitrogen, carbon, and phosphorus is a two-step metabolic pathway. The first step, catalyzed by AEP transaminase, involves the transfer of NH3 from AEP to pyruvate, yielding phosphonoacetaldehyde (P-Ald) and alanine. In the second step, phosphonatase catalyzes the hydrolytic P-C bond cleavage of P-Ald to form orthophosphate and acetaldehyde. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319785 [Multi-domain]  Cd Length: 242  Bit Score: 47.29  E-value: 1.89e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  85 SLVEETRPLlPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRD-SFDALASAEKLPYSKPHPQVYLDCAAKLGV 163
Cdd:cd02586   92 SLAEYSSPI-PGVLEVIAKLRARGIKIGSTTGYTREMMDIVLPEAAAQGyRPDSLVTPDDVPAGRPYPWMCYKNAIELGV 170
                         90       100
                 ....*....|....*....|....*....
gi 985004842 164 DPL-TCVALEDSVNGMIASKAARMRSIVV 191
Cdd:cd02586  171 YDVaAVVKVGDTVPDIKEGLNAGMWTVGV 199
HAD_type_II TIGR01428
2-haloalkanoic acid dehalogenase, type II; Catalyzes the hydrolytic dehalogenation of small ...
7-165 2.29e-06

2-haloalkanoic acid dehalogenase, type II; Catalyzes the hydrolytic dehalogenation of small L-2-haloalkanoic acids to yield the corresponding D-2-hydroxyalkanoic acids. Belongs to the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), class (subfamily) I. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.


Pssm-ID: 130495 [Multi-domain]  Cd Length: 198  Bit Score: 46.56  E-value: 2.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842    7 ILAAIFDMDGLLIDSEPLWDRAElDVMASLGVDIS---RRNELPDTLGLRI-DMVVDLW--------YARQPWNGPSRQE 74
Cdd:TIGR01428   1 IKALVFDVYGTLFDVHSVAERAA-ELYGGRGEALSqlwRQKQLEYSWLRTLmGPYKDFWdltrealrYLLGRLGLEDDES 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   75 VVERVIARAISLveetrPLLPGVREAVALCKEQGL-LVGLASASPlHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQV 153
Cdd:TIGR01428  80 AADRLAEAYLRL-----PPHPDVPAGLRALKERGYrLAILSNGSP-AMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQV 153
                         170
                  ....*....|..
gi 985004842  154 YLDCAAKLGVDP 165
Cdd:TIGR01428 154 YQLALEALGVPP 165
HAD-SF-IB TIGR01488
Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like; This model ...
9-135 3.96e-06

Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like; This model represents a subfamily of the Haloacid Dehalogenase superfamily of aspartate-nucleophile hydrolases. Subfamily IA, B, C and D are distinguished from the rest of the superfamily by the presence of a variable domain between the first and second conserved catalytic motifs. In subfamilies IA and IB, this domain consists of an alpha-helical bundle. It was necessary to model these two subfamilies separately, breaking them at a an apparent phylogenetic bifurcation, so that the resulting model(s) are not so broadly defined that members of subfamily III (which lack the variable domain) are included. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 273653 [Multi-domain]  Cd Length: 177  Bit Score: 45.42  E-value: 3.96e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842    9 AAIFDMDGLLIDSEPLWDraELDVMASLGVdiSRRNELPDTLGLRI------DMVVDLWYarqpwngPSRQEVVERVIar 82
Cdd:TIGR01488   1 LAIFDFDGTLTRQDSLID--LLAKLLGTND--EVIELTRLAPSGRIsfedalGRRLALLH-------RSRSEEVAKEF-- 67
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 985004842   83 aislVEETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSF 135
Cdd:TIGR01488  68 ----LARQVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVF 116
Pyr-5-nucltdase TIGR01993
pyrimidine 5'-nucleotidase; This family of proteins includes the SDT1/SSM1 gene from yeast ...
102-191 6.73e-06

pyrimidine 5'-nucleotidase; This family of proteins includes the SDT1/SSM1 gene from yeast which has been shown to code for a pyrimidine (UMP/CMP) 5'nucleotidase. The family spans plants, fungi and a small number of bacteria. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).


Pssm-ID: 273917 [Multi-domain]  Cd Length: 183  Bit Score: 45.03  E-value: 6.73e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  102 ALCKEQGLLVGLASASPLHMlEKVLTMFDLRDSFDAL---ASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVALEDSVNGM 178
Cdd:TIGR01993  92 LLLRLPGRKIIFTNGDRAHA-RRALRRLGIEDCFDGIfcfDTANPDLLPKPSPQAYEKALREAGVDPERAIFFDDSARNI 170
                          90
                  ....*....|...
gi 985004842  179 IASKAARMRSIVV 191
Cdd:TIGR01993 171 AAGKALGMKTVLV 183
PLN02770 PLN02770
haloacid dehalogenase-like hydrolase family protein
9-186 8.76e-06

haloacid dehalogenase-like hydrolase family protein


Pssm-ID: 215413 [Multi-domain]  Cd Length: 248  Bit Score: 45.22  E-value: 8.76e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   9 AAIFDMDGLLIDSEPLWDRAELDVMASL----GVDISRRNELPDTLGLRIDMVVDLWYARQPWNGPSRQEVVERVIARAI 84
Cdd:PLN02770  24 AVLFDVDGTLCDSDPLHYYAFREMLQEInfngGVPITEEFFVENIAGKHNEDIALGLFPDDLERGLKFTDDKEALFRKLA 103
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  85 SlvEETRPLlPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVD 164
Cdd:PLN02770 104 S--EQLKPL-NGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVS 180
                        170       180
                 ....*....|....*....|..
gi 985004842 165 PLTCVALEDSVNGMIASKAARM 186
Cdd:PLN02770 181 KDHTFVFEDSVSGIKAGVAAGM 202
PRK13223 PRK13223
phosphoglycolate phosphatase; Provisional
4-209 1.21e-05

phosphoglycolate phosphatase; Provisional


Pssm-ID: 171912 [Multi-domain]  Cd Length: 272  Bit Score: 44.85  E-value: 1.21e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   4 PRQILaaiFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYARQPWNGPSRQEVVERVIA-- 81
Cdd:PRK13223  13 PRLVM---FDLDGTLVDSVPDLAAAVDRMLLELGRPPAGLEAVRHWVGNGAPVLVRRALAGSIDHDGVDDELAEQALAlf 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  82 -RAISLVEETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAK 160
Cdd:PRK13223  90 mEAYADSHELTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKM 169
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 985004842 161 LGVDPLTCVALEDSVNGMIASKAARMRSIVVP------APEAQNDPRFVLADVKL 209
Cdd:PRK13223 170 AGVPPSQSLFVGDSRSDVLAAKAAGVQCVALSygynhgRPIAEESPALVIDDLRA 224
HAD_5NT cd04302
haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065; ...
11-191 1.40e-05

haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065; 5'-nucleotidases dephosphorylate nucleoside 5'-monophosphates to nucleosides and inorganic phosphate. Purified Pseudomonas aeruginosa PA0065 displayed high activity toward 5'-UMP and 5'-IMP, significant activity against 5'-XMP and 5'-TMP, and low activity against 5'-CMP. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319798 [Multi-domain]  Cd Length: 209  Bit Score: 44.50  E-value: 1.40e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  11 IFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLG--LrIDMVVDLWyarqpwngPSRQEVVERVIA------R 82
Cdd:cd04302    3 LFDLDGTLTDSAEGITASVQYALEELGIPVPDESELRRFIGppL-EDSFRELL--------PFDEEEAQRAVDayreyyK 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  83 AISLVEETrpLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEkLPYSKPH-PQVYLDCAAKL 161
Cdd:cd04302   74 EKGLFENE--VYPGIPELLEKLKAAGYRLYVATSKPEVFARRILEHFGLDEYFDGIAGAS-LDGSRVHkADVIRYALDTL 150
                        170       180       190
                 ....*....|....*....|....*....|
gi 985004842 162 GVDPLTCVALEDSVNGMIASKAARMRSIVV 191
Cdd:cd04302  151 GIAPEQAVMIGDRKHDIIGARANGIDSIGV 180
PLN02575 PLN02575
haloacid dehalogenase-like hydrolase
96-220 2.53e-05

haloacid dehalogenase-like hydrolase


Pssm-ID: 215313 [Multi-domain]  Cd Length: 381  Bit Score: 44.47  E-value: 2.53e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  96 GVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVALEDSV 175
Cdd:PLN02575 220 GSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCIVFGNSN 299
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 985004842 176 NGMIASKAARMRSIVVpapeAQNDPRFVL--ADVKLSSLTELTAKDL 220
Cdd:PLN02575 300 QTVEAAHDARMKCVAV----ASKHPIYELgaADLVVRRLDELSIVDL 342
HAD_5NT cd02604
haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p ...
123-191 3.02e-05

haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p; This family includes Saccharomyces cerevisiae Phm8p (phosphate metabolism protein 8) and Sdt1p (Suppressor of disruption of TFIIS). Phm8p participates in the ribose salvage pathway, it catalyzes the dephosphorylation of nucleotide monophosphates to nucleosides, its preferred substrates are nucleotide monophosphates AMP, GMP, CMP, and UMP. Phm8p is also a lysophosphatidic acid phosphatase, dephosphorylating lysophosphatidic acids (LPAs) to monoacylglycerol in response to phosphate starvation. Sdt1p is a pyrimidine and pyridine-specific 5'-nucleotidase; it is an NMN/NaMN 5'-nucleotidases involved in the production of nicotinamide riboside and nicotinic acid riboside, and is a pyrimidine 5'-nucleotidase with high specificity for UMP and CMP. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319791 [Multi-domain]  Cd Length: 182  Bit Score: 43.01  E-value: 3.02e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842 123 EKVLTMFDLRDSFDALASAEKL-PYSKPHPQVYLDCAAKLGVDPLTCVALEDSVNGMIASKAARMRSIVV 191
Cdd:cd02604  111 IRVLKRLGLADLFDGIFDIEYAgPDPKPHPAAFEKAIREAGLDPKRAAFFDDSIRNLLAAKALGMKTVLV 180
PRK13478 PRK13478
phosphonoacetaldehyde hydrolase; Provisional
6-191 3.24e-05

phosphonoacetaldehyde hydrolase; Provisional


Pssm-ID: 184075 [Multi-domain]  Cd Length: 267  Bit Score: 43.70  E-value: 3.24e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   6 QILAAIFDMDGLLIDS---EPLwdRAELDVMASLGVDIS----RRnelPDTLG--------LRIDMVVDLWYAR--QPWN 68
Cdd:PRK13478   3 KIQAVIFDWAGTTVDFgsfAPT--QAFVEAFAQFGVEITleeaRG---PMGLGkwdhiralLKMPRVAARWQAVfgRLPT 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  69 GPSRQEVVERVIARAISLVEETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRD-SFDALASAEKLPYS 147
Cdd:PRK13478  78 EADVDALYAAFEPLQIAKLADYATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGyRPDHVVTTDDVPAG 157
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 985004842 148 KPHPQVYLDCAAKLGV-DPLTCVALEDSVNGMIASKAARMRSIVV 191
Cdd:PRK13478 158 RPYPWMALKNAIELGVyDVAACVKVDDTVPGIEEGLNAGMWTVGV 202
PLN02811 PLN02811
hydrolase
90-214 5.04e-05

hydrolase


Pssm-ID: 178407 [Multi-domain]  Cd Length: 220  Bit Score: 42.82  E-value: 5.04e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  90 TRPLLPGVREAVALCKEQGLLVGLASASPLHMLE----KVLTMFDLRDSFdALASAEKLPYSKPHPQVYLDCAAKL---G 162
Cdd:PLN02811  76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDlktqRHGELFSLMHHV-VTGDDPEVKQGKPAPDIFLAAARRFedgP 154
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 985004842 163 VDPLTCVALEDSVNGMIASKAARMRSIVVPapeaqnDPRFVL-----ADVKLSSLTE 214
Cdd:PLN02811 155 VDPGKVLVFEDAPSGVEAAKNAGMSVVMVP------DPRLDKsyckgADQVLSSLLD 205
HAD pfam12710
haloacid dehalogenase-like hydrolase;
10-126 4.45e-04

haloacid dehalogenase-like hydrolase;


Pssm-ID: 432733 [Multi-domain]  Cd Length: 188  Bit Score: 39.82  E-value: 4.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842   10 AIFDMDGLLIDSeplwdraelDVMASLGVDISRRNELPDTLGLRIDMVVDLWYARQPWNGPSRQEVVERVIARAISLVEE 89
Cdd:pfam12710   1 ALFDLDGTLLDG---------DSLFLLIRALLRRGGPDLWRALLVLLLLALLRLLGRLSRAGARELLRALLAGLPEEDAA 71
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 985004842   90 ----------TRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVL 126
Cdd:pfam12710  72 elerfvaevaLPRLHPGALELLAAHRAAGDRVVVVTGGLRPLVEPVL 118
HAD_Neu5Ac-Pase_like cd04305
human N-acetylneuraminate-9-phosphate phosphatase, Escherichia coli house-cleaning phosphatase ...
93-189 9.27e-03

human N-acetylneuraminate-9-phosphate phosphatase, Escherichia coli house-cleaning phosphatase YjjG, and related phosphatases; N-acetylneuraminate-9- phosphatase (Neu5Ac-9-Pase; E.C. 3.1.3.29) catalyzes the dephosphorylation of N-acylneuraminate 9-phosphate during the synthesis of N-acetylneuraminate; Escherichia coli nucleotide phosphatase YjjG has a broad pyrimidine nucleotide activity spectrum and functions as an in vivo house-cleaning phosphatase for noncanonical pyrimidine nucleotides. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319800 [Multi-domain]  Cd Length: 109  Bit Score: 34.83  E-value: 9.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985004842  93 LLPGVREAVALCKEqGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVALE 172
Cdd:cd04305   10 LLPGAKELLEELKK-GYKLGIITNGPTEVQWEKLEQLGIHKYFDHIVISEEVGVQKPNPEIFDYALNQLGVKPEETLMVG 88
                         90
                 ....*....|....*...
gi 985004842 173 DSV-NGMIASKAARMRSI 189
Cdd:cd04305   89 DSLeSDILGAKNAGIKTV 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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