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Conserved domains on  [gi|999851052|gb|AML02424|]
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hydrogenase-1 operon protein HyaF [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

hydrogenase expression/formation protein( domain architecture ID 10521603)

hydrogenase expression/formation protein belonging to the HupH/HyaF family is required for the synthesis of active [NiFe] hydrogenase

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HupH_C pfam04809
HupH hydrogenase expression protein, C-terminal conserved region; This family represents a ...
 166-272 1.27e-38

HupH hydrogenase expression protein, C-terminal conserved region; This family represents a C-terminal conserved region found in these bacterial proteins necessary for hydrogenase synthesis. Their precise function is unknown.


:

Pssm-ID: 428133  Cd Length: 109  Bit Score: 131.51  E-value: 1.27e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 999851052  166 NGLPLAHELLAHVRN--PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKG 243
Cdd:pfam04809   1 NAPALLAEIAEALAAlrPGGEPHVINLTLLPLTPEDLEFLDEVLGEGEVTILSRGYGNCRITETAVPGVWRVRYFNSEDK 80

                          90       100
                  ....*....|....*....|....*....
gi 999851052  244 PLLESYEICPIPEVVLAAPEDLVDSAQRL 272
Cdd:pfam04809  81 LILDTIEIADVPEVALAAPEDIADSAERL 109
 
Name Accession Description Interval E-value
HupH_C pfam04809
HupH hydrogenase expression protein, C-terminal conserved region; This family represents a ...
 166-272 1.27e-38

HupH hydrogenase expression protein, C-terminal conserved region; This family represents a C-terminal conserved region found in these bacterial proteins necessary for hydrogenase synthesis. Their precise function is unknown.


Pssm-ID: 428133  Cd Length: 109  Bit Score: 131.51  E-value: 1.27e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 999851052  166 NGLPLAHELLAHVRN--PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKG 243
Cdd:pfam04809   1 NAPALLAEIAEALAAlrPGGEPHVINLTLLPLTPEDLEFLDEVLGEGEVTILSRGYGNCRITETAVPGVWRVRYFNSEDK 80

                          90       100
                  ....*....|....*....|....*....
gi 999851052  244 PLLESYEICPIPEVVLAAPEDLVDSAQRL 272
Cdd:pfam04809  81 LILDTIEIADVPEVALAAPEDIADSAERL 109
 
Name Accession Description Interval E-value
HupH_C pfam04809
HupH hydrogenase expression protein, C-terminal conserved region; This family represents a ...
 166-272 1.27e-38

HupH hydrogenase expression protein, C-terminal conserved region; This family represents a C-terminal conserved region found in these bacterial proteins necessary for hydrogenase synthesis. Their precise function is unknown.


Pssm-ID: 428133  Cd Length: 109  Bit Score: 131.51  E-value: 1.27e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 999851052  166 NGLPLAHELLAHVRN--PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKG 243
Cdd:pfam04809   1 NAPALLAEIAEALAAlrPGGEPHVINLTLLPLTPEDLEFLDEVLGEGEVTILSRGYGNCRITETAVPGVWRVRYFNSEDK 80

                          90       100
                  ....*....|....*....|....*....
gi 999851052  244 PLLESYEICPIPEVVLAAPEDLVDSAQRL 272
Cdd:pfam04809  81 LILDTIEIADVPEVALAAPEDIADSAERL 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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