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Conserved domains on  [gi|1008890897|gb|AMR22567|]
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hypothetical protein A0259_07980 [Shigella sp. PAMC 28760]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
peri_YbiM_McbA NF040473
DUF1471 family periplasmic protein McbA; McbA (YbiM) is a member of the DUF1471 family found ...
 1-86 1.94e-48

DUF1471 family periplasmic protein McbA; McbA (YbiM) is a member of the DUF1471 family found in Escherichia coli K-12, where it is one of many paralogs, but not found in Salmonella enterica LT2. Many members of the DUF1471 family of small enterobacterial periplasmic proteins participate in response to various forms of stress, such as low pH.


:

Pssm-ID: 439700  Cd Length: 86  Bit Score: 148.20  E-value: 1.94e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008890897  1 MKKCLTLLIATVLSGISLTAYAAQPMSNLDSGQLRPAGTVSATGASNLSDLEDKLAEKAREQGAKGYVINSAGGNDQMFG 80
Cdd:NF040473   1 MKKCLTFLAATVLTGMSFAAFAAQPMSSPDTGQLRPAGTVSATGASNLSDLEDKLAEKAREQGAKGFVVNSAGGKNQMYG 80


                 ....*.
gi 1008890897 81 TATIYK 86
Cdd:NF040473  81 TATIYK 86
 
Name Accession Description Interval E-value
peri_YbiM_McbA NF040473
DUF1471 family periplasmic protein McbA; McbA (YbiM) is a member of the DUF1471 family found ...
 1-86 1.94e-48

DUF1471 family periplasmic protein McbA; McbA (YbiM) is a member of the DUF1471 family found in Escherichia coli K-12, where it is one of many paralogs, but not found in Salmonella enterica LT2. Many members of the DUF1471 family of small enterobacterial periplasmic proteins participate in response to various forms of stress, such as low pH.


Pssm-ID: 439700  Cd Length: 86  Bit Score: 148.20  E-value: 1.94e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008890897  1 MKKCLTLLIATVLSGISLTAYAAQPMSNLDSGQLRPAGTVSATGASNLSDLEDKLAEKAREQGAKGYVINSAGGNDQMFG 80
Cdd:NF040473   1 MKKCLTFLAATVLTGMSFAAFAAQPMSSPDTGQLRPAGTVSATGASNLSDLEDKLAEKAREQGAKGFVVNSAGGKNQMYG 80


                 ....*.
gi 1008890897 81 TATIYK 86
Cdd:NF040473  81 TATIYK 86
PRK10259 PRK10259
hypothetical protein; Provisional
 1-86 4.92e-17

hypothetical protein; Provisional


Pssm-ID: 137782  Cd Length: 86  Bit Score: 68.59  E-value: 4.92e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008890897  1 MKKCLTLLIATVLSGISLTAYAAQPMSNLDSGQLRPAGTVSATGASNLSDLEDKLAEKAREQGAKGYVINSAGGNDQMFG 80
Cdd:PRK10259   1 MKTINTVVAAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADGASTLDALEAKLAEKAAAAGASGYSITSATNNNKLSG 80


                 ....*.
gi 1008890897 81 TATIYK 86
Cdd:PRK10259  81 TAVIYK 86
YdgH_BhsA-like pfam07338
YdgH/BhsA/McbA-like domain; This domain is found in several Enterobacterial proteins of around ...
 34-85 6.53e-15

YdgH/BhsA/McbA-like domain; This domain is found in several Enterobacterial proteins of around 90 residues in length, including E. coli YdgH, YhcN, BhsA and McbA, which play a role in stress response, biofilm formation and pathogenesis. BhsA (also known as ComC) reduces the permeability of the outer membrane to copper and may decrease biofilm formation by repressing cell-cell interaction and cell surface interaction. Members of this entry have one copy of this domain with the exception of YdgH, which has three copies. The function of this domain is unknown, however, it is suggested to be directly involved in host-pathogen interaction.


Pssm-ID: 429417 [Multi-domain]  Cd Length: 55  Bit Score: 62.54  E-value: 6.53e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1008890897 34 LRPAGTVSATG-ASNLSDLEDKLAEKAREQGAKGYVINSAGG--NDQMFGTATIY 85
Cdd:pfam07338  1 LQPIGTVSVSGvFGSPSDAEAALSKKADAKGAKSYRIISADEpnGGNWHGTAELY 55
 
Name Accession Description Interval E-value
peri_YbiM_McbA NF040473
DUF1471 family periplasmic protein McbA; McbA (YbiM) is a member of the DUF1471 family found ...
 1-86 1.94e-48

DUF1471 family periplasmic protein McbA; McbA (YbiM) is a member of the DUF1471 family found in Escherichia coli K-12, where it is one of many paralogs, but not found in Salmonella enterica LT2. Many members of the DUF1471 family of small enterobacterial periplasmic proteins participate in response to various forms of stress, such as low pH.


Pssm-ID: 439700  Cd Length: 86  Bit Score: 148.20  E-value: 1.94e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008890897  1 MKKCLTLLIATVLSGISLTAYAAQPMSNLDSGQLRPAGTVSATGASNLSDLEDKLAEKAREQGAKGYVINSAGGNDQMFG 80
Cdd:NF040473   1 MKKCLTFLAATVLTGMSFAAFAAQPMSSPDTGQLRPAGTVSATGASNLSDLEDKLAEKAREQGAKGFVVNSAGGKNQMYG 80


                 ....*.
gi 1008890897 81 TATIYK 86
Cdd:NF040473  81 TATIYK 86
PRK10259 PRK10259
hypothetical protein; Provisional
 1-86 4.92e-17

hypothetical protein; Provisional


Pssm-ID: 137782  Cd Length: 86  Bit Score: 68.59  E-value: 4.92e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008890897  1 MKKCLTLLIATVLSGISLTAYAAQPMSNLDSGQLRPAGTVSATGASNLSDLEDKLAEKAREQGAKGYVINSAGGNDQMFG 80
Cdd:PRK10259   1 MKTINTVVAAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADGASTLDALEAKLAEKAAAAGASGYSITSATNNNKLSG 80


                 ....*.
gi 1008890897 81 TATIYK 86
Cdd:PRK10259  81 TAVIYK 86
YdgH_BhsA-like pfam07338
YdgH/BhsA/McbA-like domain; This domain is found in several Enterobacterial proteins of around ...
 34-85 6.53e-15

YdgH/BhsA/McbA-like domain; This domain is found in several Enterobacterial proteins of around 90 residues in length, including E. coli YdgH, YhcN, BhsA and McbA, which play a role in stress response, biofilm formation and pathogenesis. BhsA (also known as ComC) reduces the permeability of the outer membrane to copper and may decrease biofilm formation by repressing cell-cell interaction and cell surface interaction. Members of this entry have one copy of this domain with the exception of YdgH, which has three copies. The function of this domain is unknown, however, it is suggested to be directly involved in host-pathogen interaction.


Pssm-ID: 429417 [Multi-domain]  Cd Length: 55  Bit Score: 62.54  E-value: 6.53e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1008890897 34 LRPAGTVSATG-ASNLSDLEDKLAEKAREQGAKGYVINSAGG--NDQMFGTATIY 85
Cdd:pfam07338  1 LQPIGTVSVSGvFGSPSDAEAALSKKADAKGAKSYRIISADEpnGGNWHGTAELY 55
PRK09929 PRK09929
hypothetical protein; Provisional
 1-86 2.05e-08

hypothetical protein; Provisional


Pssm-ID: 182151  Cd Length: 91  Bit Score: 46.83  E-value: 2.05e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008890897  1 MKKCLTLLIATvLSGISLTAYAAQPMSNLD----SGQLRPAGTVSATGASNLSDLEDKLAEKAREQGAKGYVINSAGGND 76
Cdd:PRK09929   1 MKIISKMLLGA-LAFAVTNVYAAELMTKAEfekvESQYEKIGTISTSNEMSTADAKEDLIKKADEKGADVLVLTSGQTDN 79

                         90
                 ....*....|
gi 1008890897 77 QMFGTATIYK 86
Cdd:PRK09929  80 KIHGTADIYK 89
PRK14864 PRK14864
biofilm peroxide resistance protein BsmA;
1-86 1.10e-05

biofilm peroxide resistance protein BsmA;


Pssm-ID: 184866  Cd Length: 104  Bit Score: 40.02  E-value: 1.10e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008890897   1 MKKCLTLLIATVLSGISL---TAYA-------AQPMSNLDSGQLRPAGTVSATGASNLSDLEDKLAEKAREQGAKGYVIN 70
Cdd:PRK14864    5 MRRFASLLLTLLLSACSAlqgTPQPapppadhAQEIRRAQTQGLQKMGTVSALVRGSPDDAEREIQAKANAAGADYYVIV 84

                          90
                  ....*....|....*....
gi 1008890897  71 SAG---GNDQMFGTATIYK 86
Cdd:PRK14864   85 MVDetvVPGQWYSQAILYR 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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