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Conserved domains on  [gi|1039012563|gb|ANM62342|]
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Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 13325948)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

CATH:  1.25.40.10
Gene Ontology:  GO:0003723
PubMed:  19004664|23635770|25882680|34065603|18031283|30809817
SCOP:  4001344

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 387-668 3.02e-24

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 109.20  E-value: 3.02e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  387 DRVCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITYNVLVS 466
Cdd:PLN03218   471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  467 GLARNGHEEEVLEIYERMKAEG-P-KPNAVTNSVIIEGLCFARKVKEAEDFFSSLEQkcpenkaSFVKGYCEA------G 538
Cdd:PLN03218   551 ACGQSGAVDRAFDVLAEMKAEThPiDPDHITVGALMKACANAGQVDRAKEVYQMIHE-------YNIKGTPEVytiavnS 623

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  539 LSKKAYKAFVRLEYP--LRKSVYI-KLFFSLCIE-----GYLEKAHDVLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREA 610
Cdd:PLN03218   624 CSQKGDWDFALSIYDdmKKKGVKPdEVFFSALVDvaghaGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1039012563  611 QVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLL 668
Cdd:PLN03218   704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761
PLN03081 super family cl33631
pentatricopeptide (PPR) repeat-containing protein; Provisional
 153-521 2.17e-20

pentatricopeptide (PPR) repeat-containing protein; Provisional


The actual alignment was detected with superfamily member PLN03081:

Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 96.48  E-value: 2.17e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 153 VKAYVSLGMFDEATDvLFQSKRLDCVVDIKACNF--LMNRMTEFGKIGMLMTLFKQLKQLGLCANEYTYAIVVKALCRKG 230
Cdd:PLN03081   94 IEKLVACGRHREALE-LFEILEAGCPFTLPASTYdaLVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 231 NLEEAAMLL--IENESVFGYKTFINGLCVTGETEKAVALILELIDRkylAGDDLRAVLGMVVRGFCNEMKMKAAESVIIE 308
Cdd:PLN03081  173 MLIDARRLFdeMPERNLASWGTIIGGLVDAGNYREAFALFREMWED---GSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 309 MEEIGFGLDVYACLAVIDRYCKNMNLPEALGFLDKMLGKG-LKVNCVIVSLILQCYCKmdmclEALEKFKEFRDMNIFLD 387
Cdd:PLN03081  250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTtVAWNSMLAGYALHGYSE-----EALCLYYEMRDSGVSID 324

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 388 RVCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMigngmsP--DLITYNVLV 465
Cdd:PLN03081  325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM------PrkNLISWNALI 398

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1039012563 466 SGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKVKEAEDFFSSLEQ 521
Cdd:PLN03081  399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 708-756 3.19e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.83  E-value: 3.19e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1039012563 708 DVVCYTVLIDRQCKMNNLEQAAELFDRMIDSGLEPDMVAYTTLISSYFR 756
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 super family cl38385
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 742-776 6.44e-03

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


The actual alignment was detected with superfamily member pfam13041:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 35.42  E-value: 6.44e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1039012563 742 PDMVAYTTLISSYFRKGYIDMAVTLVTELSKK--------YNI 776
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRgvkpnvytYTI 43
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 387-668 3.02e-24

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 109.20  E-value: 3.02e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  387 DRVCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITYNVLVS 466
Cdd:PLN03218   471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  467 GLARNGHEEEVLEIYERMKAEG-P-KPNAVTNSVIIEGLCFARKVKEAEDFFSSLEQkcpenkaSFVKGYCEA------G 538
Cdd:PLN03218   551 ACGQSGAVDRAFDVLAEMKAEThPiDPDHITVGALMKACANAGQVDRAKEVYQMIHE-------YNIKGTPEVytiavnS 623

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  539 LSKKAYKAFVRLEYP--LRKSVYI-KLFFSLCIE-----GYLEKAHDVLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREA 610
Cdd:PLN03218   624 CSQKGDWDFALSIYDdmKKKGVKPdEVFFSALVDvaghaGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1039012563  611 QVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLL 668
Cdd:PLN03218   704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 153-521 2.17e-20

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 96.48  E-value: 2.17e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 153 VKAYVSLGMFDEATDvLFQSKRLDCVVDIKACNF--LMNRMTEFGKIGMLMTLFKQLKQLGLCANEYTYAIVVKALCRKG 230
Cdd:PLN03081   94 IEKLVACGRHREALE-LFEILEAGCPFTLPASTYdaLVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 231 NLEEAAMLL--IENESVFGYKTFINGLCVTGETEKAVALILELIDRkylAGDDLRAVLGMVVRGFCNEMKMKAAESVIIE 308
Cdd:PLN03081  173 MLIDARRLFdeMPERNLASWGTIIGGLVDAGNYREAFALFREMWED---GSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 309 MEEIGFGLDVYACLAVIDRYCKNMNLPEALGFLDKMLGKG-LKVNCVIVSLILQCYCKmdmclEALEKFKEFRDMNIFLD 387
Cdd:PLN03081  250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTtVAWNSMLAGYALHGYSE-----EALCLYYEMRDSGVSID 324

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 388 RVCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMigngmsP--DLITYNVLV 465
Cdd:PLN03081  325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM------PrkNLISWNALI 398

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1039012563 466 SGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKVKEAEDFFSSLEQ 521
Cdd:PLN03081  399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 624-669 6.48e-16

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 72.01  E-value: 6.48e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1039012563 624 PDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLD 669
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILIN 46
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 708-756 3.19e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.83  E-value: 3.19e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1039012563 708 DVVCYTVLIDRQCKMNNLEQAAELFDRMIDSGLEPDMVAYTTLISSYFR 756
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 627-661 2.05e-08

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 50.53  E-value: 2.05e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1039012563 627 FTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDV 661
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 710-743 5.87e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.52  E-value: 5.87e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1039012563 710 VCYTVLIDRQCKMNNLEQAAELFDRMIDSGLEPD 743
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 180-228 1.14e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 40.42  E-value: 1.14e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1039012563 180 DIKACNFLMNRMTEFGKIGMLMTLFKQLKQLGLCANEYTYAIVVKALCR 228
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 742-776 6.44e-03

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 35.42  E-value: 6.44e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1039012563 742 PDMVAYTTLISSYFRKGYIDMAVTLVTELSKK--------YNI 776
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRgvkpnvytYTI 43
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 387-668 3.02e-24

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 109.20  E-value: 3.02e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  387 DRVCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITYNVLVS 466
Cdd:PLN03218   471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  467 GLARNGHEEEVLEIYERMKAEG-P-KPNAVTNSVIIEGLCFARKVKEAEDFFSSLEQkcpenkaSFVKGYCEA------G 538
Cdd:PLN03218   551 ACGQSGAVDRAFDVLAEMKAEThPiDPDHITVGALMKACANAGQVDRAKEVYQMIHE-------YNIKGTPEVytiavnS 623

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  539 LSKKAYKAFVRLEYP--LRKSVYI-KLFFSLCIE-----GYLEKAHDVLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREA 610
Cdd:PLN03218   624 CSQKGDWDFALSIYDdmKKKGVKPdEVFFSALVDvaghaGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1039012563  611 QVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLL 668
Cdd:PLN03218   704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 404-772 1.53e-20

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 97.25  E-value: 1.53e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  404 VEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKvVDAL-DLIDEMIGNGMSPDLITYNVLVSGLARNGHEEEVLEIYE 482
Cdd:PLN03218   453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK-VDAMfEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  483 RMKAEGPKPNAVTnsviieglcfarkvkeaedfFSSLEQKCPENkasfvkgyceaglskkaykafvrleyplrksvyikl 562
Cdd:PLN03218   532 IMRSKNVKPDRVV--------------------FNALISACGQS------------------------------------ 555

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  563 ffslcieGYLEKAHDVLKKMSA--YRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTIMIHTYCRLN 640
Cdd:PLN03218   556 -------GAVDRAFDVLAEMKAetHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG 628

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  641 ELQKAESLFEDMKQRGIKPDVVTYTVLLDrylkldpehhetcsVQGEVGK-RKASEVLREFSAAGIGLDVVCY------- 712
Cdd:PLN03218   629 DWDFALSIYDDMKKKGVKPDEVFFSALVD--------------VAGHAGDlDKAFEILQDARKQGIKLGTVSYsslmgac 694

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  713 -----------------------TV-----LIDRQCKMNNLEQAAELFDRMIDSGLEPDMVAYTTLISSYFRKGYIDMAV 764
Cdd:PLN03218   695 snaknwkkalelyediksiklrpTVstmnaLITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL 774


                   ....*...
gi 1039012563  765 TLVTELSK 772
Cdd:PLN03218   775 DLLSQAKE 782
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 153-521 2.17e-20

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 96.48  E-value: 2.17e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 153 VKAYVSLGMFDEATDvLFQSKRLDCVVDIKACNF--LMNRMTEFGKIGMLMTLFKQLKQLGLCANEYTYAIVVKALCRKG 230
Cdd:PLN03081   94 IEKLVACGRHREALE-LFEILEAGCPFTLPASTYdaLVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 231 NLEEAAMLL--IENESVFGYKTFINGLCVTGETEKAVALILELIDRkylAGDDLRAVLGMVVRGFCNEMKMKAAESVIIE 308
Cdd:PLN03081  173 MLIDARRLFdeMPERNLASWGTIIGGLVDAGNYREAFALFREMWED---GSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 309 MEEIGFGLDVYACLAVIDRYCKNMNLPEALGFLDKMLGKG-LKVNCVIVSLILQCYCKmdmclEALEKFKEFRDMNIFLD 387
Cdd:PLN03081  250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTtVAWNSMLAGYALHGYSE-----EALCLYYEMRDSGVSID 324

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 388 RVCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMigngmsP--DLITYNVLV 465
Cdd:PLN03081  325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM------PrkNLISWNALI 398

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1039012563 466 SGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKVKEAEDFFSSLEQ 521
Cdd:PLN03081  399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 337-664 4.74e-18

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 89.17  E-value: 4.74e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  337 ALGFLDKMLGKGLKVNCVI-------------VSLILQCYCKM----------------DMCLEALEKFKEF------RD 381
Cdd:PLN03218   456 ALRVLRLVQEAGLKADCKLyttlistcaksgkVDAMFEVFHEMvnagveanvhtfgaliDGCARAGQVAKAFgaygimRS 535

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  382 MNIFLDRVCYNVAFDALSKLGRVEEAFELLQEMKDRG--IVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLI 459
Cdd:PLN03218   536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  460 TYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVtnsviieglcfarkvkeaedFFSSLEQKcpenkasfvkgyceAGL 539
Cdd:PLN03218   616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV--------------------FFSALVDV--------------AGH 661

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  540 SKKAYKAFVRLE------YPLRKSVYIKLFFSLCIEGYLEKAHDVLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREAQVL 613
Cdd:PLN03218   662 AGDLDKAFEILQdarkqgIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEV 741

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1039012563  614 FDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTY 664
Cdd:PLN03218   742 LSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMC 792
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 624-669 6.48e-16

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 72.01  E-value: 6.48e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1039012563 624 PDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLD 669
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILIN 46
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 421-470 1.26e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 65.46  E-value: 1.26e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1039012563 421 PDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITYNVLVSGLAR 470
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03077 PLN03077
Protein ECB2; Provisional
 313-776 2.30e-13

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 74.12  E-value: 2.30e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 313 GFGLDVYACLAVIDRYCKNMNLPEALGFLDKMLgkglKVNCVIVSLILQCYCKMDMCLEALEKFKEFRDMNIFLDRVCYN 392
Cdd:PLN03077  217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 393 VAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDAldlidEMIGNGM-SPDLITYNVLVSGLARN 471
Cdd:PLN03077  293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA-----EKVFSRMeTKDAVSWTAMISGYEKN 367

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 472 GHEEEVLEIYERMKAEGPKPNAVT-NSVIIEGLCFARKVKEAEdfFSSLEQKcpenkasfvkgyceAGLSKKAYKAFVRL 550
Cdd:PLN03077  368 GLPDKALETYALMEQDNVSPDEITiASVLSACACLGDLDVGVK--LHELAER--------------KGLISYVVVANALI 431

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 551 EyplrksVYIKlffSLCIEgyleKAHDVLKKMSAYRVEPGRSMcgkmIGAFCKLNNVREAQVLFDTMVERgLIPDLFTYT 630
Cdd:PLN03077  432 E------MYSK---CKCID----KALEVFHNIPEKDVISWTSI----IAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLI 493

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 631 IMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLDRYLKldpehhetCSvqgevgkrKASEVLREFSAAGigLDVV 710
Cdd:PLN03077  494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR--------CG--------RMNYAWNQFNSHE--KDVV 555

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039012563 711 CYTVLIDRQCKMNNLEQAAELFDRMIDSGLEPDMVAYTTLISSYFRKGYIDMAVTLVTELSKKYNI 776
Cdd:PLN03077  556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 389-434 2.31e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 65.08  E-value: 2.31e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1039012563 389 VCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYC 434
Cdd:pfam13041   4 VTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 195-507 6.17e-13

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 72.60  E-value: 6.17e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  195 GKIGMLMTLFKQLKQLGLCANEYTYAIVVKALCRKGNLEEA--AMLLIENESV----FGYKTFINGLCVTGETEKAVALI 268
Cdd:PLN03218   486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAfgAYGIMRSKNVkpdrVVFNALISACGQSGAVDRAFDVL 565

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  269 LEL------IDRKYLAgddlravLGMVVRGFCNEMKMKAAESVIIEMEEIGF--GLDVYAclAVIDRYCKNMNLPEALGF 340
Cdd:PLN03218   566 AEMkaethpIDPDHIT-------VGALMKACANAGQVDRAKEVYQMIHEYNIkgTPEVYT--IAVNSCSQKGDWDFALSI 636

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  341 LDKMLGKGLKVNCVIVSLILQCYCKMDMCLEALEKFKEFRDMNIFLDRVCYNVAFDALSKLGRVEEAFELLQEMKDRGIV 420
Cdd:PLN03218   637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  421 PDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVII 500
Cdd:PLN03218   717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796


                   ....*..
gi 1039012563  501 eGLCFAR 507
Cdd:PLN03218   797 -GLCLRR 802
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 597-638 3.08e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 58.91  E-value: 3.08e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1039012563 597 MIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTIMIHTYCR 638
Cdd:pfam13041   9 LINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 371-798 4.78e-11

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 66.43  E-value: 4.78e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 371 EALEKFKEFRDMNIF-LDRVCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEM 449
Cdd:PLN03081  105 EALELFEILEAGCPFtLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 450 igngmsPD--LITYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIE---GL----------CFARKVKEAED 514
Cdd:PLN03081  185 ------PErnLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRasaGLgsaragqqlhCCVLKTGVVGD 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 515 FFSSleqkCpenkaSFVKGYCEAGLSKKAYKAFVRLEyplRKSV--YIKLFFSLCIEGYLEKAHDVLKKMSAYRVEPGRS 592
Cdd:PLN03081  259 TFVS----C-----ALIDMYSKCGDIEDARCVFDGMP---EKTTvaWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 593 MCGKMIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRgikpDVVTYTVLLDRYl 672
Cdd:PLN03081  327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGY- 401

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 673 kldpehhetcsvqGEVGK-RKASEVLREFSAAGIGLDVVCYTVLIDrQCKMNNL-EQAAELFDRMI-DSGLEPDMVAYTT 749
Cdd:PLN03081  402 -------------GNHGRgTKAVEMFERMIAEGVAPNHVTFLAVLS-ACRYSGLsEQGWEIFQSMSeNHRIKPRAMHYAC 467

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*....
gi 1039012563 750 LISSYFRKGYIDMAVTLVTELSKKyniPSESFEAAVKSAALKAKRFQYG 798
Cdd:PLN03081  468 MIELLGREGLLDEAYAMIRRAPFK---PTVNMWAALLTACRIHKNLELG 513
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 456-504 2.45e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 56.22  E-value: 2.45e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1039012563 456 PDLITYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIEGLC 504
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 708-756 3.19e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.83  E-value: 3.19e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1039012563 708 DVVCYTVLIDRQCKMNNLEQAAELFDRMIDSGLEPDMVAYTTLISSYFR 756
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 417-449 9.49e-10

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 54.27  E-value: 9.49e-10
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1039012563 417 RGIVPDVINYTTLIDGYCLQGKVVDALDLIDEM 449
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 410-466 1.30e-09

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 54.67  E-value: 1.30e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1039012563 410 LLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITYNVLVS 466
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILG 58
PLN03077 PLN03077
Protein ECB2; Provisional
 529-758 3.69e-09

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 60.25  E-value: 3.69e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 529 SFVKGYCEAGLSKKAYK---AFVRLEYPLRKSVYIKLFfSLC------IEGylEKAHD-VLKKMSAYRVEPGRSMcgkmI 598
Cdd:PLN03077   56 SQLRALCSHGQLEQALKlleSMQELRVPVDEDAYVALF-RLCewkravEEG--SRVCSrALSSHPSLGVRLGNAM----L 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 599 GAFCKLNNVREAQVLFDTMVERglipDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLdrylkldpeh 678
Cdd:PLN03077  129 SMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL---------- 194

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 679 hETCSvqGEVGKRKASEVLREFSAAGIGLDVVCYTVLIDRQCKMNNLEQAAELFDRMIDSglepDMVAYTTLISSYFRKG 758
Cdd:PLN03077  195 -RTCG--GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENG 267
PLN03077 PLN03077
Protein ECB2; Provisional
 392-788 5.33e-09

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 59.86  E-value: 5.33e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 392 NVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLI----------DGYCLQGKVVDALDLIDEMIGNGM------- 454
Cdd:PLN03077   55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFrlcewkraveEGSRVCSRALSSHPSLGVRLGNAMlsmfvrf 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 455 --------------SPDLITYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTnsviieglcfarkvkeaedfFSSLE 520
Cdd:PLN03077  135 gelvhawyvfgkmpERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYT--------------------FPCVL 194

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 521 QKCpenkasfvKGYCEAGLSKKAYKAFVRLEYplrksvyiklffslciegylEKAHDVLKKMsayrvepgrsmcgkmIGA 600
Cdd:PLN03077  195 RTC--------GGIPDLARGREVHAHVVRFGF--------------------ELDVDVVNAL---------------ITM 231

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 601 FCKLNNVREAQVLFDTMVERglipDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLdrylkldpehhE 680
Cdd:PLN03077  232 YVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI-----------S 296

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 681 TCSVQGEVgkRKASEVLREFSAAGIGLDVVCYTVLIDRQCKMNNLEQAAELFDRMIDSglepDMVAYTTLISSYFRKGYI 760
Cdd:PLN03077  297 ACELLGDE--RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLP 370

                         410       420
                  ....*....|....*....|....*...
gi 1039012563 761 DMAVTLVTELSKKYNIPSESFEAAVKSA 788
Cdd:PLN03077  371 DKALETYALMEQDNVSPDEITIASVLSA 398
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 434-794 8.68e-09

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 59.12  E-value: 8.68e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  434 CLQGKVVDALDLIDEMIGNGMSPDLITYNVLVSGLARNGHEEEVLEIYE---RMKAEGPKPNAVTNSVIIEGlcfarKVK 510
Cdd:PLN03218   313 GLRKGVSSATNSLSLDKKNNGVKDAELPGQSSGQAASDVEEENSLAAYNggvSGKRKSPEYIDAYNRLLRDG-----RIK 387

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  511 EAEDFFSSLEQK-----CPENKASFVKGyCEAGLSKKAYKAFVRLEYPLRKSVYIKLFfSLC-----IEGYLEkahdVLK 580
Cdd:PLN03218   388 DCIDLLEDMEKRglldmDKIYHAKFFKA-CKKQRAVKEAFRFAKLIRNPTLSTFNMLM-SVCassqdIDGALR----VLR 461

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  581 KMSAYRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPD 660
Cdd:PLN03218   462 LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  661 VVTYTVLLDrylkldpehheTCSVQGEVgkRKASEVLREFSAAG--IGLDVVCYTVLIDRQCKMNNLEQAAELFDRMIDS 738
Cdd:PLN03218   542 RVVFNALIS-----------ACGQSGAV--DRAFDVLAEMKAEThpIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1039012563  739 GLEPDMVAYTTLISSYFRKGYIDMAVTLVTELSKKYNIPSESFEAAVKSAALKAKR 794
Cdd:PLN03218   609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664
PLN03077 PLN03077
Protein ECB2; Provisional
 140-515 1.07e-08

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 58.71  E-value: 1.07e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 140 KRSFVL-IRVSGALVKAYVSLGMFDEATDVLFQSKRLDCV---VDIKAC--NFLMNRMTEfgkigmlmtLFKQLKQLGLC 213
Cdd:PLN03077  316 KTGFAVdVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVswtAMISGYekNGLPDKALE---------TYALMEQDNVS 386

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 214 ANEYTYAIVVKALCRKGNLEEAAML--LIENESVFGYKTFINGLcvtgetekavalilelidrkylagddlravLGMVVR 291
Cdd:PLN03077  387 PDEITIASVLSACACLGDLDVGVKLheLAERKGLISYVVVANAL------------------------------IEMYSK 436

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 292 GFCNEmkmKAAEsVIIEMEEigfgLDVYACLAVIDRYCKNMNLPEALGFLDKMLGKgLKVNCVIVSLILQCYCKMDMCLE 371
Cdd:PLN03077  437 CKCID---KALE-VFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMC 507

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 372 ALEKFKEFRDMNIFLDRVCYNVAFDALSKLGRVEEAFELLQEMKDrgivpDVINYTTLIDGYCLQGKVVDALDLIDEMIG 451
Cdd:PLN03077  508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGSMAVELFNRMVE 582

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039012563 452 NGMSPDLITYNVLVSGLARNGHEEEVLEIYERMKAE-GPKPNAVTNSVIIEGLCFARKVKEAEDF 515
Cdd:PLN03077  583 SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKySITPNLKHYACVVDLLGRAGKLTEAYNF 647
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 612-671 1.45e-08

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 51.59  E-value: 1.45e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 612 VLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLDRY 671
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PLN03077 PLN03077
Protein ECB2; Provisional
 329-771 1.56e-08

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 58.32  E-value: 1.56e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 329 CKNMNLPEALGFLDKMLGKGLKVN-CVIVSLILQCYCK------MDMCLEALEKFKEF--RDMNIFLDrvcynvafdALS 399
Cdd:PLN03077   62 CSHGQLEQALKLLESMQELRVPVDeDAYVALFRLCEWKraveegSRVCSRALSSHPSLgvRLGNAMLS---------MFV 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 400 KLGRVEEAFELLQEMKDRgivpDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITY-NVL-----VSGLARnGH 473
Cdd:PLN03077  133 RFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFpCVLrtcggIPDLAR-GR 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 474 EEEVLEIYERMKAEGPKPNAVTNSVIIEGlcfarKVKEAEDFFSSLEQKCPENKASFVKGYCEAGLSKKAYKAFVRLeyp 553
Cdd:PLN03077  208 EVHAHVVRFGFELDVDVVNALITMYVKCG-----DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM--- 279

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 554 LRKSVYIKLFFSLCIEGYLEKAHDVL--KKMSAYRVEPGR----SMCGKMIGAFCKLNNVREAQVLFDTMVERglipDLF 627
Cdd:PLN03077  280 RELSVDPDLMTITSVISACELLGDERlgREMHGYVVKTGFavdvSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAV 355

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 628 TYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLdrylkldpehhETCSVQGEVGKrkaSEVLREFS-AAGIG 706
Cdd:PLN03077  356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL-----------SACACLGDLDV---GVKLHELAeRKGLI 421

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 707 LDVVCYTVLIDRQCKMNNLEQAAELFDRMIDSglepDMVAYTTLISS------------YFRKGYIDM---AVTLVTELS 771
Cdd:PLN03077  422 SYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGlrlnnrcfealiFFRQMLLTLkpnSVTLIAALS 497
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 627-661 2.05e-08

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 50.53  E-value: 2.05e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1039012563 627 FTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDV 661
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 620-653 4.52e-08

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 49.27  E-value: 4.52e-08
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1039012563 620 RGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMK 653
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 445-507 8.35e-08

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 49.66  E-value: 8.35e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039012563 445 LIDEMIGNGMSPDLITYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIeGLCFAR 507
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL-GVIGGR 63
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 429-770 1.65e-07

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 55.27  E-value: 1.65e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  429 LIDGYCLQGKVVDALDLIDEMIGNGMSPDLI-TYNVLVSGLARngheEEVLEIYE----RMKAEGP------KPNAVTNS 497
Cdd:PLN03218   247 SIAESLFTQTVLDSLDYDSYEYNGLLQEAAIsSGKGIFAESKR----EELYTFYEekqsRAKSSRLpnvkglRKGVSSAT 322

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  498 VIIEGLCFARKVKEAEDFFSSLEQKCPENKASFVKGYCEAGLSKKAYKAFvrleyplrksvYIKLFFSLCIEGYLEKAHD 577
Cdd:PLN03218   323 NSLSLDKKNNGVKDAELPGQSSGQAASDVEEENSLAAYNGGVSGKRKSPE-----------YIDAYNRLLRDGRIKDCID 391

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  578 VLKKMSayrvEPGRSMCGKMIGA----FCKLNNVREAQVLFDTMVergLIPDLFTYTIMIHTYCRLNELQKAESLFEDMK 653
Cdd:PLN03218   392 LLEDME----KRGLLDMDKIYHAkffkACKKQRAVKEAFRFAKLI---RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQ 464

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  654 QRGIKPDVVTYTVLLdrylkldpehhETCSVQGEVGKrkASEVLREFSAAGIGLDVVCYTVLIDRQCKMNNLEQAAELFD 733
Cdd:PLN03218   465 EAGLKADCKLYTTLI-----------STCAKSGKVDA--MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531

                          330       340       350
                   ....*....|....*....|....*....|....*..
gi 1039012563  734 RMIDSGLEPDMVAYTTLISSYFRKGYIDMAVTLVTEL 770
Cdd:PLN03218   532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM 568
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 391-773 1.93e-07

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 54.88  E-value: 1.93e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  391 YNVAFDALSKLGRVEEAFELLQEMKDRGIVP-DVINYTTLIDGYCLQGKVVDALDLIDEMigngMSPDLITYNVLVSGLA 469
Cdd:PLN03218   373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDmDKIYHAKFFKACKKQRAVKEAFRFAKLI----RNPTLSTFNMLMSVCA 448

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  470 RNGHEEEVLEIYERMKAEGPKPNAVtnsviieglcfarkvkeaedFFSSLEQKCPenkasfvkgyceaglskkaykafvr 549
Cdd:PLN03218   449 SSQDIDGALRVLRLVQEAGLKADCK--------------------LYTTLISTCA------------------------- 483

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  550 leyplrKSVYIKLFFslciegylekahDVLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMVERGLIPDLFTY 629
Cdd:PLN03218   484 ------KSGKVDAMF------------EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVF 545

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  630 TIMIHTYCRLNELQKAESLFEDMKQRG--IKPDVVTYTVLLdrylkldpehhETCSVQGEVGKrkASEVLREFSAAGIGL 707
Cdd:PLN03218   546 NALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALM-----------KACANAGQVDR--AKEVYQMIHEYNIKG 612

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039012563  708 DVVCYTVLIDRQCKMNNLEQAAELFDRMIDSGLEPDMVAYTTLISSYFRKGYIDMAVTLVTELSKK 773
Cdd:PLN03218   613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 389-423 3.69e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 47.06  E-value: 3.69e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1039012563 389 VCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDV 423
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 500-770 5.02e-06

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 50.25  E-value: 5.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 500 IEGLCFARKVKEAEDFFSSLEQKCPENkasfvkgyceagLSKKAYKAFVRLEYPLRKSVYIKlffslciegylekahDVL 579
Cdd:PLN03081   94 IEKLVACGRHREALELFEILEAGCPFT------------LPASTYDALVEACIALKSIRCVK---------------AVY 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 580 KKMSAYRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMVERglipDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKP 659
Cdd:PLN03081  147 WHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 660 DVVTYTVLLdrylkldpeHHETCSVQGEVGKRKASEVLRefsaAGIGLDVVCYTVLIDRQCKMNNLEQAAELFDRMIdsg 739
Cdd:PLN03081  223 EPRTFVVML---------RASAGLGSARAGQQLHCCVLK----TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--- 286

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1039012563 740 lEPDMVAYTTLISSYFRKGYIDMAVTLVTEL 770
Cdd:PLN03081  287 -EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 627-657 6.63e-06

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 43.22  E-value: 6.63e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1039012563 627 FTYTIMIHTYCRLNELQKAESLFEDMKQRGI 657
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 426-457 9.74e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.83  E-value: 9.74e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1039012563 426 YTTLIDGYCLQGKVVDALDLIDEMIGNGMSPD 457
Cdd:TIGR00756   3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 442-589 1.82e-05

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 46.62  E-value: 1.82e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 442 ALDLIDEMIGNGMSPDLITYNVLV-----SGLARNGHEEE----VLEIYERMKAEGPKPNAVTNSVIieglcfARKVKEA 512
Cdd:pfam17177  30 ALALYDAAKAEGVRLAQYHYNVLLylcskAADATDLKPQLaadrGFEVFEAMKAQGVSPNEATYTAV------ARLAAAK 103

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039012563 513 EDFfssleqkcpENKASFVKGYCEAGLSKKaykafvrleypLRKsvYIKLFFSLCIEGYLEKAHDVLKKMSAYRVEP 589
Cdd:pfam17177 104 GDG---------DLAFDLVKEMEAAGVSPR-----------LRS--YSPALHAYCEAGDADKAYEVEEHMLAHGVEL 158
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 459-493 2.38e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 41.67  E-value: 2.38e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1039012563 459 ITYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNA 493
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 389-419 2.57e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 41.68  E-value: 2.57e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1039012563 389 VCYNVAFDALSKLGRVEEAFELLQEMKDRGI 419
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PLN03077 PLN03077
Protein ECB2; Provisional
 293-522 5.69e-05

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 46.77  E-value: 5.69e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 293 FCNEM--------KMKAAESVIIEMEEigfgLDVYACLAVIDRYCKNMnLPE-ALGFLDKMLGKGLKVNCV-IVSLILQC 362
Cdd:PLN03077  325 VCNSLiqmylslgSWGEAEKVFSRMET----KDAVSWTAMISGYEKNG-LPDkALETYALMEQDNVSPDEItIASVLSAC 399

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 363 YC--KMDMCLEaLEKFKEFRDMNIFLdrVCYNVAFDALSKLGRVEEAFELLQEMKDRgivpDVINYTTLIDGYCLQGKVV 440
Cdd:PLN03077  400 AClgDLDVGVK-LHELAERKGLISYV--VVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCF 472

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 441 DALDLIDEMIG----------------------------------------------------------------NGMSP 456
Cdd:PLN03077  473 EALIFFRQMLLtlkpnsvtliaalsacarigalmcgkeihahvlrtgigfdgflpnalldlyvrcgrmnyawnqfNSHEK 552

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039012563 457 DLITYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKVKEAEDFFSSLEQK 522
Cdd:PLN03077  553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 710-743 5.87e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.52  E-value: 5.87e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1039012563 710 VCYTVLIDRQCKMNNLEQAAELFDRMIDSGLEPD 743
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 459-488 1.09e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 39.76  E-value: 1.09e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 1039012563 459 ITYNVLVSGLARNGHEEEVLEIYERMKAEG 488
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKG 30
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 180-228 1.14e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 40.42  E-value: 1.14e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1039012563 180 DIKACNFLMNRMTEFGKIGMLMTLFKQLKQLGLCANEYTYAIVVKALCR 228
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 426-454 1.50e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 39.37  E-value: 1.50e-04
                          10        20
                  ....*....|....*....|....*....
gi 1039012563 426 YTTLIDGYCLQGKVVDALDLIDEMIGNGM 454
Cdd:pfam01535   3 YNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 578-668 1.83e-04

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 43.54  E-value: 1.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563 578 VLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGI 657
Cdd:pfam17177  77 VFEAMKAQGVSPNEATYTAVARLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGV 156

                          90
                  ....*....|.
gi 1039012563 658 KPDVVTYTVLL 668
Cdd:pfam17177 157 ELEEPELAALL 167
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 452-485 2.06e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 39.25  E-value: 2.06e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1039012563 452 NGMSPDLITYNVLVSGLARNGHEEEVLEIYERMK 485
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 739-769 2.14e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 39.25  E-value: 2.14e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1039012563 739 GLEPDMVAYTTLISSYFRKGYIDMAVTLVTE 769
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDE 32
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 704-735 2.61e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 38.87  E-value: 2.61e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1039012563 704 GIGLDVVCYTVLIDRQCKMNNLEQAAELFDRM 735
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 211-241 3.11e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 38.48  E-value: 3.11e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1039012563 211 GLCANEYTYAIVVKALCRKGNLEEAAMLLIE 241
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDE 32
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 696-754 7.77e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 38.49  E-value: 7.77e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1039012563 696 VLREFSAAGIGLDVVCYTVLIDRQCKMNNLEQAAELFDRMIDSGLEPDMVAYTTLISSY 754
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 382-415 1.72e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 36.55  E-value: 1.72e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1039012563 382 MNIFLDRVCYNVAFDALSKLGRVEEAFELLQEMK 415
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 487-516 3.71e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 35.40  E-value: 3.71e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 1039012563 487 EGPKPNAVTNSVIIEGLCFARKVKEAEDFF 516
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELL 30
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 173-267 4.25e-03

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 40.63  E-value: 4.25e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012563  173 KRLDCVVDIKAC---------NFLMNRMTEFGKIGMLMTLFKQLKQLGLCANEYTYAIVVKALCRKGNLEEAAMLLIE-- 241
Cdd:PLN03218   702 KALELYEDIKSIklrptvstmNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQak 781

                           90       100
                   ....*....|....*....|....*....
gi 1039012563  242 NESV---FGYKTFINGLCVTgETEKAVAL 267
Cdd:PLN03218   782 EDGIkpnLVMCRCITGLCLR-RFEKACAL 809
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 710-740 6.23e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 34.75  E-value: 6.23e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1039012563 710 VCYTVLIDRQCKMNNLEQAAELFDRMIDSGL 740
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 742-776 6.44e-03

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 35.42  E-value: 6.44e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1039012563 742 PDMVAYTTLISSYFRKGYIDMAVTLVTELSKK--------YNI 776
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRgvkpnvytYTI 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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