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Conserved domains on  [gi|1039012968|gb|ANM62718|]
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Heat shock protein DnaJ with tetratricopeptide repeat-containing protein [Arabidopsis thaliana]

Protein Classification

J domain-containing protein( domain architecture ID 18414894)

J domain-containing protein with tetratricopeptide (TPR) repeats; similar to Homo sapiens DnaJ homolog subfamily C member 3 (DNAJC3) involved in the unfolded protein response (UPR) during endoplasmic reticulum (ER) stress

CATH:  1.10.287.110|1.25.40.10
Gene Ontology:  GO:0006457|GO:0005515|GO:0019901|GO:0004860|GO:0051787|GO:0051087
PubMed:  15170475|9644977|10517866|30708253|35729039|8016869|9585179|10542335
SCOP:  4000605|30708253

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 878-959 2.80e-18

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


:

Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 79.44  E-value: 2.80e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevHKGADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:pfam00226    1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPG-------------------DPEAEEKFKEINEAYEVLSDPEKRAI 61


                   ..
gi 1039012968  958 YE 959
Cdd:pfam00226   62 YD 63
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
450-556 5.40e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 63.87  E-value: 5.40e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  450 PDVCEVWRLRGNQAYKNGYMSKAEECYTHGINSSPSkdnseysvkpLALCYGNRAAARISLGRLREAISDCEMAASLDPS 529
Cdd:COG0457      5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD----------DAEALYNLGLAYLRLGRYEEALADYEQALELDPD 74

                           90       100
                   ....*....|....*....|....*..
gi 1039012968  530 YIKAYMRAANCHLVLGELGSAVQYFNK 556
Cdd:COG0457     75 DAEALNNLGLALQALGRYEEALEDYDK 101
3a0801s09 super family cl36792
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 709-827 1.28e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


The actual alignment was detected with superfamily member TIGR00990:

Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 61.92  E-value: 1.28e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  709 YTCNENQEECRESPASLVATISE--LLRYKNAGNEAVRDRKYMEAVEQYTAALSRNVDSrpfaaICFCNRAAANQALVQI 786
Cdd:TIGR00990  102 EPADELPEIDESSVANLSEEERKkyAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP-----VYYSNRAACHNALGDW 176

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1039012968  787 ADAIADCSLAMALDENYTKAVSRRATLHEMIRDYDQAASDL 827
Cdd:TIGR00990  177 EKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 454-706 2.27e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.42  E-value: 2.27e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  454 EVWRLRGNQAYKNGYMSKAEECYTHGINSSPskDNSEYSVKpLALCYgnraaarISLGRLREAISDCEMAASLDPSYIKA 533
Cdd:COG2956     43 EAHLALGNLYRRRGEYDRAIRIHQKLLERDP--DRAEALLE-LAQDY-------LKAGLLDRAEELLEKLLELDPDDAEA 112

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  534 YMRAANCHLVLGELGSAVQYFNKcmkstssvcLDRRTTIEAAEGLQQAQrvadftscasIFLEKRTPDGASDALvpiANA 613
Cdd:COG2956    113 LRLLAEIYEQEGDWEKAIEVLER---------LLKLGPENAHAYCELAE----------LYLEQGDYDEAIEAL---EKA 170

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  614 LSISSCSDKLLQMKAEALFMIRRYKEVIELCENTLQtAERNFVSAgiggttnVNGLGSTYHSlivwrwnkiskshfyLGN 693
Cdd:COG2956    171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALE-QDPDYLPA-------LPRLAELYEK---------------LGD 227

                          250
                   ....*....|...
gi 1039012968  694 LEKALDILEKLQQ 706
Cdd:COG2956    228 PEEALELLRKALE 240
 
Name Accession Description Interval E-value
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 878-959 2.80e-18

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 79.44  E-value: 2.80e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevHKGADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:pfam00226    1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPG-------------------DPEAEEKFKEINEAYEVLSDPEKRAI 61


                   ..
gi 1039012968  958 YE 959
Cdd:pfam00226   62 YD 63
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 878-999 3.01e-16

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 76.66  E-value: 3.01e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevHKGADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:COG0484      1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPG-------------------DPEAEEKFKEINEAYEVLSDPEKRAA 61

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 1039012968  958 Y-------ELEEEIRKARASRESYRSRKAAEASSPPYQTSRRYWKDSWR 999
Cdd:COG0484     62 YdrfghaaELLLATELAESAAAEAAAAEAKEEAAEAGASEYEAIAEEAS 110
DnaJ smart00271
DnaJ molecular chaperone homology domain;
878-954 8.33e-15

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 69.57  E-value: 8.33e-15
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039012968   878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQIlvrsesegpwlkeileevHKGADRLFKMIGEAYSVLSDPTK 954
Cdd:smart00271    2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD------------------KEEAEEKFKEINEAYEVLSDPEK 60
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 878-951 4.21e-14

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 67.57  E-value: 4.21e-14
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevHKGADRLFKMIGEAYSVLSD 951
Cdd:cd06257      1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPD-------------------DPEAEEKFKEINEAYEVLSD 55
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 878-958 1.92e-13

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 73.02  E-value: 1.92e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevhKGADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:TIGR02349    1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--------------------KEAEEKFKEINEAYEVLSDPEKRAQ 60


                   .
gi 1039012968  958 Y 958
Cdd:TIGR02349   61 Y 61
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 878-959 6.70e-13

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 71.42  E-value: 6.70e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAaqilvrsesegpwlKEileevhKGADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:PRK14298     6 DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKN--------------KE------PDAEEKFKEISEAYAVLSDAEKRAQ 65


                   ..
gi 1039012968  958 YE 959
Cdd:PRK14298    66 YD 67
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
450-556 5.40e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 63.87  E-value: 5.40e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  450 PDVCEVWRLRGNQAYKNGYMSKAEECYTHGINSSPSkdnseysvkpLALCYGNRAAARISLGRLREAISDCEMAASLDPS 529
Cdd:COG0457      5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD----------DAEALYNLGLAYLRLGRYEEALADYEQALELDPD 74

                           90       100
                   ....*....|....*....|....*..
gi 1039012968  530 YIKAYMRAANCHLVLGELGSAVQYFNK 556
Cdd:COG0457     75 DAEALNNLGLALQALGRYEEALEDYDK 101
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 709-827 1.28e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 61.92  E-value: 1.28e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  709 YTCNENQEECRESPASLVATISE--LLRYKNAGNEAVRDRKYMEAVEQYTAALSRNVDSrpfaaICFCNRAAANQALVQI 786
Cdd:TIGR00990  102 EPADELPEIDESSVANLSEEERKkyAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP-----VYYSNRAACHNALGDW 176

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1039012968  787 ADAIADCSLAMALDENYTKAVSRRATLHEMIRDYDQAASDL 827
Cdd:TIGR00990  177 EKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
681-916 2.02e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 59.25  E-value: 2.02e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  681 WNKISKSHFYLGNLEKALDILEKLQQVEytcnenqeecresPASLVAtisellrYKNAGNEAVRDRKYMEAVEQYTAALS 760
Cdd:COG0457     11 YNNLGLAYRRLGRYEEAIEDYEKALELD-------------PDDAEA-------LYNLGLAYLRLGRYEEALADYEQALE 70

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  761 RNVDSrpfaAICFCNRAAANQALVQIADAIADCSLAMALDENYTKAVSRRATLHEMIRDYDQAASDLQRLISIlvkqsdK 840
Cdd:COG0457     71 LDPDD----AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL------D 140

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039012968  841 TKTPETSVDRASSRKELKQARQRLSVMEEKSKEGIHLDFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQILVR 916
Cdd:COG0457    141 PDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 459-551 2.71e-06

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 51.14  E-value: 2.71e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  459 RGNQAYKNGYMSKAEECYTHGInsspskdnseySVKPLALCYGNRAAARISLGRLREAISDCEMAASLDPSYIKAYMRAA 538
Cdd:TIGR00990  133 KGNKAYRNKDFNKAIKLYSKAI-----------ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRA 201

                           90
                   ....*....|...
gi 1039012968  539 NCHLVLGELGSAV 551
Cdd:TIGR00990  202 NAYDGLGKYADAL 214
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 454-706 2.27e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.42  E-value: 2.27e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  454 EVWRLRGNQAYKNGYMSKAEECYTHGINSSPskDNSEYSVKpLALCYgnraaarISLGRLREAISDCEMAASLDPSYIKA 533
Cdd:COG2956     43 EAHLALGNLYRRRGEYDRAIRIHQKLLERDP--DRAEALLE-LAQDY-------LKAGLLDRAEELLEKLLELDPDDAEA 112

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  534 YMRAANCHLVLGELGSAVQYFNKcmkstssvcLDRRTTIEAAEGLQQAQrvadftscasIFLEKRTPDGASDALvpiANA 613
Cdd:COG2956    113 LRLLAEIYEQEGDWEKAIEVLER---------LLKLGPENAHAYCELAE----------LYLEQGDYDEAIEAL---EKA 170

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  614 LSISSCSDKLLQMKAEALFMIRRYKEVIELCENTLQtAERNFVSAgiggttnVNGLGSTYHSlivwrwnkiskshfyLGN 693
Cdd:COG2956    171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALE-QDPDYLPA-------LPRLAELYEK---------------LGD 227

                          250
                   ....*....|...
gi 1039012968  694 LEKALDILEKLQQ 706
Cdd:COG2956    228 PEEALELLRKALE 240
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 459-550 4.77e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 46.70  E-value: 4.77e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  459 RGNQAYKNGYMSKAEECYTHGINSSPSKdnseysvkplALCYGNRAAARISLGRLREAISDCEMAASLDPSYIKAYMRAA 538
Cdd:PLN03088     8 KAKEAFVDDDFALAVDLYTQAIDLDPNN----------AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKG 77

                           90
                   ....*....|..
gi 1039012968  539 NCHLVLGELGSA 550
Cdd:PLN03088    78 TACMKLEEYQTA 89
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 739-848 1.61e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 45.16  E-value: 1.61e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  739 GNEAVRDRKYMEAVEQYTAAlsrnVDSRPFAAICFCNRAAANQALVQIADAIADCSLAMALDENYTKAVSRRATLHEMIR 818
Cdd:PLN03088     9 AKEAFVDDDFALAVDLYTQA----IDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1039012968  819 DYDQAASDLQRLISI---------LVKQSDKTKTPETSV 848
Cdd:PLN03088    85 EYQTAKAALEKGASLapgdsrftkLIKECDEKIAEEEKD 123
TPR_1 pfam00515
Tetratricopeptide repeat;
497-530 1.61e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.02  E-value: 1.61e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1039012968  497 ALCYGNRAAARISLGRLREAISDCEMAASLDPSY 530
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 502-559 2.28e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 41.07  E-value: 2.28e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1039012968  502 NRAAARISLGRLREAISDCEMAASLDPSYIKAYMRAANCHLVLGELGSAVQYFNKCMK 559
Cdd:cd24142      5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIE 62
 
Name Accession Description Interval E-value
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 878-959 2.80e-18

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 79.44  E-value: 2.80e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevHKGADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:pfam00226    1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPG-------------------DPEAEEKFKEINEAYEVLSDPEKRAI 61


                   ..
gi 1039012968  958 YE 959
Cdd:pfam00226   62 YD 63
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 878-999 3.01e-16

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 76.66  E-value: 3.01e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevHKGADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:COG0484      1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPG-------------------DPEAEEKFKEINEAYEVLSDPEKRAA 61

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 1039012968  958 Y-------ELEEEIRKARASRESYRSRKAAEASSPPYQTSRRYWKDSWR 999
Cdd:COG0484     62 YdrfghaaELLLATELAESAAAEAAAAEAKEEAAEAGASEYEAIAEEAS 110
DnaJ smart00271
DnaJ molecular chaperone homology domain;
878-954 8.33e-15

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 69.57  E-value: 8.33e-15
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039012968   878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQIlvrsesegpwlkeileevHKGADRLFKMIGEAYSVLSDPTK 954
Cdd:smart00271    2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD------------------KEEAEEKFKEINEAYEVLSDPEK 60
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 878-951 4.21e-14

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 67.57  E-value: 4.21e-14
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevHKGADRLFKMIGEAYSVLSD 951
Cdd:cd06257      1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPD-------------------DPEAEEKFKEINEAYEVLSD 55
CbpA COG2214
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
878-983 1.48e-13

Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];


Pssm-ID: 441816 [Multi-domain]  Cd Length: 91  Bit Score: 67.05  E-value: 1.48e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKaaqilvrseseGPWLKEIleevhkgADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:COG2214      6 DHYAVLGVPPDASLEEIRQAYRRLAKLLHPDR-----------GGELKAL-------AEELFQRLNEAYEVLSDPERRAE 67

                           90       100
                   ....*....|....*....|....*.
gi 1039012968  958 YELeeEIRKARASRESYRSRKAAEAS 983
Cdd:COG2214     68 YDR--ELGQSGKGSASQPSAAAQRLA 91
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 878-958 1.92e-13

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 73.02  E-value: 1.92e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevhKGADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:TIGR02349    1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--------------------KEAEEKFKEINEAYEVLSDPEKRAQ 60


                   .
gi 1039012968  958 Y 958
Cdd:TIGR02349   61 Y 61
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 878-959 6.70e-13

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 71.42  E-value: 6.70e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAaqilvrsesegpwlKEileevhKGADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:PRK14298     6 DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKN--------------KE------PDAEEKFKEISEAYAVLSDAEKRAQ 65


                   ..
gi 1039012968  958 YE 959
Cdd:PRK14298    66 YD 67
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 878-958 3.13e-12

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 69.40  E-value: 3.13e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKaaqilvrseseGPWLKEileevhkgADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:PRK10767     5 DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDR-----------NPGDKE--------AEEKFKEIKEAYEVLSDPQKRAA 65


                   .
gi 1039012968  958 Y 958
Cdd:PRK10767    66 Y 66
PRK14280 PRK14280
molecular chaperone DnaJ;
878-959 1.16e-11

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 67.82  E-value: 1.16e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDkaaqilVRSESegpwlkeileevhkGADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:PRK14280     5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPD------INKEE--------------GADEKFKEISEAYEVLSDDQKRAQ 64


                   ..
gi 1039012968  958 YE 959
Cdd:PRK14280    65 YD 66
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
 877-959 1.19e-11

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 67.61  E-value: 1.19e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  877 LDFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevhKGADRLFKMIGEAYSVLSDPTKRS 956
Cdd:PRK14292     2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE--------------------KGAAEKFAQINEAYAVLSDAEKRA 61


                   ...
gi 1039012968  957 DYE 959
Cdd:PRK14292    62 HYD 64
SEC63 COG5407
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ...
 878-955 1.44e-11

Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 444165 [Multi-domain]  Cd Length: 61  Bit Score: 60.40  E-value: 1.44e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKaaqilvrsesegpwlkeilEEVHKGADRLFKMIGEAYSVLSDPTKR 955
Cdd:COG5407      1 DPYEVLGVAKTASADEIKKAYRKLAKKYHPDR-------------------NKGDPKAEERFKEINEAYELLSDAEKR 59
PRK14279 PRK14279
molecular chaperone DnaJ;
872-970 1.88e-11

molecular chaperone DnaJ;


Pssm-ID: 237655 [Multi-domain]  Cd Length: 392  Bit Score: 67.06  E-value: 1.88e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  872 KEGIHLDFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevHKGADRLFKMIGEAYSVLSD 951
Cdd:PRK14279     4 REWVEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPG-------------------DPAAEERFKAVSEAHDVLSD 64

                           90
                   ....*....|....*....
gi 1039012968  952 PTKRSDYeleEEIRKARAS 970
Cdd:PRK14279    65 PAKRKEY---DETRRLFAG 80
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 878-959 4.95e-11

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 65.56  E-value: 4.95e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKaaqilvrseseGPWLKEileevhkgADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:PRK14294     5 DYYEILGVTRDASEEEIKKSYRKLAMKYHPDR-----------NPGDKE--------AEELFKEAAEAYEVLSDPKKRGI 65


                   ..
gi 1039012968  958 YE 959
Cdd:PRK14294    66 YD 67
PRK14289 PRK14289
molecular chaperone DnaJ;
878-959 5.39e-11

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 65.62  E-value: 5.39e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKaaqilvrseseGPWLKEileevhkgADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:PRK14289     6 DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDK-----------NPGDKE--------AEEKFKEAAEAYDVLSDPDKRSR 66


                   ..
gi 1039012968  958 YE 959
Cdd:PRK14289    67 YD 68
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
450-556 5.40e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 63.87  E-value: 5.40e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  450 PDVCEVWRLRGNQAYKNGYMSKAEECYTHGINSSPSkdnseysvkpLALCYGNRAAARISLGRLREAISDCEMAASLDPS 529
Cdd:COG0457      5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD----------DAEALYNLGLAYLRLGRYEEALADYEQALELDPD 74

                           90       100
                   ....*....|....*....|....*..
gi 1039012968  530 YIKAYMRAANCHLVLGELGSAVQYFNK 556
Cdd:COG0457     75 DAEALNNLGLALQALGRYEEALEDYDK 101
PRK14295 PRK14295
molecular chaperone DnaJ;
871-959 6.88e-11

molecular chaperone DnaJ;


Pssm-ID: 237665 [Multi-domain]  Cd Length: 389  Bit Score: 65.26  E-value: 6.88e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  871 SKEGIHLDFFLIMGVKTSDSAADIKKAYRKAALRHHPDkaaqilvrsesegpwlkeileeVHKG---ADRLFKMIGEAYS 947
Cdd:PRK14295     3 TKDYIEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPD----------------------ANKGdakAEERFKEISEAYD 60

                           90
                   ....*....|..
gi 1039012968  948 VLSDPTKRSDYE 959
Cdd:PRK14295    61 VLSDEKKRKEYD 72
PRK14297 PRK14297
molecular chaperone DnaJ;
878-959 8.19e-11

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 65.19  E-value: 8.19e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevHKGADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:PRK14297     5 DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKG-------------------NKEAEEKFKEINEAYQVLSDPQKKAQ 65


                   ..
gi 1039012968  958 YE 959
Cdd:PRK14297    66 YD 67
PRK14277 PRK14277
chaperone protein DnaJ; Provisional
 878-959 1.43e-10

chaperone protein DnaJ; Provisional


Pssm-ID: 184599 [Multi-domain]  Cd Length: 386  Bit Score: 64.44  E-value: 1.43e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDkaaqilvrsesegpwlkeiLEEVHKGADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:PRK14277     6 DYYEILGVDRNATEEEIKKAYRRLAKKYHPD-------------------LNPGDKEAEQKFKEINEAYEILSDPQKRAQ 66


                   ..
gi 1039012968  958 YE 959
Cdd:PRK14277    67 YD 68
PRK14293 PRK14293
molecular chaperone DnaJ;
878-959 5.15e-10

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 62.70  E-value: 5.15e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDkaaqilvrsesegpwlkeileeVHK--GADRLFKMIGEAYSVLSDPTKR 955
Cdd:PRK14293     4 DYYEILGVSRDADKDELKRAYRRLARKYHPD----------------------VNKepGAEDRFKEINRAYEVLSDPETR 61


                   ....
gi 1039012968  956 SDYE 959
Cdd:PRK14293    62 ARYD 65
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
450-556 5.89e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 60.79  E-value: 5.89e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  450 PDVCEVWRLRGNQAYKNGYMSKAEECYTHGINSSPSkdnseysvkpLALCYGNRAAARISLGRLREAISDCEMAASLDPS 529
Cdd:COG0457     39 PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD----------DAEALNNLGLALQALGRYEEALEDYDKALELDPD 108

                           90       100
                   ....*....|....*....|....*..
gi 1039012968  530 YIKAYMRAANCHLVLGELGSAVQYFNK 556
Cdd:COG0457    109 DAEALYNLGLALLELGRYDEAIEAYER 135
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
 877-959 9.35e-10

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 61.78  E-value: 9.35e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  877 LDFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAqilvrSESEgpwlkeileevhkgADRLFKMIGEAYSVLSDPTKRS 956
Cdd:PRK14284     1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNP-----GDAE--------------AEKRFKEVSEAYEVLSDAQKRE 61


                   ...
gi 1039012968  957 DYE 959
Cdd:PRK14284    62 SYD 64
PRK14283 PRK14283
chaperone protein DnaJ; Provisional
 878-959 1.05e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 184604 [Multi-domain]  Cd Length: 378  Bit Score: 61.76  E-value: 1.05e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKaaqilvrSESEgpwlkeileevhkGADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:PRK14283     6 DYYEVLGVDRNADKKEIKKAYRKLARKYHPDV-------SEEE-------------GAEEKFKEISEAYAVLSDDEKRQR 65


                   ..
gi 1039012968  958 YE 959
Cdd:PRK14283    66 YD 67
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
 878-959 1.08e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 61.75  E-value: 1.08e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKaaqilvrseseGPWLKEileevhkgADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:PRK14281     4 DYYEVLGVSRSADKDEIKKAYRKLALKYHPDK-----------NPDNKE--------AEEHFKEVNEAYEVLSNDDKRRR 64


                   ..
gi 1039012968  958 YE 959
Cdd:PRK14281    65 YD 66
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 709-827 1.28e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 61.92  E-value: 1.28e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  709 YTCNENQEECRESPASLVATISE--LLRYKNAGNEAVRDRKYMEAVEQYTAALSRNVDSrpfaaICFCNRAAANQALVQI 786
Cdd:TIGR00990  102 EPADELPEIDESSVANLSEEERKkyAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP-----VYYSNRAACHNALGDW 176

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1039012968  787 ADAIADCSLAMALDENYTKAVSRRATLHEMIRDYDQAASDL 827
Cdd:TIGR00990  177 EKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217
PRK14299 PRK14299
chaperone protein DnaJ; Provisional
 878-959 1.84e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 237667 [Multi-domain]  Cd Length: 291  Bit Score: 59.95  E-value: 1.84e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDkaaqilvrsesegpwlkeileeVHK--GADRLFKMIGEAYSVLSDPTKR 955
Cdd:PRK14299     5 DYYAILGVPKNASQDEIKKAFKKLARKYHPD----------------------VNKspGAEEKFKEINEAYTVLSDPEKR 62


                   ....
gi 1039012968  956 SDYE 959
Cdd:PRK14299    63 RIYD 66
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
 878-959 1.89e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 60.87  E-value: 1.89e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDkaaqilVRSESegpwlkeileevhkGADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:PRK14276     5 EYYDRLGVSKDASQDEIKKAYRKLSKKYHPD------INKEP--------------GAEEKYKEVQEAYETLSDPQKRAA 64


                   ..
gi 1039012968  958 YE 959
Cdd:PRK14276    65 YD 66
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
681-916 2.02e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 59.25  E-value: 2.02e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  681 WNKISKSHFYLGNLEKALDILEKLQQVEytcnenqeecresPASLVAtisellrYKNAGNEAVRDRKYMEAVEQYTAALS 760
Cdd:COG0457     11 YNNLGLAYRRLGRYEEAIEDYEKALELD-------------PDDAEA-------LYNLGLAYLRLGRYEEALADYEQALE 70

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  761 RNVDSrpfaAICFCNRAAANQALVQIADAIADCSLAMALDENYTKAVSRRATLHEMIRDYDQAASDLQRLISIlvkqsdK 840
Cdd:COG0457     71 LDPDD----AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL------D 140

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039012968  841 TKTPETSVDRASSRKELKQARQRLSVMEEKSKEGIHLDFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQILVR 916
Cdd:COG0457    141 PDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216
PRK10266 PRK10266
curved DNA-binding protein;
878-959 2.27e-09

curved DNA-binding protein;


Pssm-ID: 182347 [Multi-domain]  Cd Length: 306  Bit Score: 59.83  E-value: 2.27e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDkaaqilVRSESEgpwlkeileevhkgADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:PRK10266     5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPD------VSKEPD--------------AEARFKEVAEAWEVLSDEQRRAE 64


                   ..
gi 1039012968  958 YE 959
Cdd:PRK10266    65 YD 66
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
496-709 2.53e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 58.86  E-value: 2.53e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  496 LALCYGNRAAARISLGRLREAISDCEMAASLDPSYIKAYMRAANCHLVLGELGSAVQYFNKcmkstssvcldrrtTIEAA 575
Cdd:COG0457      7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQ--------------ALELD 72

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  576 EGLQQAqrvadFTSCASIFLEKRTPDGASDALvpiANALSISSCSDKLLQMKAEALFMIRRYKEVIELCENTLQtAERNF 655
Cdd:COG0457     73 PDDAEA-----LNNLGLALQALGRYEEALEDY---DKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALE-LDPDD 143

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1039012968  656 VSAgiggttnvnglgstyhslivwrWNKISKSHFYLGNLEKALDILEKLQQVEY 709
Cdd:COG0457    144 ADA----------------------LYNLGIALEKLGRYEEALELLEKLEAAAL 175
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 878-959 2.90e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 60.17  E-value: 2.90e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevhKGADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:PRK14291     4 DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN--------------------PEAEEKFKEINEAYQVLSDPEKRKL 63


                   ..
gi 1039012968  958 YE 959
Cdd:PRK14291    64 YD 65
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
 876-959 9.85e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 58.60  E-value: 9.85e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  876 HLDFFLIMGVKTSDSAADIKKAYRKAALRHHPDKaaqilvrseseGPWLKEileevhkgADRLFKMIGEAYSVLSDPTKR 955
Cdd:PRK14301     3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDR-----------NPDNPE--------AEQKFKEAAEAYEVLRDAEKR 63


                   ....
gi 1039012968  956 SDYE 959
Cdd:PRK14301    64 ARYD 67
PTZ00037 PTZ00037
DnaJ_C chaperone protein; Provisional
 879-963 1.73e-08

DnaJ_C chaperone protein; Provisional


Pssm-ID: 240236 [Multi-domain]  Cd Length: 421  Bit Score: 57.91  E-value: 1.73e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  879 FFLIMGVKTSDSAADIKKAYRKAALRHHPDKAaqilvrsesegpwlkeileevhkGADRLFKMIGEAYSVLSDPTKRSDY 958
Cdd:PTZ00037    30 LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKG-----------------------GDPEKFKEISRAYEVLSDPEKRKIY 86


                   ....*.
gi 1039012968  959 -ELEEE 963
Cdd:PTZ00037    87 dEYGEE 92
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
450-556 2.06e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.17  E-value: 2.06e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  450 PDVCEVWRLRGNQAYKNGYMSKAEECYTHGINSSPSkdnseysvkpLALCYGNRAAARISLGRLREAISDCEMAASLDPS 529
Cdd:COG0457     73 PDDAEALNNLGLALQALGRYEEALEDYDKALELDPD----------DAEALYNLGLALLELGRYDEAIEAYERALELDPD 142

                           90       100
                   ....*....|....*....|....*..
gi 1039012968  530 YIKAYMRAANCHLVLGELGSAVQYFNK 556
Cdd:COG0457    143 DADALYNLGIALEKLGRYEEALELLEK 169
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
735-864 2.35e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 55.69  E-value: 2.35e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  735 YKNAGNEAVRDRKYMEAVEQYTAALSRNVDSrpfaAICFCNRAAANQALVQIADAIADCSLAMALDENYTKAVSRRATLH 814
Cdd:COG4785     76 YYERGVAYDSLGDYDLAIADFDQALELDPDL----AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIAL 151

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1039012968  815 EMIRDYDQAASDLQRLIsilvkqSDKTKTPETSVDR--ASSRKELKQARQRL 864
Cdd:COG4785    152 YYLGRYELAIADLEKAL------ELDPNDPERALWLylAERKLDPEKALALL 197
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 450-559 5.15e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 56.93  E-value: 5.15e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  450 PDVCEVWRLRGNQAYKNGYMSKAEECYTHGINSSPSkdnseysvkpLALCYGNRAAARISLGRLREAISDCEMAASLDPS 529
Cdd:COG3914    109 PDNAEALFNLGNLLLALGRLEEALAALRRALALNPD----------FAEAYLNLGEALRRLGRLEEAIAALRRALELDPD 178

                           90       100       110
                   ....*....|....*....|....*....|
gi 1039012968  530 YIKAYMRAANCHLVLGELGSAVQYFNKCMK 559
Cdd:COG3914    179 NAEALNNLGNALQDLGRLEEAIAAYRRALE 208
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 454-559 6.54e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 52.32  E-value: 6.54e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  454 EVWRLRGNQAYKNGYMSKAEECYTHGINSSPskDNSEYsvkplalcYGNRAAARISLGRLREAISDCEMAASLDPSYIKA 533
Cdd:COG4235     18 EGWLLLGRAYLRLGRYDEALAAYEKALRLDP--DNADA--------LLDLAEALLAAGDTEEAEELLERALALDPDNPEA 87

                           90       100
                   ....*....|....*....|....*.
gi 1039012968  534 YMRAANCHLVLGELGSAVQYFNKCMK 559
Cdd:COG4235     88 LYLLGLAAFQQGDYAEAIAAWQKLLA 113
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 454-559 6.79e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.50  E-value: 6.79e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  454 EVWRLRGNQAYKNGYMSKAEECYTHGINSSPskDNSEYsvkplalcYGNRAAARISLGRLREAISDCEMAASLDPSYIKA 533
Cdd:COG4783      5 EALYALAQALLLAGDYDEAEALLEKALELDP--DNPEA--------FALLGEILLQLGDLDEAIVLLHEALELDPDEPEA 74

                           90       100
                   ....*....|....*....|....*.
gi 1039012968  534 YMRAANCHLVLGELGSAVQYFNKCMK 559
Cdd:COG4783     75 RLNLGLALLKAGDYDEALALLEKALK 100
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
 878-959 1.10e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 55.32  E-value: 1.10e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKaaqilvrseseGPWLKEILEEVhkgadrlFKMIGEAYSVLSDPTKRSD 957
Cdd:PRK14290     4 DYYKILGVDRNASQEDIKKAFRELAKKWHPDL-----------HPGNKAEAEEK-------FKEISEAYEVLSDPQKRRQ 65


                   ..
gi 1039012968  958 YE 959
Cdd:PRK14290    66 YD 67
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
 878-960 1.12e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 55.06  E-value: 1.12e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDkaaqilVRSESEgpwlkeileevhkgADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:PRK14278     4 DYYGLLGVSRNASDAEIKRAYRKLARELHPD------VNPDEE--------------AQEKFKEISVAYEVLSDPEKRRI 63


                   ...
gi 1039012968  958 YEL 960
Cdd:PRK14278    64 VDL 66
PRK14300 PRK14300
chaperone protein DnaJ; Provisional
 878-959 1.27e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 172788 [Multi-domain]  Cd Length: 372  Bit Score: 55.02  E-value: 1.27e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevhKGADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:PRK14300     4 DYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA--------------------KDAEKKFKEINAAYDVLKDEQKRAA 63


                   ..
gi 1039012968  958 YE 959
Cdd:PRK14300    64 YD 65
PRK14286 PRK14286
chaperone protein DnaJ; Provisional
 879-959 1.41e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 172774 [Multi-domain]  Cd Length: 372  Bit Score: 55.00  E-value: 1.41e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  879 FFLIMGVKTSDSAADIKKAYRKAALRHHPDKaaqilvrseSEGpwlkeileevHKGADRLFKMIGEAYSVLSDPTKRSDY 958
Cdd:PRK14286     6 YYDILGVSKSANDEEIKSAYRKLAIKYHPDK---------NKG----------NKESEEKFKEATEAYEILRDPKKRQAY 66


                   .
gi 1039012968  959 E 959
Cdd:PRK14286    67 D 67
PRK14282 PRK14282
chaperone protein DnaJ; Provisional
 878-959 1.54e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 184603 [Multi-domain]  Cd Length: 369  Bit Score: 54.80  E-value: 1.54e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAqilvrsesegpwlkeileEVHKGADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:PRK14282     5 DYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHP------------------ENRKEAEQKFKEIQEAYEVLSDPQKRAM 66


                   ..
gi 1039012968  958 YE 959
Cdd:PRK14282    67 YD 68
PRK14285 PRK14285
chaperone protein DnaJ; Provisional
 878-959 1.56e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 172773 [Multi-domain]  Cd Length: 365  Bit Score: 54.61  E-value: 1.56e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKaaqilvrsesegpwlkeilEEVHKGADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:PRK14285     4 DYYEILGLSKGASKDEIKKAYRKIAIKYHPDK-------------------NKGNKEAESIFKEATEAYEVLIDDNKRAQ 64


                   ..
gi 1039012968  958 YE 959
Cdd:PRK14285    65 YD 66
DjlA COG1076
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
878-952 2.83e-07

DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440694 [Multi-domain]  Cd Length: 75  Bit Score: 48.64  E-value: 2.83e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQILvrSESEgpwlKEIleevhkgADRLFKMIGEAYSVLSDP 952
Cdd:COG1076      5 DAFELLGLPPDADDAELKRAYRKLQREHHPDRLAAGL--PEEE----QRL-------ALQKAAAINEAYETLKDP 66
PRK14287 PRK14287
chaperone protein DnaJ; Provisional
 878-959 2.99e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 237659 [Multi-domain]  Cd Length: 371  Bit Score: 53.86  E-value: 2.99e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDkaaqilVRSESEgpwlkeileevhkgADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:PRK14287     5 DYYEVLGVDRNASVDEVKKAYRKLARKYHPD------VNKAPD--------------AEDKFKEVKEAYDTLSDPQKKAH 64


                   ..
gi 1039012968  958 YE 959
Cdd:PRK14287    65 YD 66
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 450-559 3.52e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.58  E-value: 3.52e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  450 PDVCEVWRLRGNQAYKNGYMSKAEECYTHGINSSPskDNSEYsvkplalcYGNRAAARISLGRLREAISDCEMAASLDPS 529
Cdd:COG4783     35 PDNPEAFALLGEILLQLGDLDEAIVLLHEALELDP--DEPEA--------RLNLGLALLKAGDYDEALALLEKALKLDPE 104

                           90       100       110
                   ....*....|....*....|....*....|
gi 1039012968  530 YIKAYMRAANCHLVLGELGSAVQYFNKCMK 559
Cdd:COG4783    105 HPEAYLRLARAYRALGRPDEAIAALEKALE 134
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 495-833 8.28e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 51.65  E-value: 8.28e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  495 PLALCYGNRAAARISL--GRLREAISDCEMAASLDPSYIKAYMRAANCHLVLGELGSAVQYFNKcmkstssvcldrrtti 572
Cdd:COG2956      4 PVAAALGWYFKGLNYLlnGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQK---------------- 67

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  573 eaaeglqqaqrvadftscasifLEKRTPDgasdalvpianalsisscSDKLLQMKAEALFMIRRYKEVIELCENTLQTAE 652
Cdd:COG2956     68 ----------------------LLERDPD------------------RAEALLELAQDYLKAGLLDRAEELLEKLLELDP 107

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  653 RNFvsagiggttnvnglgSTYHSLIvwrwnkisKSHFYLGNLEKALDILEKLQQVeytcnenqeecreSPASLVAtisel 732
Cdd:COG2956    108 DDA---------------EALRLLA--------EIYEQEGDWEKAIEVLERLLKL-------------GPENAHA----- 146

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  733 lrYKNAGNEAVRDRKYMEAVEQYTAALSRNVDsrpfaaicfCNRAAANQALVQI-----ADAIADCSLAMALDENYTKAV 807
Cdd:COG2956    147 --YCELAELYLEQGDYDEAIEALEKALKLDPD---------CARALLLLAELYLeqgdyEEAIAALERALEQDPDYLPAL 215

                          330       340
                   ....*....|....*....|....*.
gi 1039012968  808 SRRATLHEMIRDYDQAASDLQRLISI 833
Cdd:COG2956    216 PRLAELYEKLGDPEEALELLRKALEL 241
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 454-585 8.90e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 51.65  E-value: 8.90e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  454 EVWRLRGNQAYKNGYMSKAEECYTHGINSSPskDNSEYSVkplalcygNRAAARISLGRLREAISDCEMAASLDPSYIKA 533
Cdd:COG2956    145 HAYCELAELYLEQGDYDEAIEALEKALKLDP--DCARALL--------LLAELYLEQGDYEEAIAALERALEQDPDYLPA 214

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1039012968  534 YMRAANCHLVLGELGSAVQYFNKCMKSTSSVCLDRRTT--IEAAEGLQQAQRVA 585
Cdd:COG2956    215 LPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALAdlLERKEGLEAALALL 268
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 459-551 2.71e-06

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 51.14  E-value: 2.71e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  459 RGNQAYKNGYMSKAEECYTHGInsspskdnseySVKPLALCYGNRAAARISLGRLREAISDCEMAASLDPSYIKAYMRAA 538
Cdd:TIGR00990  133 KGNKAYRNKDFNKAIKLYSKAI-----------ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRA 201

                           90
                   ....*....|...
gi 1039012968  539 NCHLVLGELGSAV 551
Cdd:TIGR00990  202 NAYDGLGKYADAL 214
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
496-556 2.84e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 49.53  E-value: 2.84e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039012968  496 LALCYGNRAAARISLGRLREAISDCEMAASLDPSYIKAYMRAANCHLVLGELGSAVQYFNK 556
Cdd:COG4785     72 LAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDR 132
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
463-563 3.02e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.32  E-value: 3.02e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  463 AYKNGYMSKAEECYTHGINSSPSkdnseysvkpLALCYGNRAAARISLGRLREAIsDCEMAASLDPSYIKAYMRAANCHL 542
Cdd:COG3063      2 YLKLGDLEEAEEYYEKALELDPD----------NADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLL 70

                           90       100
                   ....*....|....*....|.
gi 1039012968  543 VLGELGSAVQYFNKCMKSTSS 563
Cdd:COG3063     71 ELGDYDEALAYLERALELDPS 91
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 691-833 3.86e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 50.76  E-value: 3.86e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  691 LGNLEKALDILEKLQQVeytcnenqeecreSPASLVAtisellrYKNAGNEAVRDRKYMEAVEQYTAALSRNVDsrpFAA 770
Cdd:COG3914     91 LGRYEEALALYRRALAL-------------NPDNAEA-------LFNLGNLLLALGRLEEALAALRRALALNPD---FAE 147

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039012968  771 ICfCNRAAANQALVQIADAIADCSLAMALDENYTKAVSRRATLHEMIRDYDQAASDLQRLISI 833
Cdd:COG3914    148 AY-LNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALEL 209
djlA PRK09430
co-chaperone DjlA;
882-909 6.18e-06

co-chaperone DjlA;


Pssm-ID: 236512 [Multi-domain]  Cd Length: 267  Bit Score: 49.04  E-value: 6.18e-06
                           10        20
                   ....*....|....*....|....*...
gi 1039012968  882 IMGVKTSDSAADIKKAYRKAALRHHPDK 909
Cdd:PRK09430   205 VLGVSESDDDQEIKRAYRKLMSEHHPDK 232
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 463-560 7.80e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.88  E-value: 7.80e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  463 AYKNGYMSKAEECYTHGINSSPskDNSEYsvkplalcYGNRAAARISLGRLREAISDCEMAASLDPSYIKAYMRAANCHL 542
Cdd:COG5010     64 YNKLGDFEESLALLEQALQLDP--NNPEL--------YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLL 133

                           90
                   ....*....|....*...
gi 1039012968  543 VLGELGSAVQYFNKCMKS 560
Cdd:COG5010    134 SLGQDDEAKAALQRALGT 151
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 450-602 8.91e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 49.61  E-value: 8.91e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  450 PDVCEVWRLRGNQAYKNGYMSKAEECYTHGINSSPskDNSEYsvkplalcYGNRAAARISLGRLREAISDCEMAASLDPS 529
Cdd:COG3914    143 PDFAEAYLNLGEALRRLGRLEEAIAALRRALELDP--DNAEA--------LNNLGNALQDLGRLEEAIAAYRRALELDPD 212

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  530 YIKAY------MRAANCHLVLGELGSAVQYFNKCMKSTSSVCLDRRTTIEAAEGLQQAQRVADF-----TSCASIFLEKR 598
Cdd:COG3914    213 NADAHsnllfaLRQACDWEVYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALARAWAQLvaaaaAPELPPPPNPR 292


                   ....
gi 1039012968  599 TPDG 602
Cdd:COG3914    293 DPDR 296
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 678-833 1.12e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.95  E-value: 1.12e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  678 VWRWNKISKSHFYLGNLEKALDILEKLQqveytcnenqeecRESPASLVAtisellrYKNAGNEAVRDRKYMEAVEQYTA 757
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKAL-------------ELDPDNPEA-------FALLGEILLQLGDLDEAIVLLHE 63

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039012968  758 ALSRNVDSRPFAAicfcNRAAANQALVQIADAIADCSLAMALDENYTKAVSRRATLHEMIRDYDQAASDLQRLISI 833
Cdd:COG4783     64 ALELDPDEPEARL----NLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
450-559 1.33e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 47.60  E-value: 1.33e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  450 PDVCEVWRLRGNQAYKNGYMSKAEECYTHGINSSPSkdnseysvkpLALCYGNRAAARISLGRLREAISDCEMAASLDPS 529
Cdd:COG4785     70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPD----------LAEAYNNRGLAYLLLGDYDAALEDFDRALELDPD 139

                           90       100       110
                   ....*....|....*....|....*....|
gi 1039012968  530 YIKAYMRAANCHLVLGELGSAVQYFNKCMK 559
Cdd:COG4785    140 YAYAYLNRGIALYYLGRYELAIADLEKALE 169
PRK14288 PRK14288
molecular chaperone DnaJ;
875-959 1.60e-05

molecular chaperone DnaJ;


Pssm-ID: 172776 [Multi-domain]  Cd Length: 369  Bit Score: 48.53  E-value: 1.60e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  875 IHLDFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevHKGADRLFKMIGEAYSVLSDPTK 954
Cdd:PRK14288     1 MELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAG-------------------DKEAEEKFKLINEAYGVLSDEKK 61


                   ....*
gi 1039012968  955 RSDYE 959
Cdd:PRK14288    62 RALYD 66
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 454-706 2.27e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.42  E-value: 2.27e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  454 EVWRLRGNQAYKNGYMSKAEECYTHGINSSPskDNSEYSVKpLALCYgnraaarISLGRLREAISDCEMAASLDPSYIKA 533
Cdd:COG2956     43 EAHLALGNLYRRRGEYDRAIRIHQKLLERDP--DRAEALLE-LAQDY-------LKAGLLDRAEELLEKLLELDPDDAEA 112

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  534 YMRAANCHLVLGELGSAVQYFNKcmkstssvcLDRRTTIEAAEGLQQAQrvadftscasIFLEKRTPDGASDALvpiANA 613
Cdd:COG2956    113 LRLLAEIYEQEGDWEKAIEVLER---------LLKLGPENAHAYCELAE----------LYLEQGDYDEAIEAL---EKA 170

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  614 LSISSCSDKLLQMKAEALFMIRRYKEVIELCENTLQtAERNFVSAgiggttnVNGLGSTYHSlivwrwnkiskshfyLGN 693
Cdd:COG2956    171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALE-QDPDYLPA-------LPRLAELYEK---------------LGD 227

                          250
                   ....*....|...
gi 1039012968  694 LEKALDILEKLQQ 706
Cdd:COG2956    228 PEEALELLRKALE 240
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
770-833 3.39e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 46.54  E-value: 3.39e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039012968  770 AICFCNRAAANQALVQIADAIADCSLAMALDENYTKAVSRRATLHEMIRDYDQAASDLQRLISI 833
Cdd:COG0457      8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL 71
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 459-550 4.77e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 46.70  E-value: 4.77e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  459 RGNQAYKNGYMSKAEECYTHGINSSPSKdnseysvkplALCYGNRAAARISLGRLREAISDCEMAASLDPSYIKAYMRAA 538
Cdd:PLN03088     8 KAKEAFVDDDFALAVDLYTQAIDLDPNN----------AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKG 77

                           90
                   ....*....|..
gi 1039012968  539 NCHLVLGELGSA 550
Cdd:PLN03088    78 TACMKLEEYQTA 89
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
712-833 8.75e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 44.91  E-value: 8.75e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  712 NENQEECRESPASLVATISELLRYKNAGNEAVRDRKYMEAVEQYTAALSRNVDSR----PFAAICFCNRAAANQALVQIA 787
Cdd:COG4785     11 ALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRalalPDLAQLYYERGVAYDSLGDYD 90

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1039012968  788 DAIADCSLAMALDENYTKAVSRRATLHEMIRDYDQAASDLQRLISI 833
Cdd:COG4785     91 LAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALEL 136
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 500-556 1.39e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.41  E-value: 1.39e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1039012968  500 YGNRAAARISLGRLREAISDCEMAASLDPSYIKAYMRAANCHLVLGELGSAVQYFNK 556
Cdd:COG5010     57 ESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEK 113
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 688-833 1.43e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.41  E-value: 1.43e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  688 HFYLGNLEKALDILEKLQQVEYTCNENQEECRESPASLVATISELLRYKNAGNEAVRDRKYMEAVEQYTAALSRNvdsrP 767
Cdd:COG5010     10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD----P 85

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039012968  768 FAAICFCNRAAANQALVQIADAIADCSLAMALDENYTKAVSRRATLHEMIRDYDQAASDLQRLISI 833
Cdd:COG5010     86 NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 676-833 1.52e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 45.75  E-value: 1.52e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  676 LIVWRWNKISKSHFYLGNLEKALDILEKLQQVEYTCNENQEECREspasLVATISELLRYKNAGNEAVRDRKYMEAVEQY 755
Cdd:COG3914     26 LALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAA----AAALLLLAALLELAALLLQALGRYEEALALY 101

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039012968  756 TAALSRNvdsrPFAAICFCNRAAANQALVQIADAIADCSLAMALDENYTKAVSRRATLHEMIRDYDQAASDLQRLISI 833
Cdd:COG3914    102 RRALALN----PDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALEL 175
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 739-848 1.61e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 45.16  E-value: 1.61e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  739 GNEAVRDRKYMEAVEQYTAAlsrnVDSRPFAAICFCNRAAANQALVQIADAIADCSLAMALDENYTKAVSRRATLHEMIR 818
Cdd:PLN03088     9 AKEAFVDDDFALAVDLYTQA----IDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1039012968  819 DYDQAASDLQRLISI---------LVKQSDKTKTPETSV 848
Cdd:PLN03088    85 EYQTAKAALEKGASLapgdsrftkLIKECDEKIAEEEKD 123
ZUO1 COG5269
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ...
 869-1000 2.25e-04

Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227594 [Multi-domain]  Cd Length: 379  Bit Score: 44.64  E-value: 2.25e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  869 EKSKEGIHLDFFLIMGV---KTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileEVHKGADRLFKMIGEA 945
Cdd:COG5269     35 EDFKNWKKVDLYALLGLskyRTKAIPPQILKAHKKKVYKYHPDKTAA-----------------GGNKGCDEFFKLIQKA 97

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  946 YSVLSDPTKRSDYE---LEEEIRKARAS--------------RESYRSRKAAEASSPPYQTSRR-------YWK--DSWR 999
Cdd:COG5269     98 REVLGDRKLRLQYDsndFDADVPPPRIYtpdeffevwepvfeREARFSKKQPVPSLGPSDSSLKeveefyeFWSnfDSWR 177


                   .
gi 1039012968 1000 T 1000
Cdd:COG5269    178 T 178
PRK14296 PRK14296
chaperone protein DnaJ; Provisional
 878-959 2.48e-04

chaperone protein DnaJ; Provisional


Pssm-ID: 237666 [Multi-domain]  Cd Length: 372  Bit Score: 44.55  E-value: 2.48e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  878 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDkaaqilVRSESegpwlkeileevhkGADRLFKMIGEAYSVLSDPTKRSD 957
Cdd:PRK14296     5 DYYEVLGVSKTASEQEIRQAYRKLAKQYHPD------LNKSP--------------DAHDKMVEINEAADVLLDKDKRKQ 64


                   ..
gi 1039012968  958 YE 959
Cdd:PRK14296    65 YD 66
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
750-833 6.05e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.77  E-value: 6.05e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  750 EAVEQYTAALSRNvdsrPFAAICFCNRAAANQALVQIADAIAdCSLAMALDENYTKAVSRRATLHEMIRDYDQAASDLQR 829
Cdd:COG3063     10 EAEEYYEKALELD----PDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84


                   ....
gi 1039012968  830 LISI 833
Cdd:COG3063     85 ALEL 88
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
450-559 1.06e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 41.82  E-value: 1.06e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  450 PDVCEVWRLRGNQAYKNGYMSKAEECYTHGINSSPSKDNSeysvkplalcYGNRAAARISLGRLREAISDCEMAASLDPS 529
Cdd:COG4785    104 PDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA----------YLNRGIALYYLGRYELAIADLEKALELDPN 173

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1039012968  530 ----YIKAYMRA----------------ANCHLVLGELGSAVQYFNKCMK 559
Cdd:COG4785    174 dperALWLYLAErkldpekalallledwATAYLLQGDTEEARELFKLALA 223
TPR_1 pfam00515
Tetratricopeptide repeat;
497-530 1.61e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.02  E-value: 1.61e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1039012968  497 ALCYGNRAAARISLGRLREAISDCEMAASLDPSY 530
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 503-556 1.91e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 42.29  E-value: 1.91e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1039012968  503 RAAARISLGRLREAISDCEMAASLDPSYIKAYMRAANCHLVLGELGSAVQYFNK 556
Cdd:COG3914     84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRR 137
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 502-559 2.28e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 41.07  E-value: 2.28e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1039012968  502 NRAAARISLGRLREAISDCEMAASLDPSYIKAYMRAANCHLVLGELGSAVQYFNKCMK 559
Cdd:cd24142      5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIE 62
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
506-553 2.67e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.23  E-value: 2.67e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1039012968  506 ARISLGRLREAISDCEMAASLDPSYIKAYMRAANCHLVLGELGSAVQY 553
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL 48
LPA1 PLN03098
LOW PSII ACCUMULATION1; Provisional
 471-552 4.82e-03

LOW PSII ACCUMULATION1; Provisional


Pssm-ID: 215573 [Multi-domain]  Cd Length: 453  Bit Score: 40.64  E-value: 4.82e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  471 KAEECYTHG-----INSSPSKDNSEYSVKPLALCYgNRAAARISLGRLREAISDCEMAASLDPSYIK---AYMRAANCHL 542
Cdd:PLN03098    45 RAPRRLLFGrssssPSSSPAKDGSEADVKTAEDAV-NLGLSLFSKGRVKDALAQFETALELNPNPDEaqaAYYNKACCHA 123

                           90
                   ....*....|
gi 1039012968  543 VLGELGSAVQ 552
Cdd:PLN03098   124 YREEGKKAAD 133
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 739-834 5.29e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.06  E-value: 5.29e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  739 GNEAVRDRKYMEAVEQYTAALSRNVDSRPFAAicfcNRAAANQALVQIADAIADCSLAMALDENYTKAVSRRATLHEMIR 818
Cdd:COG4235     24 GRAYLRLGRYDEALAAYEKALRLDPDNADALL----DLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG 99

                           90
                   ....*....|....*.
gi 1039012968  819 DYDQAASDLQRLISIL 834
Cdd:COG4235    100 DYAEAIAAWQKLLALL 115
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 454-649 6.40e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 39.71  E-value: 6.40e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  454 EVWRLRGNQAYKNGYMSKAEECYTHGINSSPSKdnseysvkplALCYGNRAAARISLGRLREAISDCEMAASLDPSYIKA 533
Cdd:COG2956    111 EALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN----------AHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARA 180

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039012968  534 YMRAANCHLVLGELGSAVQYFNKCMKstssvcldrrttieaaeglQQAQRVADFTSCASIFLEKRTPDGASDALvpiANA 613
Cdd:COG2956    181 LLLLAELYLEQGDYEEAIAALERALE-------------------QDPDYLPALPRLAELYEKLGDPEEALELL---RKA 238

                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 1039012968  614 LSISSCSDKLLqMKAEALFMIRRYKEVIELCENTLQ 649
Cdd:COG2956    239 LELDPSDDLLL-ALADLLERKEGLEAALALLERQLR 273
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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