|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00112 |
PTZ00112 |
origin recognition complex 1 protein; Provisional |
1-1132 |
0e+00 |
|
origin recognition complex 1 protein; Provisional
Pssm-ID: 240274 [Multi-domain] Cd Length: 1164 Bit Score: 1731.77 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 1 MTPNKKNHKNYESHKSLQSREDRESHHFRKVHNFHLNDNEILSPTKGGIKLDVNKLSILSFSGTPRKEEQKKKESRLPNY 80
Cdd:PTZ00112 1 MTPKKKIHKSYESHKICQPRENRETNKVPNFHNFHLNDNEILSPTKGGIKLDVSKLSILSFENTPRKEEKKKKNLNLPDY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 81 EQIQNNTLDFYIPLNERSDTPKKNISNVTTTEKTkNQKEKHSFDSSSSSFFSSPYSSHSCVSD----------SSSSVLS 150
Cdd:PTZ00112 81 NQIQNNTHDFYIDLNERSKTPIKNNDNVTTPIKA-NKKEKHNLDSSSSSSISSSLTNISFFSSptsiysclsnSLSSKHS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 151 PSAIHEPQVTHFIISSDTTPRKAAIS-ESPRKQTGVTNTQNYDRMRRSPRNLSTSKSST---------EKDSYKKKDGEG 220
Cdd:PTZ00112 160 PKVIKENQSTHVNISSDNSPRNKEISnKQLKKQTNVTHTTCYDKMRRSPRNTSTIKNNTndknkeknkEKDKNIKKDRDG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 221 RKEKKRNSKETKVNNSYDNVRTLRSATKEkslrskSQKDEKKVVSGTRSSVLLKRKSQCLWKDSYVYQNLLKRAKTGVPR 300
Cdd:PTZ00112 240 DKQTKRNSEKSKVQNSHFDVRILRSYTKE------NKKDEKNVVSGIRSSVLLKRKSQCLRKDSYVYSNHQKKAKTGDPK 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 301 KSGRSDNRSNrrnESDDEDDSGSTG----------------QSSARPSTRSSSSVRRQTQRQTQKKNRPLRHAATINKRS 364
Cdd:PTZ00112 314 NIIHRNNGSS---NSNNDDTSSSNHlgsnrisnrnpsspykKQTTTKHTNNTKNNKYNKTKTTQKFNHPLRHHATINKRS 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 365 SMLPVREQKNRGDNEEKEQHKEFTIEEVEKLTKDASIKLVEKNSCQYEDGVIYESLFINQVKYSIGDDVLLFCmgSGEGG 444
Cdd:PTZ00112 391 SMLPMSEQKGRGASEKSEYIKEFTMEEVAKLTKDTTIKLVEENSCQYEDGVIYESIQINDVEYSIGDDVLIFC--TGNGN 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 445 TGTSGTTTRQPSKNKNKQKNGYQLRKGKISSFYQNEETNQVEAEVCIYIDQHDAACIRELCEKQKSRRSKADFEVFLDEK 524
Cdd:PTZ00112 469 TYNGKSGTKKNQNNKNIKENIYQLRKGKISSFYKNTNSNQVEAEVCIYYDQHDAQYIKELEEKQKSRRCKADFEVFLDDD 548
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 525 TRNFYLLGNIDFKIVDAKMILKKINVYNEKSLYDEDKTSKQGKDKFLCTHYVKEREERICDVQNSEHWDNMVLGSSDLYY 604
Cdd:PTZ00112 549 TKNFYLLGNIHFKILDAKMILKKIYVYNEKELYDEDKTAKQGKDKFLCTHYLKEREERICFIQNSEHWDNLVLGSSDLYY 628
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 605 SFSNGKKSSKNKSLKMIIEKLKVNEAGGVNNQSDNATVSPSNTATSSKTRSSNKrtgstlkaTPTRGSTPKQSAQKNA-- 682
Cdd:PTZ00112 629 SFSNEKKSNKNKSLKLIIEKLKINEQGGQKKNSKKEYMNPAQTTTSSKAKTHSK--------TKNDHNKSKTSKNKEPss 700
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 683 --------------KVDINNFIKQDQENYYVNLLRNITDPTDKAIRMMQLDVVPKYLPCREKEIKEVHGFLESGIKQSGS 748
Cdd:PTZ00112 701 tsflqdvkkksdphNVDFKSFIKQDQENYYVNLLRNITDPTDKAIRMMQLDVVPKYLPCREKEIKEVHGFLESGIKQSGS 780
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 749 NQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPEFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNAFKMLDRLF 828
Cdd:PTZ00112 781 NQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLF 860
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 829 NQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKVNSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDE 908
Cdd:PTZ00112 861 NQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDE 940
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 909 IEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQLFDSPLTNAINYLPW 988
Cdd:PTZ00112 941 IEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQLFDSPLTNAINYLPW 1020
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 989 PFKMFLTCVIVELRMLNDFIIPYKKVLNRYRVLVETSGKYIGMCSNAELFKIMLDKLVKMGILLIRPYIPLESLAKNKNK 1068
Cdd:PTZ00112 1021 PFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGMCSNNELFKIMLDKLVKMGILLIRPYIPLESLAKNKNK 1100
|
1130 1140 1150 1160 1170 1180
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1042335152 1069 ETLLGFNESSKKNGPEGSKSTRTQVSAEIDKESGDMGLELNVETQLIITALMKDAECSQKLNFY 1132
Cdd:PTZ00112 1101 EALLGFNESSKKNANETSKSTRTQVSAEIDKESGDMGLELNVETQLIITALMKDAECSQKLNFY 1164
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
719-1051 |
2.17e-36 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 142.29 E-value: 2.17e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 719 DVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILyISGMPGTGKTATVYSVIQLLQHKTKQKLLPeFNVFEINGMNVvhp 798
Cdd:COG1474 22 DYVPDRLPHREEEIEELASALRPALRGERPSNVL-IYGPTGTGKTAVAKYVLEELEEEAEERGVD-VRVVYVNCRQA--- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 799 NAAYQVLYkQLFNK------KPPNALNAFKMLDRLFNQNKKDNRNVsILIIDEIDYLITKT-QKVLFTLFDWPTKV-NSK 870
Cdd:COG1474 97 STRYRVLS-RILEElgsgedIPSTGLSTDELFDRLYEALDERDGVL-VVVLDEIDYLVDDEgDDLLYQLLRANEELeGAR 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 871 LVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN-CKE-IIDHTAIQLCARKVANVSGDIRKALQ 948
Cdd:COG1474 175 VGVIGISNDLEFLENLDPRVKSSLGEEEIVFPPYDADELRDILEDRAELaFYDgVLSDEVIPLIAALAAQEHGDARKAID 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 949 ICRKAFEN--KRGQKIV-PRDITEATNQLFDSPLTNAINYLPWPFKMFLtCVIVELRMLNDFIIPYKKVLNRYRVLVETS 1025
Cdd:COG1474 255 LLRVAGEIaeREGSDRVtEEHVREAREKIERDRLLEVLRGLPTHEKLVL-LAIAELLKDGEDPVRTGEVYEAYEELCEEL 333
|
330 340 350
....*....|....*....|....*....|
gi 1042335152 1026 G----KYigmcsnaELFKIMLDKLVKMGIL 1051
Cdd:COG1474 334 GvdplSY-------RRVRDYLSELEMLGLI 356
|
|
| TIGR02928 |
TIGR02928 |
orc1/cdc6 family replication initiation protein; Members of this protein family are found ... |
715-1026 |
1.94e-29 |
|
orc1/cdc6 family replication initiation protein; Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274354 [Multi-domain] Cd Length: 365 Bit Score: 121.20 E-value: 1.94e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 715 MMQLDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILyISGMPGTGKTATVYSVIQLLQHKTKQKLLPeFNVFEINGMN 794
Cdd:TIGR02928 7 LLEPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVF-IYGKTGTGKTAVTKYVMKELEEAAEDRDVR-VVTVYVNCQI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 795 VvhpNAAYQVLYKqLFNK------KPPN-ALNAFKMLDRLFNQNKKDNRNVsILIIDEIDYLITKTQKVLFTL--FDWPT 865
Cdd:TIGR02928 85 L---DTLYQVLVE-LANQlrgsgeEVPTtGLSTSEVFRRLYKELNERGDSL-IIVLDEIDYLVGDDDDLLYQLsrARSNG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 866 KV-NSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC--KEIIDHTAIQLCARKVANVSGD 942
Cdd:TIGR02928 160 DLdNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAfyDGVLDDGVIPLCAALAAQEHGD 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 943 IRKALQICRKAFEN--KRGQKIVPRD-ITEATNQLFDSPLTNAINYLPWPFKMFLTcVIVELRMLNDFIIPYKKVLNRYR 1019
Cdd:TIGR02928 240 ARKAIDLLRVAGEIaeREGAERVTEDhVEKAQEKIEKDRLLELIRGLPTHSKLVLL-AIANLAANDEDPFRTGEVYEVYK 318
|
....*..
gi 1042335152 1020 VLVETSG 1026
Cdd:TIGR02928 319 EVCEDIG 325
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
752-898 |
7.39e-14 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 69.54 E-value: 7.39e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 752 LYISGMPGTGKTATVYSVIQLLQhktkqkllpeFNVFEINGMNVVhpnaayqvlykqlfnkkPPNALNAFKMLDRLFNQN 831
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELG----------APFIEISGSELV-----------------SKYVGESEKRLRELFEAA 53
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1042335152 832 KKDNRnvSILIIDEIDYLITK-----------TQKVLFTLFDWPTKVNSKLVLIAISNTMD-LPERLIPRCRSRLAFGR 898
Cdd:pfam00004 54 KKLAP--CVIFIDEIDALAGSrgsggdsesrrVVNQLLTELDGFTSSNSKVIVIAATNRPDkLDPALLGRFDRIIEFPL 130
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
726-897 |
2.26e-10 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 60.24 E-value: 2.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 726 PCREKEIKEVHGFLESGIKQSgsnqiLYISGMPGTGKTATVYSVIQLLQHktkqkllPEFNVFEINGMNvvhpnaayqvl 805
Cdd:cd00009 1 VGQEEAIEALREALELPPPKN-----LLLYGPPGTGKTTLARAIANELFR-------PGAPFLYLNASD----------- 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 806 ykqLFNKKPPNALNAFKMLDRLFNQNKKdnRNVSILIIDEIDYLITKTQKVLFTLFD---WPTKVNSKLVLIAISNTM-- 880
Cdd:cd00009 58 ---LLEGLVVAELFGHFLVRLLFELAEK--AKPGVLFIDEIDSLSRGAQNALLRVLEtlnDLRIDRENVRVIGATNRPll 132
|
170
....*....|....*...
gi 1042335152 881 -DLPERLIPRCRSRLAFG 897
Cdd:cd00009 133 gDLDRALYDRLDIRIVIP 150
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
748-893 |
2.63e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 51.22 E-value: 2.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 748 SNQILYISGMPGTGKTATVYSVIQLLQhktkqklLPEFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNAFKMLDRL 827
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELG-------PPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALAL 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1042335152 828 FNQNKKDnrnvsILIIDEIDYLITKTQKVL-----FTLFDWPTKVNSKLVLIAISNTMDLPERLIPRCRSR 893
Cdd:smart00382 74 ARKLKPD-----VLILDEITSLLDAEQEALlllleELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFD 139
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00112 |
PTZ00112 |
origin recognition complex 1 protein; Provisional |
1-1132 |
0e+00 |
|
origin recognition complex 1 protein; Provisional
Pssm-ID: 240274 [Multi-domain] Cd Length: 1164 Bit Score: 1731.77 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 1 MTPNKKNHKNYESHKSLQSREDRESHHFRKVHNFHLNDNEILSPTKGGIKLDVNKLSILSFSGTPRKEEQKKKESRLPNY 80
Cdd:PTZ00112 1 MTPKKKIHKSYESHKICQPRENRETNKVPNFHNFHLNDNEILSPTKGGIKLDVSKLSILSFENTPRKEEKKKKNLNLPDY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 81 EQIQNNTLDFYIPLNERSDTPKKNISNVTTTEKTkNQKEKHSFDSSSSSFFSSPYSSHSCVSD----------SSSSVLS 150
Cdd:PTZ00112 81 NQIQNNTHDFYIDLNERSKTPIKNNDNVTTPIKA-NKKEKHNLDSSSSSSISSSLTNISFFSSptsiysclsnSLSSKHS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 151 PSAIHEPQVTHFIISSDTTPRKAAIS-ESPRKQTGVTNTQNYDRMRRSPRNLSTSKSST---------EKDSYKKKDGEG 220
Cdd:PTZ00112 160 PKVIKENQSTHVNISSDNSPRNKEISnKQLKKQTNVTHTTCYDKMRRSPRNTSTIKNNTndknkeknkEKDKNIKKDRDG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 221 RKEKKRNSKETKVNNSYDNVRTLRSATKEkslrskSQKDEKKVVSGTRSSVLLKRKSQCLWKDSYVYQNLLKRAKTGVPR 300
Cdd:PTZ00112 240 DKQTKRNSEKSKVQNSHFDVRILRSYTKE------NKKDEKNVVSGIRSSVLLKRKSQCLRKDSYVYSNHQKKAKTGDPK 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 301 KSGRSDNRSNrrnESDDEDDSGSTG----------------QSSARPSTRSSSSVRRQTQRQTQKKNRPLRHAATINKRS 364
Cdd:PTZ00112 314 NIIHRNNGSS---NSNNDDTSSSNHlgsnrisnrnpsspykKQTTTKHTNNTKNNKYNKTKTTQKFNHPLRHHATINKRS 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 365 SMLPVREQKNRGDNEEKEQHKEFTIEEVEKLTKDASIKLVEKNSCQYEDGVIYESLFINQVKYSIGDDVLLFCmgSGEGG 444
Cdd:PTZ00112 391 SMLPMSEQKGRGASEKSEYIKEFTMEEVAKLTKDTTIKLVEENSCQYEDGVIYESIQINDVEYSIGDDVLIFC--TGNGN 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 445 TGTSGTTTRQPSKNKNKQKNGYQLRKGKISSFYQNEETNQVEAEVCIYIDQHDAACIRELCEKQKSRRSKADFEVFLDEK 524
Cdd:PTZ00112 469 TYNGKSGTKKNQNNKNIKENIYQLRKGKISSFYKNTNSNQVEAEVCIYYDQHDAQYIKELEEKQKSRRCKADFEVFLDDD 548
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 525 TRNFYLLGNIDFKIVDAKMILKKINVYNEKSLYDEDKTSKQGKDKFLCTHYVKEREERICDVQNSEHWDNMVLGSSDLYY 604
Cdd:PTZ00112 549 TKNFYLLGNIHFKILDAKMILKKIYVYNEKELYDEDKTAKQGKDKFLCTHYLKEREERICFIQNSEHWDNLVLGSSDLYY 628
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 605 SFSNGKKSSKNKSLKMIIEKLKVNEAGGVNNQSDNATVSPSNTATSSKTRSSNKrtgstlkaTPTRGSTPKQSAQKNA-- 682
Cdd:PTZ00112 629 SFSNEKKSNKNKSLKLIIEKLKINEQGGQKKNSKKEYMNPAQTTTSSKAKTHSK--------TKNDHNKSKTSKNKEPss 700
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 683 --------------KVDINNFIKQDQENYYVNLLRNITDPTDKAIRMMQLDVVPKYLPCREKEIKEVHGFLESGIKQSGS 748
Cdd:PTZ00112 701 tsflqdvkkksdphNVDFKSFIKQDQENYYVNLLRNITDPTDKAIRMMQLDVVPKYLPCREKEIKEVHGFLESGIKQSGS 780
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 749 NQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPEFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNAFKMLDRLF 828
Cdd:PTZ00112 781 NQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLF 860
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 829 NQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKVNSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDE 908
Cdd:PTZ00112 861 NQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDE 940
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 909 IEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQLFDSPLTNAINYLPW 988
Cdd:PTZ00112 941 IEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQLFDSPLTNAINYLPW 1020
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 989 PFKMFLTCVIVELRMLNDFIIPYKKVLNRYRVLVETSGKYIGMCSNAELFKIMLDKLVKMGILLIRPYIPLESLAKNKNK 1068
Cdd:PTZ00112 1021 PFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGMCSNNELFKIMLDKLVKMGILLIRPYIPLESLAKNKNK 1100
|
1130 1140 1150 1160 1170 1180
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1042335152 1069 ETLLGFNESSKKNGPEGSKSTRTQVSAEIDKESGDMGLELNVETQLIITALMKDAECSQKLNFY 1132
Cdd:PTZ00112 1101 EALLGFNESSKKNANETSKSTRTQVSAEIDKESGDMGLELNVETQLIITALMKDAECSQKLNFY 1164
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
719-1051 |
2.17e-36 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 142.29 E-value: 2.17e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 719 DVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILyISGMPGTGKTATVYSVIQLLQHKTKQKLLPeFNVFEINGMNVvhp 798
Cdd:COG1474 22 DYVPDRLPHREEEIEELASALRPALRGERPSNVL-IYGPTGTGKTAVAKYVLEELEEEAEERGVD-VRVVYVNCRQA--- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 799 NAAYQVLYkQLFNK------KPPNALNAFKMLDRLFNQNKKDNRNVsILIIDEIDYLITKT-QKVLFTLFDWPTKV-NSK 870
Cdd:COG1474 97 STRYRVLS-RILEElgsgedIPSTGLSTDELFDRLYEALDERDGVL-VVVLDEIDYLVDDEgDDLLYQLLRANEELeGAR 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 871 LVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN-CKE-IIDHTAIQLCARKVANVSGDIRKALQ 948
Cdd:COG1474 175 VGVIGISNDLEFLENLDPRVKSSLGEEEIVFPPYDADELRDILEDRAELaFYDgVLSDEVIPLIAALAAQEHGDARKAID 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 949 ICRKAFEN--KRGQKIV-PRDITEATNQLFDSPLTNAINYLPWPFKMFLtCVIVELRMLNDFIIPYKKVLNRYRVLVETS 1025
Cdd:COG1474 255 LLRVAGEIaeREGSDRVtEEHVREAREKIERDRLLEVLRGLPTHEKLVL-LAIAELLKDGEDPVRTGEVYEAYEELCEEL 333
|
330 340 350
....*....|....*....|....*....|
gi 1042335152 1026 G----KYigmcsnaELFKIMLDKLVKMGIL 1051
Cdd:COG1474 334 GvdplSY-------RRVRDYLSELEMLGLI 356
|
|
| TIGR02928 |
TIGR02928 |
orc1/cdc6 family replication initiation protein; Members of this protein family are found ... |
715-1026 |
1.94e-29 |
|
orc1/cdc6 family replication initiation protein; Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274354 [Multi-domain] Cd Length: 365 Bit Score: 121.20 E-value: 1.94e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 715 MMQLDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILyISGMPGTGKTATVYSVIQLLQHKTKQKLLPeFNVFEINGMN 794
Cdd:TIGR02928 7 LLEPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVF-IYGKTGTGKTAVTKYVMKELEEAAEDRDVR-VVTVYVNCQI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 795 VvhpNAAYQVLYKqLFNK------KPPN-ALNAFKMLDRLFNQNKKDNRNVsILIIDEIDYLITKTQKVLFTL--FDWPT 865
Cdd:TIGR02928 85 L---DTLYQVLVE-LANQlrgsgeEVPTtGLSTSEVFRRLYKELNERGDSL-IIVLDEIDYLVGDDDDLLYQLsrARSNG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 866 KV-NSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC--KEIIDHTAIQLCARKVANVSGD 942
Cdd:TIGR02928 160 DLdNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAfyDGVLDDGVIPLCAALAAQEHGD 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 943 IRKALQICRKAFEN--KRGQKIVPRD-ITEATNQLFDSPLTNAINYLPWPFKMFLTcVIVELRMLNDFIIPYKKVLNRYR 1019
Cdd:TIGR02928 240 ARKAIDLLRVAGEIaeREGAERVTEDhVEKAQEKIEKDRLLELIRGLPTHSKLVLL-AIANLAANDEDPFRTGEVYEVYK 318
|
....*..
gi 1042335152 1020 VLVETSG 1026
Cdd:TIGR02928 319 EVCEDIG 325
|
|
| cdc6 |
PRK00411 |
ORC1-type DNA replication protein; |
719-1026 |
5.92e-29 |
|
ORC1-type DNA replication protein;
Pssm-ID: 234751 [Multi-domain] Cd Length: 394 Bit Score: 120.72 E-value: 5.92e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 719 DVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILyISGMPGTGKTATVYSVIQLLQHKTKqkllpefnvfeinGMNVVHP 798
Cdd:PRK00411 26 DYVPENLPHREEQIEELAFALRPALRGSRPLNVL-IYGPPGTGKTTTVKKVFEELEEIAV-------------KVVYVYI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 799 N--------AAYQVLYKQLFNKKPPNALNAFkmlDRLFNQ--NKKDNRN-VSILIIDEIDYLITKT-QKVLFTLFDWPTK 866
Cdd:PRK00411 92 NcqidrtryAIFSEIARQLFGHPPPSSGLSF---DELFDKiaEYLDERDrVLIVALDDINYLFEKEgNDVLYSLLRAHEE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 867 V-NSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC--KEIIDHTAIQLCARKVANVSGDI 943
Cdd:PRK00411 169 YpGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGfyPGVVDDEVLDLIADLTAREHGDA 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 944 RKALQICRKAFEN--KRG-QKIVPRDITEATNQLFDSPLTNAINYLPWPFKMFLtCVIVELRMLNDFIIPYKKVLNRYRV 1020
Cdd:PRK00411 249 RVAIDLLRRAGLIaeREGsRKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLL-RAIVRLLKKGGDEVTTGEVYEEYKE 327
|
....*.
gi 1042335152 1021 LVETSG 1026
Cdd:PRK00411 328 LCEELG 333
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
752-898 |
7.39e-14 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 69.54 E-value: 7.39e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 752 LYISGMPGTGKTATVYSVIQLLQhktkqkllpeFNVFEINGMNVVhpnaayqvlykqlfnkkPPNALNAFKMLDRLFNQN 831
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELG----------APFIEISGSELV-----------------SKYVGESEKRLRELFEAA 53
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1042335152 832 KKDNRnvSILIIDEIDYLITK-----------TQKVLFTLFDWPTKVNSKLVLIAISNTMD-LPERLIPRCRSRLAFGR 898
Cdd:pfam00004 54 KKLAP--CVIFIDEIDALAGSrgsggdsesrrVVNQLLTELDGFTSSNSKVIVIAATNRPDkLDPALLGRFDRIIEFPL 130
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
726-897 |
2.26e-10 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 60.24 E-value: 2.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 726 PCREKEIKEVHGFLESGIKQSgsnqiLYISGMPGTGKTATVYSVIQLLQHktkqkllPEFNVFEINGMNvvhpnaayqvl 805
Cdd:cd00009 1 VGQEEAIEALREALELPPPKN-----LLLYGPPGTGKTTLARAIANELFR-------PGAPFLYLNASD----------- 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 806 ykqLFNKKPPNALNAFKMLDRLFNQNKKdnRNVSILIIDEIDYLITKTQKVLFTLFD---WPTKVNSKLVLIAISNTM-- 880
Cdd:cd00009 58 ---LLEGLVVAELFGHFLVRLLFELAEK--AKPGVLFIDEIDSLSRGAQNALLRVLEtlnDLRIDRENVRVIGATNRPll 132
|
170
....*....|....*...
gi 1042335152 881 -DLPERLIPRCRSRLAFG 897
Cdd:cd00009 133 gDLDRALYDRLDIRIVIP 150
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
748-893 |
2.63e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 51.22 E-value: 2.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 748 SNQILYISGMPGTGKTATVYSVIQLLQhktkqklLPEFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNAFKMLDRL 827
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELG-------PPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALAL 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1042335152 828 FNQNKKDnrnvsILIIDEIDYLITKTQKVL-----FTLFDWPTKVNSKLVLIAISNTMDLPERLIPRCRSR 893
Cdd:smart00382 74 ARKLKPD-----VLILDEITSLLDAEQEALlllleELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFD 139
|
|
| ATPase_2 |
pfam01637 |
ATPase domain predominantly from Archaea; This family contain a conserved P-loop motif that is ... |
728-880 |
5.70e-06 |
|
ATPase domain predominantly from Archaea; This family contain a conserved P-loop motif that is involved in binding ATP. There are eukaryote members as well as archaeal members in this family.
Pssm-ID: 376582 [Multi-domain] Cd Length: 222 Bit Score: 48.86 E-value: 5.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 728 REKEIKEVHGFLEsgikqSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKllpefnVFEIN--GMNVVHPNAAYQV- 804
Cdd:pfam01637 4 REKELKELEEWAE-----RGPNLIYVIYGPEGCGKTALLRESIENLLDLGYYV------IYYDPlrRYFISKLDRFEEVr 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 805 -LYKQLFNKKPPNAL----NAFKMLDRLFNQNKKDNRNVsILIIDEIDYLITKTQ-----KVLFTLFDWPTKV-NSKLVL 873
Cdd:pfam01637 73 rLAEALGIAVPKAELeeskLAFLAIELLLEALKRRGKKI-AIIIDEVQQAIGLNGaellvKELLNLIEYLTKEyHLCHVI 151
|
....*..
gi 1042335152 874 IAISNTM 880
Cdd:pfam01637 152 CLSSEGL 158
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
725-862 |
7.85e-05 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 44.42 E-value: 7.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 725 LPCREKEIKEVHGFLESGIkqSGSNQILYISGMPGTGKTATV--------YSVIQLLQHKTKQ--------KLLPEFNVF 788
Cdd:pfam13191 2 LVGREEELEQLLDALDRVR--SGRPPSVLLTGEAGTGKTTLLrellraleRDGGYFLRGKCDEnlpyspllEALTREGLL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 789 E-INGMNVVHPNAAYQVLYKQLFNKKPP------NALNAFkmLDRLFNQNKKDNRNVsILIIDEIDYLITKTQKVLFTLF 861
Cdd:pfam13191 80 RqLLDELESSLLEAWRAALLEALAPVPElpgdlaERLLDL--LLRLLDLLARGERPL-VLVLDDLQWADEASLQLLAALL 156
|
.
gi 1042335152 862 D 862
Cdd:pfam13191 157 R 157
|
|
| AAA_lid_10 |
pfam17872 |
AAA lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the ... |
928-955 |
1.84e-04 |
|
AAA lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.
Pssm-ID: 407729 [Multi-domain] Cd Length: 99 Bit Score: 41.73 E-value: 1.84e-04
10 20
....*....|....*....|....*...
gi 1042335152 928 AIQLCARKVANVSGDIRKALQICRKAFE 955
Cdd:pfam17872 49 AIEIASRKVASVSGDARRALKICKRAAE 76
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
823-945 |
8.26e-04 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 42.31 E-value: 8.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 823 MLDRLFNQNKKDNRNVSILIIDEIDYLITK--TQKVLFTLFDWPTKVNSKLVLiaisnTMDLPERLIP----RCRSRLAF 896
Cdd:pfam00308 83 IRDNKTNQFKEKYRNVDVLLIDDIQFLAGKegTQEEFFHTFNALHESGKQIVF-----SSDRPPKELEeledRLRSRFQW 157
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1042335152 897 GRLVfspykgdEIEK--------IIKERLENCKEIIDHTAIQLCARkvaNVSGDIRK 945
Cdd:pfam00308 158 GLVT-------DIEPpdletrlaILRKKAEAEGIEIPPEVLNFIAQ---RVTDNVRE 204
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
750-886 |
3.37e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 38.86 E-value: 3.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042335152 750 QILYISGMPGTGKTAtvysviqLLQHKTKQKLLPEFNVFEINGMNVVHPNAAYQVLYKQLFNkkPPNALNAFKMLDRLFN 829
Cdd:pfam13401 6 GILVLTGESGTGKTT-------LLRRLLEQLPEVRDSVVFVDLPSGTSPKDLLRALLRALGL--PLSGRLSKEELLAALQ 76
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1042335152 830 QNKKDNRNVSILIIDEIDYLitkTQKVLFTLFDWPtKVNSKLVLIAISNTMDLPERL 886
Cdd:pfam13401 77 QLLLALAVAVVLIIDEAQHL---SLEALEELRDLL-NLSSKLLQLILVGTPELRELL 129
|
|
| |
