|
Name |
Accession |
Description |
Interval |
E-value |
| propeller_TolB |
TIGR02800 |
tol-pal system beta propeller repeat protein TolB; Members of this protein family are the TolB ... |
12-439 |
0e+00 |
|
tol-pal system beta propeller repeat protein TolB; Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274305 [Multi-domain] Cd Length: 417 Bit Score: 576.53 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 12 ANAALELVITDGIDSARPIAVVPFKWEGA----AALPTDISAVIASDLQRSGKFSPVPTNKMPQTPFNESEVNFDSWTNL 87
Cdd:TIGR02800 7 AAADLTIEITKGGASALPIAVAPFSNDGGgspdANLGESIAEVIANDLKRSGLFSPVDKAGLPSNPIAESQVNPAAWQAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 88 GVDALLTGSITQNEQGNYVVNYQLVDIVRGQLtggqgkalgsdgelvlskdhVLFNKVATVEASRMREYAHRISDLVYEQ 167
Cdd:TIGR02800 87 GADALVVGSVTPNGNGRYTVRFRLYDVVSGQL--------------------QLLGKQYTVTASQLRRVAHRIADAIYEK 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 168 LTGDRGAFMTRIAYVVVSDTERfPYQLRVSDYDGYNERLVLRSKQPLMSPSWSPDGQKLAYVSFQNGQSEIYIMNIYTGE 247
Cdd:TIGR02800 147 LTGERGAFSTRIAYVSKSGKSR-RYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 248 REKITSYPRHNGAPKFSPDGSKLALVLSKTGSLQVYTFDLRSRQLTQITRGRSNNTEPFWHPDGKSLVFTSDRGGKPQIY 327
Cdd:TIGR02800 226 REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIY 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 328 QVDLGSGDTNRLTWQGSQNLSGQITPDGRFLVMVNRSDSGFNLAKQDLETGALQVLTKTLLDESPSIAPNGGMVVYSSMY 407
Cdd:TIGR02800 306 MMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTR 385
|
410 420 430
....*....|....*....|....*....|..
gi 1042377772 408 NKKNVLSMVSIDGRFKARLPATNGRVRAPAWS 439
Cdd:TIGR02800 386 GGRGVLGLVSTDGRFRARLPLGNGDVREPAWS 417
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
270-430 |
5.37e-48 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 161.76 E-value: 5.37e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 270 LALVLSKTGSLQVYTFDLRSRQLTQITRGRSNNTEPFWHPDGKSLVFTSDRGGKPQIYQVDLGSGDTNRLTWQGSQNLSG 349
Cdd:COG0823 1 LAFTLSRDGNSDIYVVDLDGGEPRRLTNSPGIDTSPAWSPDGRRIAFTSDRGGGPQIYVVDADGGEPRRLTFGGGYNASP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 350 QITPDGRFLVMVNRSDSGFNLAKQDLETGALQVLTKTLLdeSPSIAPNGGMVVYSSMYNKKNVLSMVSIDGRfKARLPAT 429
Cdd:COG0823 81 SWSPDGKRLAFVSRSDGRFDIYVLDLDGGAPRRLTDGPG--SPSWSPDGRRIVFSSDRGGRPDLYVVDLDGR-KRRLTPA 157
|
.
gi 1042377772 430 N 430
Cdd:COG0823 158 S 158
|
|
| TolB_N |
pfam04052 |
TolB amino-terminal domain; TolB is an essential periplasmic component of the tol-dependent ... |
16-120 |
6.17e-45 |
|
TolB amino-terminal domain; TolB is an essential periplasmic component of the tol-dependent translocation system. This function of this amino terminal domain is uncertain.
Pssm-ID: 461148 Cd Length: 105 Bit Score: 151.62 E-value: 6.17e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 16 LELVITDGIDSARPIAVVPFKWEGAAALPTDISAVIASDLQRSGKFSPVPTNKMPQTPFNESEVNFDSWTNLGVDALLTG 95
Cdd:pfam04052 1 LRIEITGGGDTALPIAVVPFQGEGGADLPQDISEVIAADLERSGLFRPIDPAAFPQRPTSDSEVDFADWRALGADALVTG 80
|
90 100
....*....|....*....|....*
gi 1042377772 96 SITQNEQGNYVVNYQLVDIVRGQLT 120
Cdd:pfam04052 81 SVTRGGDGRYKVEFRLYDVVKGKQL 105
|
|
| tolB |
PRK01029 |
Tol-Pal system protein TolB; |
104-441 |
4.88e-26 |
|
Tol-Pal system protein TolB;
Pssm-ID: 234889 [Multi-domain] Cd Length: 428 Bit Score: 109.47 E-value: 4.88e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 104 NYVVNYQLVDIVRGQLTGGQG-KALGSdgeLVLSKDhvlfnkvatveASRMREYAHRISDLVYEQLTGDRGAFMTRIAYV 182
Cdd:PRK01029 87 FIFIEAHYPELVFSLKKEGKNpQKLFS---LELSGD-----------LSKDRQKIHEAADTIHYALTGVPGISSGKIIFS 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 183 VVS---DTERFPYQLRVSDYDGYNERLVLRSKQPLMSPSWSPDGQKLA--YVSFQNGQSEIYIMNIYTGEREKITSYPRH 257
Cdd:PRK01029 153 LSTtnsDTELKQGELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPylYVSYKLGVPKIFLGSLENPAGKKILALQGN 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 258 NGAPKFSPDGSKLALVLSKTGS--LQVYTFDL------RSRQLTQITRGRSNNtePFWHPDGKSLVFTSDRGGKPQIYQV 329
Cdd:PRK01029 233 QLMPTFSPRKKLLAFISDRYGNpdLFIQSFSLetgaigKPRRLLNEAFGTQGN--PSFSPDGTRLVFVSNKDGRPRIYIM 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 330 DLG-SGDTNRLTWQGSQNLSGQI-TPDGRFLVMVNRSDSGFNLAKQDLETGALQVLTKTLLD-ESPSIAPNGGMVVYSSM 406
Cdd:PRK01029 311 QIDpEGQSPRLLTKKYRNSSCPAwSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENkESPSWAIDSLHLVYSAG 390
|
330 340 350
....*....|....*....|....*....|....*
gi 1042377772 407 YNKKNVLSMVSIDGRFKARLPATNGRVRAPAWSPF 441
Cdd:PRK01029 391 NSNESELYLISLITKKTRKIVIGSGEKRFPSWGAF 425
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| propeller_TolB |
TIGR02800 |
tol-pal system beta propeller repeat protein TolB; Members of this protein family are the TolB ... |
12-439 |
0e+00 |
|
tol-pal system beta propeller repeat protein TolB; Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274305 [Multi-domain] Cd Length: 417 Bit Score: 576.53 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 12 ANAALELVITDGIDSARPIAVVPFKWEGA----AALPTDISAVIASDLQRSGKFSPVPTNKMPQTPFNESEVNFDSWTNL 87
Cdd:TIGR02800 7 AAADLTIEITKGGASALPIAVAPFSNDGGgspdANLGESIAEVIANDLKRSGLFSPVDKAGLPSNPIAESQVNPAAWQAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 88 GVDALLTGSITQNEQGNYVVNYQLVDIVRGQLtggqgkalgsdgelvlskdhVLFNKVATVEASRMREYAHRISDLVYEQ 167
Cdd:TIGR02800 87 GADALVVGSVTPNGNGRYTVRFRLYDVVSGQL--------------------QLLGKQYTVTASQLRRVAHRIADAIYEK 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 168 LTGDRGAFMTRIAYVVVSDTERfPYQLRVSDYDGYNERLVLRSKQPLMSPSWSPDGQKLAYVSFQNGQSEIYIMNIYTGE 247
Cdd:TIGR02800 147 LTGERGAFSTRIAYVSKSGKSR-RYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 248 REKITSYPRHNGAPKFSPDGSKLALVLSKTGSLQVYTFDLRSRQLTQITRGRSNNTEPFWHPDGKSLVFTSDRGGKPQIY 327
Cdd:TIGR02800 226 REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIY 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 328 QVDLGSGDTNRLTWQGSQNLSGQITPDGRFLVMVNRSDSGFNLAKQDLETGALQVLTKTLLDESPSIAPNGGMVVYSSMY 407
Cdd:TIGR02800 306 MMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTR 385
|
410 420 430
....*....|....*....|....*....|..
gi 1042377772 408 NKKNVLSMVSIDGRFKARLPATNGRVRAPAWS 439
Cdd:TIGR02800 386 GGRGVLGLVSTDGRFRARLPLGNGDVREPAWS 417
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
270-430 |
5.37e-48 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 161.76 E-value: 5.37e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 270 LALVLSKTGSLQVYTFDLRSRQLTQITRGRSNNTEPFWHPDGKSLVFTSDRGGKPQIYQVDLGSGDTNRLTWQGSQNLSG 349
Cdd:COG0823 1 LAFTLSRDGNSDIYVVDLDGGEPRRLTNSPGIDTSPAWSPDGRRIAFTSDRGGGPQIYVVDADGGEPRRLTFGGGYNASP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 350 QITPDGRFLVMVNRSDSGFNLAKQDLETGALQVLTKTLLdeSPSIAPNGGMVVYSSMYNKKNVLSMVSIDGRfKARLPAT 429
Cdd:COG0823 81 SWSPDGKRLAFVSRSDGRFDIYVLDLDGGAPRRLTDGPG--SPSWSPDGRRIVFSSDRGGRPDLYVVDLDGR-KRRLTPA 157
|
.
gi 1042377772 430 N 430
Cdd:COG0823 158 S 158
|
|
| TolB_N |
pfam04052 |
TolB amino-terminal domain; TolB is an essential periplasmic component of the tol-dependent ... |
16-120 |
6.17e-45 |
|
TolB amino-terminal domain; TolB is an essential periplasmic component of the tol-dependent translocation system. This function of this amino terminal domain is uncertain.
Pssm-ID: 461148 Cd Length: 105 Bit Score: 151.62 E-value: 6.17e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 16 LELVITDGIDSARPIAVVPFKWEGAAALPTDISAVIASDLQRSGKFSPVPTNKMPQTPFNESEVNFDSWTNLGVDALLTG 95
Cdd:pfam04052 1 LRIEITGGGDTALPIAVVPFQGEGGADLPQDISEVIAADLERSGLFRPIDPAAFPQRPTSDSEVDFADWRALGADALVTG 80
|
90 100
....*....|....*....|....*
gi 1042377772 96 SITQNEQGNYVVNYQLVDIVRGQLT 120
Cdd:pfam04052 81 SVTRGGDGRYKVEFRLYDVVKGKQL 105
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
179-340 |
4.09e-39 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 138.27 E-value: 4.09e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 179 IAYVVVSDTErfpYQLRVSDYDGYNERLVLRSKQPLMSPSWSPDGQKLAYVSFQNGQSEIYIMNIYTGEREKITSYPRHN 258
Cdd:COG0823 1 LAFTLSRDGN---SDIYVVDLDGGEPRRLTNSPGIDTSPAWSPDGRRIAFTSDRGGGPQIYVVDADGGEPRRLTFGGGYN 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 259 GAPKFSPDGSKLALVLSKTGSLQVYTFDLRSRQLTQITRGRSNntePFWHPDGKSLVFTSDRGGKPQIYQVDLgSGDTNR 338
Cdd:COG0823 78 ASPSWSPDGKRLAFVSRSDGRFDIYVLDLDGGAPRRLTDGPGS---PSWSPDGRRIVFSSDRGGRPDLYVVDL-DGRKRR 153
|
..
gi 1042377772 339 LT 340
Cdd:COG0823 154 LT 155
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
226-382 |
8.84e-37 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 132.10 E-value: 8.84e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 226 LAYVSFQNGQSEIYIMNIYTGEREKITSYPRHNGAPKFSPDGSKLALVLSKTGSLQVYTFDLRSRQLTQITRGRSNNTEP 305
Cdd:COG0823 1 LAFTLSRDGNSDIYVVDLDGGEPRRLTNSPGIDTSPAWSPDGRRIAFTSDRGGGPQIYVVDADGGEPRRLTFGGGYNASP 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1042377772 306 FWHPDGKSLVFTSDRGGKPQIYQVDLGSGDTNRLTwqgSQNLSGQITPDGRFLVMVNRSDSGFNLAKQDLETGALQV 382
Cdd:COG0823 81 SWSPDGKRLAFVSRSDGRFDIYVLDLDGGAPRRLT---DGPGSPSWSPDGRRIVFSSDRGGRPDLYVVDLDGRKRRL 154
|
|
| tolB |
PRK01029 |
Tol-Pal system protein TolB; |
104-441 |
4.88e-26 |
|
Tol-Pal system protein TolB;
Pssm-ID: 234889 [Multi-domain] Cd Length: 428 Bit Score: 109.47 E-value: 4.88e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 104 NYVVNYQLVDIVRGQLTGGQG-KALGSdgeLVLSKDhvlfnkvatveASRMREYAHRISDLVYEQLTGDRGAFMTRIAYV 182
Cdd:PRK01029 87 FIFIEAHYPELVFSLKKEGKNpQKLFS---LELSGD-----------LSKDRQKIHEAADTIHYALTGVPGISSGKIIFS 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 183 VVS---DTERFPYQLRVSDYDGYNERLVLRSKQPLMSPSWSPDGQKLA--YVSFQNGQSEIYIMNIYTGEREKITSYPRH 257
Cdd:PRK01029 153 LSTtnsDTELKQGELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPylYVSYKLGVPKIFLGSLENPAGKKILALQGN 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 258 NGAPKFSPDGSKLALVLSKTGS--LQVYTFDL------RSRQLTQITRGRSNNtePFWHPDGKSLVFTSDRGGKPQIYQV 329
Cdd:PRK01029 233 QLMPTFSPRKKLLAFISDRYGNpdLFIQSFSLetgaigKPRRLLNEAFGTQGN--PSFSPDGTRLVFVSNKDGRPRIYIM 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 330 DLG-SGDTNRLTWQGSQNLSGQI-TPDGRFLVMVNRSDSGFNLAKQDLETGALQVLTKTLLD-ESPSIAPNGGMVVYSSM 406
Cdd:PRK01029 311 QIDpEGQSPRLLTKKYRNSSCPAwSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENkESPSWAIDSLHLVYSAG 390
|
330 340 350
....*....|....*....|....*....|....*
gi 1042377772 407 YNKKNVLSMVSIDGRFKARLPATNGRVRAPAWSPF 441
Cdd:PRK01029 391 NSNESELYLISLITKKTRKIVIGSGEKRFPSWGAF 425
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
169-338 |
2.58e-22 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 100.11 E-value: 2.58e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 169 TGDRGAFMTRIAYVVVSDTERFPYQLrvSDYDGYNERlvlrskqplmSPSWSPDGQKLAYVSFQNGQSEIYIMNIYT-GE 247
Cdd:COG4946 312 DGKRVAFEARGEVFTVPAEKGPTRNL--TNTPGVRER----------LPAWSPDGKSIAYFSDASGEYELYIAPADGsGE 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 248 REKITSY-PRHNGAPKFSPDGSKLA-----------------------------------------LVLSKTGSL---QV 282
Cdd:COG4946 380 PKQLTLGdLGRVFNPVWSPDGKKIAftdnrgrlwvvdlasgkvrkvdtdgygdgisdlawspdskwLAYSKPGPNqlsQI 459
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1042377772 283 YTFDLRSRQLTQITRGRSNNTEPFWHPDGKSLVFTSDRGGKPQIYQVDLGSGDTNR 338
Cdd:COG4946 460 FLYDVETGKTVQLTDGRYDDGSPAFSPDGKYLYFLSSRDFNPTYGDLDFDLAFPRT 515
|
|
| tolB |
PRK04043 |
Tol-Pal system protein TolB; |
2-438 |
3.07e-21 |
|
Tol-Pal system protein TolB;
Pssm-ID: 235212 [Multi-domain] Cd Length: 419 Bit Score: 95.06 E-value: 3.07e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 2 FVLLSSMTNVANAAlELVITDGIDSARPIAVVPFKWEGAAALPTDISAVIASDLQRSGKFSpVPTNKMPqtpfNESEVNF 81
Cdd:PRK04043 6 LFLLFSISLFAVDA-TLDIVKKGQKLPKIVVEDASDLNDANLKKKFFKILVNDLKVSSHFE-VSENKDQ----SSGDINY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 82 DSWTNLGVDALLTGSITQNEQGNYVVNYQLVDIVRGQLTggqgkalgsdgelvlskdhvlFNKVATV-EASRMREYAHRI 160
Cdd:PRK04043 80 NELKDKKVDLVFRYSLANKNGNKLSLRVKLYDVNTGSLK---------------------FEKDYTInSLDRYPFLAHKS 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 161 SDLVYEQLTGDRGAFMTRiaYVVVS---DTERfpYQLRVSDYdgynerlVLRSKQPLMS------PSWSPDGQK-LAYVS 230
Cdd:PRK04043 139 AIDINDYLKAPSIDWMKR--KVVFSkytGPKK--SNIVLADY-------TLTYQKVIVKgglnifPKWANKEQTaFYYTS 207
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 231 FQNGQSEIYIMNIYTGEREKITSyprHNG---APKFSPDGSKLALVLSKTGSLQVYTFDLRSRQLTQITRGR----SNNt 303
Cdd:PRK04043 208 YGERKPTLYKYNLYTGKKEKIAS---SQGmlvVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPgidvNGN- 283
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 304 epFWHpDGKSLVFTSDRGGKPQIYQVDLGSGDTNRLTWQGSQNLSgqITPDGRFLVMVNR------SDSGFNLAKQDLET 377
Cdd:PRK04043 284 --FVE-DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSS--VSTYKNYIVYSSRetnnefGKNTFNLYLISTNS 358
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1042377772 378 GALQVLTKTLLDESPSIAPNGGMVVYSSMYNKKNVLSMVSIDGRFKARLPATNGRVRAPAW 438
Cdd:PRK04043 359 DYIRRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVGKIQSIDW 419
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
215-440 |
3.34e-17 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 84.32 E-value: 3.34e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 215 MSPSWSPDGQKLAYVSFQNGQSEIYIMNIYTGEREKITSYP--------------------------RHN---------G 259
Cdd:COG4946 64 SFPRFSPDGKWIAFTSDYDGNTDVYVMPAEGGEPKRLTYHPandrvvgwtpdgksvlfasnrgsppsRSNqlytvpvdgG 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 260 APK-----------FSPDGSKLALVlSKTGSL------------QVYTFDLRSRQLTQITRGRSNNTEPFWHPDgkSLVF 316
Cdd:COG4946 144 LPErlplppagdgsFSPDGKKLAYT-RIGREFrtwkryrggtagDIWIYDLGTGEFTRLTDFGGNDRNPMWIGD--RIYF 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 317 TSDRGGKPQIYQVDLGSGDTNRLTW-------------------QGSQ------------------------------NL 347
Cdd:COG4946 221 LSDRDGTFNLYSYDPDGKDLRQLTHfkdfdvrfpstdggrivyeQGGDlylldlasgeprklnitlagdfpqrrprwvDV 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 348 SGQIT-----PDGRFLVMVNRSDSgFNLAKQDletGALQVLTKT--LLDESPSIAPNGGMVVYSSMYNKKNVLSMVSIDG 420
Cdd:COG4946 301 SGYLTsfalsPDGKRVAFEARGEV-FTVPAEK---GPTRNLTNTpgVRERLPAWSPDGKSIAYFSDASGEYELYIAPADG 376
|
330 340
....*....|....*....|..
gi 1042377772 421 RFKAR-LPATN-GRVRAPAWSP 440
Cdd:COG4946 377 SGEPKqLTLGDlGRVFNPVWSP 398
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
119-440 |
1.26e-12 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 70.07 E-value: 1.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 119 LTGGQGKAL--GSDGELVL--SKD--HVLFNKVATVEASRMREyAHRIS--DLVYEQLTGDRGAFMT------RIAYVVV 184
Cdd:COG4946 92 AEGGEPKRLtyHPANDRVVgwTPDgkSVLFASNRGSPPSRSNQ-LYTVPvdGGLPERLPLPPAGDGSfspdgkKLAYTRI 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 185 SDTERF--PY------QLRVSDYDGYNERLVLRSKQPLMSPSWSPDgqKLAYVSFQNGQSEIYIMNIYTGEREKITSypr 256
Cdd:COG4946 171 GREFRTwkRYrggtagDIWIYDLGTGEFTRLTDFGGNDRNPMWIGD--RIYFLSDRDGTFNLYSYDPDGKDLRQLTH--- 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 257 HNGAPKFSPDGSKLALVLSKTGSLqvYTFDLRSRQLTQIT---RGRSNNTEPFW------------HPDGKSLVFTSdRG 321
Cdd:COG4946 246 FKDFDVRFPSTDGGRIVYEQGGDL--YLLDLASGEPRKLNitlAGDFPQRRPRWvdvsgyltsfalSPDGKRVAFEA-RG 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 322 gkpQIYQVDLGSGDTNRLTW-QGSQNLSGQITPDGRFLVMVnrSDSG--FNLAKQDLET-GALQVLTKTLL--DESPSIA 395
Cdd:COG4946 323 ---EVFTVPAEKGPTRNLTNtPGVRERLPAWSPDGKSIAYF--SDASgeYELYIAPADGsGEPKQLTLGDLgrVFNPVWS 397
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1042377772 396 PNGGMVVYSsmyNKKNVLSMVSIDGRfKARLPATNG---RVRAPAWSP 440
Cdd:COG4946 398 PDGKKIAFT---DNRGRLWVVDLASG-KVRKVDTDGygdGISDLAWSP 441
|
|
| PD40 |
pfam07676 |
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. ... |
292-328 |
6.35e-12 |
|
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. This repeat corresponds to the RIVW repeat identified in cell surface proteins [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16].
Pssm-ID: 429587 [Multi-domain] Cd Length: 37 Bit Score: 59.84 E-value: 6.35e-12
10 20 30
....*....|....*....|....*....|....*..
gi 1042377772 292 LTQITRGRSNNTEPFWHPDGKSLVFTSDRGGKPQIYQ 328
Cdd:pfam07676 1 LGRLTNTPGNETAPSWSPDGKRLAFSSDRDGKPDIYV 37
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
218-440 |
2.52e-11 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 64.93 E-value: 2.52e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 218 SWSPDGQKLAYVSFQNGqseIYIMNIYTGERekITSYPRHNGAPK---FSPDGSKLAlVLSKTGSLQVYtfDLRSRQLTQ 294
Cdd:COG2319 169 AFSPDGKLLASGSDDGT---VRLWDLATGKL--LRTLTGHTGAVRsvaFSPDGKLLA-SGSADGTVRLW--DLATGKLLR 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 295 ITRGRSNN-TEPFWHPDGKSLVFTSDRGgkpQIYQVDLGSGDTNR-LTWQGSQNLSGQITPDGRFLVMVNRSDSgfnlAK 372
Cdd:COG2319 241 TLTGHSGSvRSVAFSPDGRLLASGSADG---TVRLWDLATGELLRtLTGHSGGVNSVAFSPDGKLLASGSDDGT----VR 313
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1042377772 373 Q-DLETGALQVLTKTLLDESPSIA--PNGGMVVYSSMynkKNVLSMVSID-GRFKARLPATNGRVRAPAWSP 440
Cdd:COG2319 314 LwDLATGKLLRTLTGHTGAVRSVAfsPDGKTLASGSD---DGTVRLWDLAtGELLRTLTGHTGAVTSVAFSP 382
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
246-405 |
7.10e-11 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 64.67 E-value: 7.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 246 GEREKITSYPRHNGAPKFSPDGSKLALVLSKTGSLQVYTFDLRSRQLTQIT--------RGrsnntepfWHPDGKSLVFT 317
Cdd:COG4946 51 GRARRLTSHPGYESFPRFSPDGKWIAFTSDYDGNTDVYVMPAEGGEPKRLTyhpandrvVG--------WTPDGKSVLFA 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 318 SDRGGKP----QIYQVDLGSGDTNRLTW-QGSQnlsGQITPDGRFLVmVNRSDSGFNLAKQ------------DLETGAL 380
Cdd:COG4946 123 SNRGSPPsrsnQLYTVPVDGGLPERLPLpPAGD---GSFSPDGKKLA-YTRIGREFRTWKRyrggtagdiwiyDLGTGEF 198
|
170 180
....*....|....*....|....*.
gi 1042377772 381 QVLTKTLL-DESPSIApnGGMVVYSS 405
Cdd:COG4946 199 TRLTDFGGnDRNPMWI--GDRIYFLS 222
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
218-440 |
1.45e-10 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 62.62 E-value: 1.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 218 SWSPDGQKLAYVSFQNgqsEIYIMNIYTGERekITSYPRHNGAPK---FSPDGSKLAlvlskTGSL--QVYTFDLRSRQL 292
Cdd:COG2319 127 AFSPDGKTLASGSADG---TVRLWDLATGKL--LRTLTGHSGAVTsvaFSPDGKLLA-----SGSDdgTVRLWDLATGKL 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 293 TQITRGRSNNTEPF-WHPDGKSLVfTSDRGGKPQIYqvDLGSGDT-NRLTWQGSQNLSGQITPDGRFLVmvnrSDSGFNL 370
Cdd:COG2319 197 LRTLTGHTGAVRSVaFSPDGKLLA-SGSADGTVRLW--DLATGKLlRTLTGHSGSVRSVAFSPDGRLLA----SGSADGT 269
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1042377772 371 AKQ-DLETGALQVLTKTLLDESPSIA--PNGGMVVYSSMYNKKNVLSMVSidGRFKARLPATNGRVRAPAWSP 440
Cdd:COG2319 270 VRLwDLATGELLRTLTGHSGGVNSVAfsPDGKLLASGSDDGTVRLWDLAT--GKLLRTLTGHTGAVRSVAFSP 340
|
|
| Pgl |
COG2706 |
6-phosphogluconolactonase, cycloisomerase 2 family [Carbohydrate transport and metabolism]; |
219-393 |
5.32e-08 |
|
6-phosphogluconolactonase, cycloisomerase 2 family [Carbohydrate transport and metabolism];
Pssm-ID: 442025 [Multi-domain] Cd Length: 352 Bit Score: 54.53 E-value: 5.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 219 WSPDGQKLAYVSFQNGQSEIYIMNIYTGEREKITSY-------PRHngaPKFSPDGSKLALVLSKTGSLQVYTFDLRSRQ 291
Cdd:COG2706 157 FDPDGRFLYVPDLGTDRIYVYRLDPATGKLPEPPEVslppgsgPRH---LAFHPNGRFAYVINELDSTVSVYAYDAATGT 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 292 LTQITR------GRSNNTEPFW---HPDGKsLVFTSDRG-GKPQIYQVDlgsGDTNRLTWQGSQNLSGQ------ITPDG 355
Cdd:COG2706 234 LTLIQTvstlpeDFTGENWAADihiSPDGR-FLYVSNRGhNSIAVFAID---ADGGKLTLVGHVPTGGKwprdfaIDPDG 309
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1042377772 356 RFLVMVN-RSDS--GFNLakqDLETGALQVLTKTLLDESPS 393
Cdd:COG2706 310 RFLLVANqKSDNitVFRI---DADTGKLTPTGRSVPVPSPV 347
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
216-359 |
2.21e-07 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 52.61 E-value: 2.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 216 SPSWSPDGQKLAYVSFQNgqsEIYIMNIYTGERekITSYPRHNGAPK---FSPDGSKLAlVLSKTGSLQVYtfDLRSRQL 292
Cdd:COG2319 251 SVAFSPDGRLLASGSADG---TVRLWDLATGEL--LRTLTGHSGGVNsvaFSPDGKLLA-SGSDDGTVRLW--DLATGKL 322
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1042377772 293 TQITRGRSNNTEPF-WHPDGKSLVFTSDRGGkpqiyqVDLGSGDTNRL--TWQGSQN--LSGQITPDGRFLV 359
Cdd:COG2319 323 LRTLTGHTGAVRSVaFSPDGKTLASGSDDGT------VRLWDLATGELlrTLTGHTGavTSVAFSPDGRTLA 388
|
|
| PD40 |
pfam07676 |
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. ... |
205-240 |
3.03e-07 |
|
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. This repeat corresponds to the RIVW repeat identified in cell surface proteins [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16].
Pssm-ID: 429587 [Multi-domain] Cd Length: 37 Bit Score: 46.36 E-value: 3.03e-07
10 20 30
....*....|....*....|....*....|....*.
gi 1042377772 205 RLVLRSKQPLMSPSWSPDGQKLAYVSFQNGQSEIYI 240
Cdd:pfam07676 2 GRLTNTPGNETAPSWSPDGKRLAFSSDRDGKPDIYV 37
|
|
| DPPIV_N |
pfam00930 |
Dipeptidyl peptidase IV (DPP IV) N-terminal region; This family is an alignment of the region ... |
219-340 |
5.25e-07 |
|
Dipeptidyl peptidase IV (DPP IV) N-terminal region; This family is an alignment of the region to the N-terminal side of the active site. The Prosite motif does not correspond to this Pfam entry.
Pssm-ID: 395744 [Multi-domain] Cd Length: 352 Bit Score: 51.55 E-value: 5.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 219 WSPDGQKLAYVSFQNGQSEIYIMNIYTGEREKITS----YPR---------------HNGAP------------------ 261
Cdd:pfam00930 108 WSPDGSRLAFLRFDESEVPIITLPYYTDEGPGPEVreikYPKagapnptvelfvydlASGKTvevvppddlsdadyyitr 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 262 -KFSPDGsKLALVLSKTGS--LQVYTFDLRSRQ----LTQITRG--RSNNTEPFWHPDGKSLVFTSDRGGKPQIYQVDLG 332
Cdd:pfam00930 188 vKWVPDG-KLLVQWLNRDQnrLKVVLCDAETGRtvviLEETSDGwvELHQDPHFIKRDGSGFLWISERDGYNHLYLYDLD 266
|
....*...
gi 1042377772 333 SGDTNRLT 340
Cdd:pfam00930 267 GKSPIQLT 274
|
|
| Pectate_lyase22 |
pfam14583 |
Oligogalacturonate lyase; This is a family of oligogalacturonate lyases, referred to more ... |
200-327 |
2.85e-06 |
|
Oligogalacturonate lyase; This is a family of oligogalacturonate lyases, referred to more generally as pectate lyase family 22. These proteins fold into 7-bladed beta-propellers.
Pssm-ID: 434052 [Multi-domain] Cd Length: 386 Bit Score: 49.24 E-value: 2.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 200 DGYNERLVlRSKQPLMSPS---WSPDGQKLAYVSFQNGQSE--IYIMNIYTGEREKITSYP-------RHNGAPKFSpDG 267
Cdd:pfam14583 224 DGSNMRKV-KTHAEGESCThefWVPDGSALVYVSYLKGSTDrfIYSADPVTLENRQLTSMPacshlmsNYDGTLMVG-DG 301
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1042377772 268 SKLALVLSKTGSLQV------YTFDLRSRQLTQITRGRSN-----------NTEPFWHPDGKSLVFTSDRGGKPQIY 327
Cdd:pfam14583 302 SDAPVDVQDDSGYKIendpflYVFNMKNGTQHRVARHDTSwevfegdrqvtHPHPSFTPDDKQILFTSDVHGKPALY 378
|
|
| YvrE |
COG3386 |
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ... |
305-440 |
3.48e-06 |
|
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway
Pssm-ID: 442613 [Multi-domain] Cd Length: 266 Bit Score: 48.35 E-value: 3.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 305 PFWHPDGkSLVFTSDRGGKpqIYQVDLGSGDTNRLTwQGSQNLSGQ-ITPDGRFLVmvnrSDSGFNLAKQDLETGALQVL 383
Cdd:COG3386 13 PVWDPDG-RLYWVDIPGGR--IHRYDPDGGAVEVFA-EPSGRPNGLaFDPDGRLLV----ADHGRGLVRFDPADGEVTVL 84
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1042377772 384 TKTLldESPSIAPNGGMV-----VY---SSMYNKKNVLSMVSIDGRFKA---RLPATNGrvraPAWSP 440
Cdd:COG3386 85 ADEY--GKPLNRPNDGVVdpdgrLYftdMGEYLPTGALYRVDPDGSLRVladGLTFPNG----IAFSP 146
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
218-321 |
2.53e-05 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 46.44 E-value: 2.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 218 SWSPDGQKLAYVSFQNGqseIYIMNIYTGERekITSYPRHNGAPK---FSPDGSKLAlvlskTGSLQ--VYTFDLRSRQL 292
Cdd:COG2319 295 AFSPDGKLLASGSDDGT---VRLWDLATGKL--LRTLTGHTGAVRsvaFSPDGKTLA-----SGSDDgtVRLWDLATGEL 364
|
90 100 110
....*....|....*....|....*....|
gi 1042377772 293 TQITRGRSNN-TEPFWHPDGKSLVFTSDRG 321
Cdd:COG2319 365 LRTLTGHTGAvTSVAFSPDGRTLASGSADG 394
|
|
| Lactonase |
pfam10282 |
Lactonase, 7-bladed beta-propeller; This entry contains bacterial 6-phosphogluconolactonases ... |
255-393 |
9.47e-05 |
|
Lactonase, 7-bladed beta-propeller; This entry contains bacterial 6-phosphogluconolactonases (6PGL)YbhE-type (EC:3.1.1.31) which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonising enzyme carboxy-cis,cis-muconate cyclase (EC:5.5.1.5) and muconate cycloisomerase (EC:5.5.1.1), which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold.
Pssm-ID: 431196 [Multi-domain] Cd Length: 340 Bit Score: 44.14 E-value: 9.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 255 PRHnGApkFSPDGSKLALVLSKTGSLQVYTFDLRSRQLTQITR---------GRSNNTEPFWHPDGKSLvFTSDRGGKP- 324
Cdd:pfam10282 193 PRH-LA--FHPNGKYAYVVNELSSTVTVFEYDPATGTFEELQTvstlpegftGTNGAAAIRVSPDGKFL-YVSNRGHDSi 268
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1042377772 325 QIYQVDlgsGDTNRLTWQGSQNLSGQ------ITPDGRFLVMVNRSDSGFNLAKQDLETGALQVLTKTLLDESPS 393
Cdd:pfam10282 269 AVFAVD---EAGGTLTLVERVSTEGDfprdfnIDPDGKFLVVANQDSDNVTVFRRDPETGKLTLLGKDIEVPEPV 340
|
|
| DPPIV_N |
pfam00930 |
Dipeptidyl peptidase IV (DPP IV) N-terminal region; This family is an alignment of the region ... |
209-271 |
1.45e-04 |
|
Dipeptidyl peptidase IV (DPP IV) N-terminal region; This family is an alignment of the region to the N-terminal side of the active site. The Prosite motif does not correspond to this Pfam entry.
Pssm-ID: 395744 [Multi-domain] Cd Length: 352 Bit Score: 43.85 E-value: 1.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042377772 209 RSKQPLMSPSWSPDGQKLAYVSFQNgqseIYIMNIYTGEREKITSYP---RHNGAPKF---------------SPDGSKL 270
Cdd:pfam00930 40 PGEGKIQDAKWSPDGDRLAFVRDNN----LYVRELATGKEIQITSDGsdgIFNGVADWvyeeevlgsnsavwwSPDGSRL 115
|
.
gi 1042377772 271 A 271
Cdd:pfam00930 116 A 116
|
|
| PD40 |
pfam07676 |
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. ... |
248-283 |
1.95e-04 |
|
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. This repeat corresponds to the RIVW repeat identified in cell surface proteins [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16].
Pssm-ID: 429587 [Multi-domain] Cd Length: 37 Bit Score: 38.65 E-value: 1.95e-04
10 20 30
....*....|....*....|....*....|....*.
gi 1042377772 248 REKITSYPRHNGAPKFSPDGSKLALVLSKTGSLQVY 283
Cdd:pfam07676 1 LGRLTNTPGNETAPSWSPDGKRLAFSSDRDGKPDIY 36
|
|
| Pectate_lyase22 |
pfam14583 |
Oligogalacturonate lyase; This is a family of oligogalacturonate lyases, referred to more ... |
263-337 |
3.16e-04 |
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Oligogalacturonate lyase; This is a family of oligogalacturonate lyases, referred to more generally as pectate lyase family 22. These proteins fold into 7-bladed beta-propellers.
Pssm-ID: 434052 [Multi-domain] Cd Length: 386 Bit Score: 42.70 E-value: 3.16e-04
10 20 30 40 50 60 70
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gi 1042377772 263 FSPDGSKLALVLSKTGSLQVYTFDLRSRQLTQITRGRSNNT-EPFWHPDGKSLVFTSDrgGKpQIYQVDLGSGDTN 337
Cdd:pfam14583 43 FTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTfGGFLSPDDDALFYVKD--GR-NLMRVDLATLEEN 115
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