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Conserved domains on  [gi|1044514643|gb|ANT63354|]
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hypothetical protein AYJ57_21900 (plasmid) [Salipiger sp. CCB-MM3]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pyr_redox_2 super family cl39093
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 57-146 1.66e-07

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


The actual alignment was detected with superfamily member PRK06292:

Pssm-ID: 476868 [Multi-domain]  Cd Length: 460  Bit Score: 50.18  E-value: 1.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1044514643  57 VLVASGRPPSLEGLDLEEAGLDLDDKGcR----RATLQ-----W----------------RDGDDAGWNAM-QSGGCSLR 110
Cdd:PRK06292  260 VLVATGRRPNTDGLGLENTGIELDERG-RpvvdEHTQTsvpgiYaagdvngkppllheaaDEGRIAAENAAgDVAGGVRY 338

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1044514643 111 GPMVS-------LCRRGAQEEQA--------IGTARYADQGRARVEGENHG 146
Cdd:PRK06292  339 HPIPSvvftdpqIASVGLTEEELkaagidyvVGEVPFEAQGRARVMGKNDG 389
 
Name Accession Description Interval E-value
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
 57-146 1.66e-07

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 50.18  E-value: 1.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1044514643  57 VLVASGRPPSLEGLDLEEAGLDLDDKGcR----RATLQ-----W----------------RDGDDAGWNAM-QSGGCSLR 110
Cdd:PRK06292  260 VLVATGRRPNTDGLGLENTGIELDERG-RpvvdEHTQTsvpgiYaagdvngkppllheaaDEGRIAAENAAgDVAGGVRY 338

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1044514643 111 GPMVS-------LCRRGAQEEQA--------IGTARYADQGRARVEGENHG 146
Cdd:PRK06292  339 HPIPSvvftdpqIASVGLTEEELkaagidyvVGEVPFEAQGRARVMGKNDG 389
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
 57-83 8.40e-06

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 45.08  E-value: 8.40e-06
                          10        20
                  ....*....|....*....|....*..
gi 1044514643  57 VLVASGRPPSLEGLDLEEAGLDLDDKG 83
Cdd:COG1249   260 VLVATGRRPNTDGLGLEAAGVELDERG 286
 
Name Accession Description Interval E-value
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
 57-146 1.66e-07

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 50.18  E-value: 1.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1044514643  57 VLVASGRPPSLEGLDLEEAGLDLDDKGcR----RATLQ-----W----------------RDGDDAGWNAM-QSGGCSLR 110
Cdd:PRK06292  260 VLVATGRRPNTDGLGLENTGIELDERG-RpvvdEHTQTsvpgiYaagdvngkppllheaaDEGRIAAENAAgDVAGGVRY 338

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1044514643 111 GPMVS-------LCRRGAQEEQA--------IGTARYADQGRARVEGENHG 146
Cdd:PRK06292  339 HPIPSvvftdpqIASVGLTEEELkaagidyvVGEVPFEAQGRARVMGKNDG 389
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
 57-83 8.40e-06

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 45.08  E-value: 8.40e-06
                          10        20
                  ....*....|....*....|....*..
gi 1044514643  57 VLVASGRPPSLEGLDLEEAGLDLDDKG 83
Cdd:COG1249   260 VLVATGRRPNTDGLGLEAAGVELDERG 286
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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