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Conserved domains on  [gi|1049300681|gb|ANY27284|]
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GEO09202p1, partial [Drosophila melanogaster]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L36 pfam00444
Ribosomal protein L36;
70-107 3.96e-15

Ribosomal protein L36;


:

Pssm-ID: 459811  Cd Length: 38  Bit Score: 64.07  E-value: 3.96e-15
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1049300681  70 FKVKGRLKRRCKDCYIVVRQERGYVICPTHPRHKQMSM 107
Cdd:pfam00444   1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
 
Name Accession Description Interval E-value
Ribosomal_L36 pfam00444
Ribosomal protein L36;
70-107 3.96e-15

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 64.07  E-value: 3.96e-15
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1049300681  70 FKVKGRLKRRCKDCYIVVRQERGYVICPTHPRHKQMSM 107
Cdd:pfam00444   1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 71-104 7.03e-09

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 48.20  E-value: 7.03e-09
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1049300681  71 KVKGRLKRRCKDCYIVVRQERGYVICPTHPRHKQ 104
Cdd:COG0257     2 KVRASVKKICRDCKVVRRKGRVYVICKKNPRHKQ 35
rpmJ PRK00831
50S ribosomal protein L36; Validated
 71-104 2.50e-04

50S ribosomal protein L36; Validated


Pssm-ID: 179138  Cd Length: 41  Bit Score: 36.12  E-value: 2.50e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1049300681  71 KVKGRLKR---RCKDCYIVVRQERGYVICPTHPRHKQ 104
Cdd:PRK00831    2 KVRNSLKSlknRHRDCQVVRRKGRVYVINKKNPRFKA 38
 
Name Accession Description Interval E-value
Ribosomal_L36 pfam00444
Ribosomal protein L36;
70-107 3.96e-15

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 64.07  E-value: 3.96e-15
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1049300681  70 FKVKGRLKRRCKDCYIVVRQERGYVICPTHPRHKQMSM 107
Cdd:pfam00444   1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 71-104 7.03e-09

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 48.20  E-value: 7.03e-09
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1049300681  71 KVKGRLKRRCKDCYIVVRQERGYVICPTHPRHKQ 104
Cdd:COG0257     2 KVRASVKKICRDCKVVRRKGRVYVICKKNPRHKQ 35
rpmJ PRK00831
50S ribosomal protein L36; Validated
 71-104 2.50e-04

50S ribosomal protein L36; Validated


Pssm-ID: 179138  Cd Length: 41  Bit Score: 36.12  E-value: 2.50e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1049300681  71 KVKGRLKR---RCKDCYIVVRQERGYVICPTHPRHKQ 104
Cdd:PRK00831    2 KVRNSLKSlknRHRDCQVVRRKGRVYVINKKNPRFKA 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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