|
Name |
Accession |
Description |
Interval |
E-value |
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
145-562 |
0e+00 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 530.32 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 145 LGLDLSGGTSVVIKADLSE-VTKGVPDAERAAIRSEAMALVLSTLENRINRFGLSEPVIRRQGEDRVYVEIPGLTDRDRV 223
Cdd:TIGR01129 1 LGLDLRGGARVLLEVDMSTaVVLKLSEAEVNAIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRIVVELPGVTDTSRA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 224 HSIVMGRGVLAFHLVDDDATQklldhyrnnpqgtfdaahqlHDLSLVPEHTSvlGVYRKDSYGLDvrDGFLVVKKEPALE 303
Cdd:TIGR01129 81 KDILGGTATLEFRLVDDESTS--------------------PDDALAGNVPA--GSELLDSRSGD--PKYYLLKKSPVLT 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 304 GRHIRDATVSSG-RANEPLVLFDLDHEGARIFSELTTKEIGRRLAIVSDGKIRSAPAIREPITAGSGSISG-FSAEEAQN 381
Cdd:TIGR01129 137 GDHITDATSSVDqRSGQPVVSFSLDSEGARIFGDFTQANIGKRLAIVLDNKVVSAPTIQEAITGGSGQITGnFTAEEAND 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 382 LKTALRSAWLNVALEIENQQVVGASMGEESIRQGTRALVWGLCAVLLFMLVWYQEAGVNACVAQLLNLYIMFGVLSAFNL 461
Cdd:TIGR01129 217 LALVLRSGALPAPLQILEERTIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAFGA 296
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 462 TLTLSSIAGMILTIGMAVDANVVVFERIREELALGKSRGAAVCSGFERAFWAIMDSNVTTFIAALFLSVLGTGPIKGFAY 541
Cdd:TIGR01129 297 TLTLPGIAGLILTIGMAVDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAV 376
|
410 420
....*....|....*....|.
gi 1059479899 542 SLAIGVVSSVFTALFVSRLMF 562
Cdd:TIGR01129 377 TLAIGIIASLFTALVFTRLLL 397
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
140-564 |
8.76e-160 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 463.43 E-value: 8.76e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 140 AQAVKLGLDLSGGTSVVIKADLSEVTKGVPDaERAAIRSEAMALVLSTLENRINRFGLSEPVIRRQGEDRVYVEIPGLTD 219
Cdd:COG0342 28 AKPIKLGLDLQGGVHLLLEVDTDAALDEDGD-GIREVTEEALDQAIEILRNRVNELGVSEPVIQRQGDDRIVVELPGVQD 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 220 RDRVHSIVMGRGVLAFHLVDDDATQKLLdhyrnnpqgtfdaahqlhdlslVPEHTSVLGVYRKDSYgldvrdgflVVKKE 299
Cdd:COG0342 107 PAEAKELLGKTAKLEFRLVDDSADAQAA----------------------VPAGSELLPCRDGQPY---------LLLGP 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 300 PALEGRHIRDATVS-SGRANEPLVLFDLDHEGARIFSELTTKEIGRRLAIVSDGKIRSAPAIREPITAGSGSISG-FSAE 377
Cdd:COG0342 156 VVLTGDDLTDASAGfDQQTGQPVVSFTLDSEGAKKFADATRENVGKPLAIVLDGEVISAPVIQEPITGGSAQITGsFTVE 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 378 EAQNLKTALRSAWLNVALEIENQQVVGASMGEESIRQGTRALVWGLCAVLLFMLVWYQEAGVNACVAQLLNLYIMFGVLS 457
Cdd:COG0342 236 EAQDLALLLRAGALPAPLEIVEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLPGLVANIALALNVVLLLGVLS 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 458 AFNLTLTLSSIAGMILTIGMAVDANVVVFERIREELALGKSRGAAVCSGFERAFWAIMDSNVTTFIAALFLSVLGTGPIK 537
Cdd:COG0342 316 LLGATLTLPGIAGIILTIGMAVDANVLIFERIREELRAGRSLRAAIEAGFKRAFSTILDANVTTLIAAVVLFVLGTGPVK 395
|
410 420
....*....|....*....|....*..
gi 1059479899 538 GFAYSLAIGVVSSVFTALFVSRLMFDY 564
Cdd:COG0342 396 GFAVTLILGILISMFTAVPVTRPLLNL 422
|
|
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
140-577 |
1.09e-155 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 454.30 E-value: 1.09e-155
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 140 AQAVKLGLDLSGGTSVVIKADLSEVTK---------------------------------------------GVPDAERA 174
Cdd:PRK05812 38 AKPMKLGLDLRGGVHFLLEVDMDDALKkrlesladdlrsllrekkiryggveitfrdaedrdkaiallrklsSLTEAELK 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 175 AIRSEAMALVLSTLENRINRFGLSEPVIRRQGEDRVYVEIPGLTDRDRVHSIVMGRGVLAFHLVdddatqklldhyrnnp 254
Cdd:PRK05812 118 EITEEALEQAIEIIRNRVNELGVAEPVIQRQGADRIVVELPGVQDTARAKEILGKTATLEFRLV---------------- 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 255 qgtfdaahqlhdlslvpehtsvlgvyrkdsygldvrdgflvvkkEPALEGRHIRDATVSSGRANEPLVLFDLDHEGARIF 334
Cdd:PRK05812 182 --------------------------------------------PVILTGDDITDASASFDQQGQPVVNITLDSEGAKKF 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 335 SELTTKEIGRRLAIVSDGKIRSAPAIREPITAGSGSISG-FSAEEAQNLKTALRSAWLNVALEIENQQVVGASMGEESIR 413
Cdd:PRK05812 218 ADITKANIGKRMAIVLDGEVISAPVIQSAITGGSAQITGnFTAEEARDLALLLRAGALPAPLEIVEERTIGPSLGADSIR 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 414 QGTRALVWGLCAVLLFMLVWYQEAGVNACVAQLLNLYIMFGVLSAFNLTLTLSSIAGMILTIGMAVDANVVVFERIREEL 493
Cdd:PRK05812 298 AGLIAGLIGLALVLLFMILYYRLFGLIANIALVANLVLILAVLSLLGATLTLPGIAGIVLTIGMAVDANVLIFERIREEL 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 494 ALGKSRGAAVCSGFERAFWAIMDSNVTTFIAALFLSVLGTGPIKGFAYSLAIGVVSSVFTALFVSRLMFDYGTEVLHK-K 572
Cdd:PRK05812 378 REGRSLRSAIEAGFKRAFSTILDSNITTLIAAIILYALGTGPVKGFAVTLGIGILTSMFTAITVTRALVNLLYGRRKRlK 457
|
....*
gi 1059479899 573 TVRIG 577
Cdd:PRK05812 458 KLSIG 462
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
382-558 |
1.99e-14 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 71.87 E-value: 1.99e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 382 LKTALRSawLNVALEIENQQVVGASMGEESIRQGTRALVWGLCAVLLFMLVWYQ-EAGVNACVAQLLNLYIMFGVLSAFN 460
Cdd:pfam02355 2 VEALLKN--VGPDAEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEwRFALGAIIALAHDVIITVGVFSLFG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 461 LTLTLSSIAGMILTIGMAVDANVVVFERIREElaLGKSRGA--------AVCSGFERafwAIMDSnVTTFIAALFLSVLG 532
Cdd:pfam02355 80 IEVDLATVAALLTIIGYSVNDTVVVFDRVREN--LRKKTRAtlneimnlSINQTLTR---TINTS-LTTLLVVVALFVFG 153
|
170 180
....*....|....*....|....*.
gi 1059479899 533 TGPIKGFAYSLAIGVVSSVFTALFVS 558
Cdd:pfam02355 154 GGSLKDFSLALLVGVIVGTYSSIFIA 179
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
425-562 |
1.24e-11 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 67.88 E-value: 1.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 425 AVLLFMLVWYQEAGVNACVAQLLNLYIMFGVLSAFNLTLTLSSIAGMILTIGMAVDANVVVFERIREELALGKsrgaavc 504
Cdd:NF037998 457 AIMIYLLFAYRLLGLFAIIIALTSISLTLYSPTWFGLAIGPESITAIFIAIGLVLESCSLLFEAFKKHLYKNK------- 529
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1059479899 505 SGFERAF--------WAIMDSNVTTFIAALFLSVLGTGPIKGFAYSLAIGVVSSVFTALFVSRLMF 562
Cdd:NF037998 530 RSIEESFkianketiGIIVDALVVLLIPNLSLFWIGSNSIKSFATILLVGVIISLVLVIIVARLMI 595
|
|
| RND_permease_2 |
NF033617 |
multidrug efflux RND transporter permease subunit; |
453-561 |
2.05e-04 |
|
multidrug efflux RND transporter permease subunit;
Pssm-ID: 411236 [Multi-domain] Cd Length: 1009 Bit Score: 44.24 E-value: 2.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 453 FGVLSAFNLTLTLSSIAGMILTIGMAVDANVVVFERIREELALGKSRGAAVCSGF-ERAFWAImdsnVTTF-IAALFLSV 530
Cdd:NF033617 372 FAVMYLFGFSINLLTLMALVLAIGLVVDDAIVVVENIHRHIEEGESPLEAALKGArEIGFTVI----AMTLtLVAVYLPI 447
|
90 100 110
....*....|....*....|....*....|....*.
gi 1059479899 531 LGTGPIKG-----FAYSLAIGVVSSVFTALFVSRLM 561
Cdd:NF033617 448 LFMGGLTGrlfreFAVTLAGAVIISGIVALTLTPMM 483
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
145-562 |
0e+00 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 530.32 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 145 LGLDLSGGTSVVIKADLSE-VTKGVPDAERAAIRSEAMALVLSTLENRINRFGLSEPVIRRQGEDRVYVEIPGLTDRDRV 223
Cdd:TIGR01129 1 LGLDLRGGARVLLEVDMSTaVVLKLSEAEVNAIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRIVVELPGVTDTSRA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 224 HSIVMGRGVLAFHLVDDDATQklldhyrnnpqgtfdaahqlHDLSLVPEHTSvlGVYRKDSYGLDvrDGFLVVKKEPALE 303
Cdd:TIGR01129 81 KDILGGTATLEFRLVDDESTS--------------------PDDALAGNVPA--GSELLDSRSGD--PKYYLLKKSPVLT 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 304 GRHIRDATVSSG-RANEPLVLFDLDHEGARIFSELTTKEIGRRLAIVSDGKIRSAPAIREPITAGSGSISG-FSAEEAQN 381
Cdd:TIGR01129 137 GDHITDATSSVDqRSGQPVVSFSLDSEGARIFGDFTQANIGKRLAIVLDNKVVSAPTIQEAITGGSGQITGnFTAEEAND 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 382 LKTALRSAWLNVALEIENQQVVGASMGEESIRQGTRALVWGLCAVLLFMLVWYQEAGVNACVAQLLNLYIMFGVLSAFNL 461
Cdd:TIGR01129 217 LALVLRSGALPAPLQILEERTIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAFGA 296
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 462 TLTLSSIAGMILTIGMAVDANVVVFERIREELALGKSRGAAVCSGFERAFWAIMDSNVTTFIAALFLSVLGTGPIKGFAY 541
Cdd:TIGR01129 297 TLTLPGIAGLILTIGMAVDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAV 376
|
410 420
....*....|....*....|.
gi 1059479899 542 SLAIGVVSSVFTALFVSRLMF 562
Cdd:TIGR01129 377 TLAIGIIASLFTALVFTRLLL 397
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
140-564 |
8.76e-160 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 463.43 E-value: 8.76e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 140 AQAVKLGLDLSGGTSVVIKADLSEVTKGVPDaERAAIRSEAMALVLSTLENRINRFGLSEPVIRRQGEDRVYVEIPGLTD 219
Cdd:COG0342 28 AKPIKLGLDLQGGVHLLLEVDTDAALDEDGD-GIREVTEEALDQAIEILRNRVNELGVSEPVIQRQGDDRIVVELPGVQD 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 220 RDRVHSIVMGRGVLAFHLVDDDATQKLLdhyrnnpqgtfdaahqlhdlslVPEHTSVLGVYRKDSYgldvrdgflVVKKE 299
Cdd:COG0342 107 PAEAKELLGKTAKLEFRLVDDSADAQAA----------------------VPAGSELLPCRDGQPY---------LLLGP 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 300 PALEGRHIRDATVS-SGRANEPLVLFDLDHEGARIFSELTTKEIGRRLAIVSDGKIRSAPAIREPITAGSGSISG-FSAE 377
Cdd:COG0342 156 VVLTGDDLTDASAGfDQQTGQPVVSFTLDSEGAKKFADATRENVGKPLAIVLDGEVISAPVIQEPITGGSAQITGsFTVE 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 378 EAQNLKTALRSAWLNVALEIENQQVVGASMGEESIRQGTRALVWGLCAVLLFMLVWYQEAGVNACVAQLLNLYIMFGVLS 457
Cdd:COG0342 236 EAQDLALLLRAGALPAPLEIVEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLPGLVANIALALNVVLLLGVLS 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 458 AFNLTLTLSSIAGMILTIGMAVDANVVVFERIREELALGKSRGAAVCSGFERAFWAIMDSNVTTFIAALFLSVLGTGPIK 537
Cdd:COG0342 316 LLGATLTLPGIAGIILTIGMAVDANVLIFERIREELRAGRSLRAAIEAGFKRAFSTILDANVTTLIAAVVLFVLGTGPVK 395
|
410 420
....*....|....*....|....*..
gi 1059479899 538 GFAYSLAIGVVSSVFTALFVSRLMFDY 564
Cdd:COG0342 396 GFAVTLILGILISMFTAVPVTRPLLNL 422
|
|
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
140-577 |
1.09e-155 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 454.30 E-value: 1.09e-155
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 140 AQAVKLGLDLSGGTSVVIKADLSEVTK---------------------------------------------GVPDAERA 174
Cdd:PRK05812 38 AKPMKLGLDLRGGVHFLLEVDMDDALKkrlesladdlrsllrekkiryggveitfrdaedrdkaiallrklsSLTEAELK 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 175 AIRSEAMALVLSTLENRINRFGLSEPVIRRQGEDRVYVEIPGLTDRDRVHSIVMGRGVLAFHLVdddatqklldhyrnnp 254
Cdd:PRK05812 118 EITEEALEQAIEIIRNRVNELGVAEPVIQRQGADRIVVELPGVQDTARAKEILGKTATLEFRLV---------------- 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 255 qgtfdaahqlhdlslvpehtsvlgvyrkdsygldvrdgflvvkkEPALEGRHIRDATVSSGRANEPLVLFDLDHEGARIF 334
Cdd:PRK05812 182 --------------------------------------------PVILTGDDITDASASFDQQGQPVVNITLDSEGAKKF 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 335 SELTTKEIGRRLAIVSDGKIRSAPAIREPITAGSGSISG-FSAEEAQNLKTALRSAWLNVALEIENQQVVGASMGEESIR 413
Cdd:PRK05812 218 ADITKANIGKRMAIVLDGEVISAPVIQSAITGGSAQITGnFTAEEARDLALLLRAGALPAPLEIVEERTIGPSLGADSIR 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 414 QGTRALVWGLCAVLLFMLVWYQEAGVNACVAQLLNLYIMFGVLSAFNLTLTLSSIAGMILTIGMAVDANVVVFERIREEL 493
Cdd:PRK05812 298 AGLIAGLIGLALVLLFMILYYRLFGLIANIALVANLVLILAVLSLLGATLTLPGIAGIVLTIGMAVDANVLIFERIREEL 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 494 ALGKSRGAAVCSGFERAFWAIMDSNVTTFIAALFLSVLGTGPIKGFAYSLAIGVVSSVFTALFVSRLMFDYGTEVLHK-K 572
Cdd:PRK05812 378 REGRSLRSAIEAGFKRAFSTILDSNITTLIAAIILYALGTGPVKGFAVTLGIGILTSMFTAITVTRALVNLLYGRRKRlK 457
|
....*
gi 1059479899 573 TVRIG 577
Cdd:PRK05812 458 KLSIG 462
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
140-579 |
8.41e-116 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 361.09 E-value: 8.41e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 140 AQAVKLGLDLSGGTSVVIKADLSEVTKGvpdAERAAIRSeamalVLSTLENRINRFGLSEPVIRRQGEDRVYVEIPGLTD 219
Cdd:PRK13024 28 TKNINLGLDLQGGFEVLLEVSPADKGKK---ADREALDS-----TVEVLRNRIDGLGVSEPNIQREGNNRIRVELPGVQD 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 220 RDRVHSIVMGRGVLAFHLVDDDATQKlldhyrnnpqgtfdaahqlhdlslvPEHTSVLGVYRKDsygldvrdgfLVVKKE 299
Cdd:PRK13024 100 PERARELLGSTAKLTFRDVTDPPPPG-------------------------VGGPVVGPDEGKD----------TAVLNP 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 300 PALEGRHIRDATVSSG--RANEPLVLFDLDHEGARIFSELTTKEI-----GRRLAIVSDGKIRSAPAIREPITAGSGSIS 372
Cdd:PRK13024 145 VLLSGDDLTDAGAKFDqdQTNRPSVSLKLKSEGAKKWAKVTEKNSkkgppNNRIAIVLDPKVISAPTVNQPINGGSVQIS 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 373 G-FSAEEAQNLKTALRSAWLNVALEIENQQVVGASMGEESIRQGTRALVWGLCAVLLFMLVWYQEAGVNACVAQLLNLYI 451
Cdd:PRK13024 225 GnFTVEEAKDLANLLNAGALPAPLKIIESRSVGPTLGQDAIDAGIIAGIIGFALIFLFMLVYYGLPGLIANIALLLYIFL 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 452 MFGVLSAFNLTLTLSSIAGMILTIGMAVDANVVVFERIREELALGKSRGAAVCSGFERAFWAIMDSNVTTFIAALFLSVL 531
Cdd:PRK13024 305 TLGALSSLGAVLTLPGIAGLVLGIGMAVDANVLIFERIKEELRKGKSLKKAFKKGFKNAFSTILDSNITTLIAAAILFFF 384
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 1059479899 532 GTGPIKGFAYSLAIGVVSSVFTALFVSRLMFDYGTEVLHKKTVRIGWR 579
Cdd:PRK13024 385 GTGPVKGFATTLIIGILASLFTAVFLTRLLLELLVKRGDKKPFLFGVK 432
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
178-562 |
1.60e-84 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 281.22 E-value: 1.60e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 178 SEAMALVLSTLENRINRFGLSEPVIRRQGEDRVYVEIPGLTDRDRVHSIVMGRGVLAFHLVDDD-ATQKLLDhyrNNPqg 256
Cdd:PRK14726 160 SSALTQSIEVVRRRVAELGTTEPLIRRQGDDRIVVQVPGLVDPQRLKNLLNQPAKLSFRLVDSSmPAQEALN---GRP-- 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 257 tfdaahqlhdlslvPEHTSVLgvyrkdsYGLDVRDGFLVVKKEPALEGRHIRDA-TVSSGRANEPLVLFDLDHEGARIFS 335
Cdd:PRK14726 235 --------------PATSEVL-------YSLDDPPVPYLVERRAFVSGENLVDAqPVFDPQTNEPVVTFRLDAEGTQRFA 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 336 ELTTKEIGRRLAIVSDGKIRSAPAIREPITAGSGSISG-FSAEEAQNLKTALRSAWLNVALEIENQQVVGASMGEESIRQ 414
Cdd:PRK14726 294 QATQQNVGKHFAIVLDGQVISAPVIDEAITGGEGRISGnFSEQGANDLAVLLRAGALPATLTVVEERTVGPGLGADSIAA 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 415 GTRALVWGLCAVLLFMLVWYQEAGVNACVAQLLNLYIMFGVLSAFNLTLTLSSIAGMILTIGMAVDANVVVFERIREELA 494
Cdd:PRK14726 374 GLVAGLIAAILVAALMIGFYGFLGVIAVIALIVNVVLIIAVLSLLGATLTLPGIAGIVLTIGMAVDSNVLIYERIREEEK 453
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1059479899 495 LGKSRGAAVCSGFERAFWAIMDSNVTTFIAALFLSVLGTGPIKGFAYSLAIGVVSSVFTALFVSRLMF 562
Cdd:PRK14726 454 TGHSLIQALDRGFSRALATIVDANVTILIAAVILFFLGSGAVRGFAVTLAVGILTTVFTAFTLTRSLV 521
|
|
| secD |
PRK12933 |
protein translocase subunit SecD; |
170-561 |
3.56e-72 |
|
protein translocase subunit SecD;
Pssm-ID: 183831 [Multi-domain] Cd Length: 604 Bit Score: 242.67 E-value: 3.56e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 170 DAERAAIRSEAMALVLSTLENRINRFGLSEPVIRRQGEDRVYVEIPGLTDRDRVHSIVMGRGVLAFHLVDDdatqklldh 249
Cdd:PRK12933 221 QQEKTKFRNLTVQQNLQIMRSRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASLAFYEVKE--------- 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 250 yrnnpQGTFdaahqlhdlslvpeHTSVLgvyrKDSYGLDVRdgflvVKKEPALEGRHIRDATVSSGRANEPLVLFDLDHE 329
Cdd:PRK12933 292 -----SGSV--------------NAKVL----KDKNGRPVY-----VARRPVLGGEHIVDARASLGEMGMAEVNISLDRA 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 330 GARIFSELTTKEIGRRLA-------------------IVSDGKIRSAPAIREPITaGSGSIsgfsaEEAQNLKTALRSAW 390
Cdd:PRK12933 344 GGKKMSDFSRDNIGKPMAtsyseysrdeqgktkqseeVISVATIQSQLGDRFRIT-GAGSY-----QEAQQLALLLRAGS 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 391 LNVALEIENQQVVGASMGEESIRQGTRALVWGLCAVLLFMLVWYQEAGVNACVAQLLNLYIMFGVLSAF-NLTLTLSSIA 469
Cdd:PRK12933 418 LTAPVTIVEERTIGPSLGAENIENGFAALALGMGITLLFMALWYRRLGWVANVALIANMVCLFGLLALIpGAVLTLPGIA 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 470 GMILTIGMAVDANVVVFERIREELALGKSRGAAVCSGFERAFWAIMDSNVTTFIAALFLSVLGTGPIKGFAYSLAIGVVS 549
Cdd:PRK12933 498 GLVLTVGMAVDTNVLIFERIKDKLKEGRSFAQAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLT 577
|
410
....*....|..
gi 1059479899 550 SVFTALFVSRLM 561
Cdd:PRK12933 578 SMFTGIFASRAL 589
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
326-555 |
3.91e-59 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 195.55 E-value: 3.91e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 326 LDHEGARIFSELTtKEIGRRLAIVSDGKIRSAPAIRepitagsgsisgfsaeeaqnlktalrsawlnvaleienqqVVGA 405
Cdd:TIGR00916 1 LDEEGAKIFADFA-ANIGKPAIVLDNAKVISAPVVG----------------------------------------TVGP 39
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 406 SMGEESIRQGTRALVWGLCAVLLFMLVWYQEAGVNACVAQLLN-LYIMFGVLSAFNLTLTLSSIAGMILTIGMAVDANVV 484
Cdd:TIGR00916 40 TLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHdVILILGVLSLFGATLTLPGIAGLLTIIGYSVDDTVV 119
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1059479899 485 VFERIREELAL--GKSRGAAVCSGFERAFWAIMDSNVTTFIAALFLSVLGTGPIKGFAYSLAIGVVSSVFTAL 555
Cdd:TIGR00916 120 IFDRIREELRKykGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSSI 192
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
141-561 |
1.34e-55 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 200.61 E-value: 1.34e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 141 QAVKLGLDLSGGTSVVIKADlsevTKGVPDAERAAirseamalvlSTLENRINRFGLSEPVIRRQGEDRVYVEIPGLTDR 220
Cdd:PRK13023 43 KQVSLGLDLSGGSRLILQVQ----NAGKTDLETTA----------NIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 221 DRVHSIVMGRGVLAFHLVDDdaTQKLLDHYRNNPQGTFDAAHQLHDLSLvpehtsvlgvyrkdsygldvrdGFLVvKKEP 300
Cdd:PRK13023 109 QLLKDILTIRGNLSFRAMDD--TMSPDDAIRGTPPADSEIVYSFDDPPV----------------------GYLL-KKTP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 301 ALEGRHIRDATVS-SGRANEPLVLFDLDHEGARIFSELTTKEIGRRLAIVSDGKIRSAPAIREPITAGSGSISG-FSAEE 378
Cdd:PRK13023 164 ILTGHDITDAKASiSADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGaFDLQA 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 379 AQNLKTALRSAWLNVALEIENQQVVGASMGEESIRQGTRALVWGLCAVLLFMLVWYQEAGVNACVAQLLNLYIMFGVLSA 458
Cdd:PRK13023 244 ANNMAVVLRSGALPQAVTVLEERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSL 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 459 FNLTLTLSSIAGMILTIGMAVDANVVVFERIREELALGKSRGAAVCSGFERAFWAIMDSNVTTFIAALFLSVLGTGPIKG 538
Cdd:PRK13023 324 IGASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHG 403
|
410 420
....*....|....*....|...
gi 1059479899 539 FAYSLAIGVVSSVFTALFVSRLM 561
Cdd:PRK13023 404 FALTVAIGIGTTLFTTLTFTRLL 426
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
343-562 |
4.92e-52 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 192.77 E-value: 4.92e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 343 GRRLAIVSDGKIRSAPAIREPITaGSGSISG-FSAEEAQNLKTALRSAWLNVALEIENQQVVGASMGEESIRQGTRALVW 421
Cdd:PRK12911 839 GWRMAVVLDGYVVSDPVLNVPLK-DHASVSGkFSHREVHRLATDLKSGAMSFVPEVLSEEVISPELGKSQRTQGIISVCL 917
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 422 GLCAVLLFMLVWYQEAGVNACVAQLLNLYIMFGVLSAFNLTLTLSSIAGMILTIGMAVDANVVVFERIREELALGKSRGA 501
Cdd:PRK12911 918 GLAVLIVLMSVYYRFGGVIASGAVLLNLLLIWAALQYLDAPLTLSGLAGIVLAMGMAVDANVLVFERIREEYLLSRSLSE 997
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1059479899 502 AVCSGFERAFWAIMDSNVTTFIAALFLSVLGTGPIKGFAYSLAIGVVSSVFTALFVSRLMF 562
Cdd:PRK12911 998 SVEAGYKKAFSAIFDSNLTTILASALLLMLDTGPIKGFALTLIIGIFSSMFTALFMTKFFF 1058
|
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
146-552 |
1.25e-32 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 129.99 E-value: 1.25e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 146 GLDLSGGTSVVIKADlSEVTKgvpdaeraairsEAMALVLSTLENRINRFGLSEPVIRRQGEDRVYVEIPGlTDRDRVHS 225
Cdd:PRK08343 43 GLDLSGGSWIQLKLE-GPVTQ------------ETMDLVVEILESRLNALGLKDIKVYPVGDQYIVVEVPG-VDADTAKE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 226 IVmgrgvlafhlvdddatqklldhyrnNPQGTFDAAHQlhdlslVPEHTSVLGVYRKDsygldvrdgflVVKKEPALEGR 305
Cdd:PRK08343 109 II-------------------------EKQGVFEARIQ------TPGNNNETVLTGDD-----------IESVGSPSQDP 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 306 hirdatvssgRANEPLVLFDLDHEGARIFSEL------TTKEIGRRLAIVSDGKIRSAPAIREPITAG----------SG 369
Cdd:PRK08343 147 ----------SGGAWGVPFTLSEDGAEKFAEVakgkgaTDDPSGHPLDMYLDGELIYAAPLSPDLASGlasgpvvitvGS 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 370 SISGFSA-EEAQNLKTALRSAWLNVALEIENQQVVGASMGEESIRQgtrALVWGLCAVLLFMLV---WYQEAGVNACVA- 444
Cdd:PRK08343 217 TGTTEEAkEEAKELYIHLRSGALPVKLDIEGSGSVSPSLGEQFKKG---SLIAGLLALLAVALVvflRYREPRIALPMVi 293
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 445 -QLLNLYIMFGVLSAFNLTLTLSSIAGMILTIGMAVDANVVVFErirEELALGKSRGAAVC-SGFERAFWAIMDSNVTTF 522
Cdd:PRK08343 294 tSLSEVIIILGFAALIGWQLDLASIAGIIAVIGTGVDDLIIITD---EVLHEGKVPSRKVFlSRIKRAFFIIFAAAATTI 370
|
410 420 430
....*....|....*....|....*....|
gi 1059479899 523 IAALFLSVLGTGPIKGFAYSLAIGVVSSVF 552
Cdd:PRK08343 371 AAMSPLAVMGLGDLKGFAITTILGVLIGVL 400
|
|
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
369-554 |
1.22e-22 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 98.20 E-value: 1.22e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 369 GSISGFSAEEAQNLKTALRSAWLNValEIENQQVVGASMGEESIRQGTRALVWGLCAVLLFMLVWYQ-EAGVNACVAQLL 447
Cdd:COG0341 91 PPLDGESAEEVEKVRAALKEAFGDV--EIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEwRFAVGAVVALLH 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 448 NLYIMFGVLSAFNLTLTLSSIAGmILTI-GMAVDANVVVFERIREELALGKSRG------AAVCSGFERAfwaIMDSnVT 520
Cdd:COG0341 169 DVLITLGIFSLFGLEFDLTFIAA-LLTIiGYSLNDTVVVFDRIRENLRKYRKMTlaeiinLSINQTLSRT---INTS-LT 243
|
170 180 190
....*....|....*....|....*....|....*...
gi 1059479899 521 TFIAALFLSVLGTGPIKGFAYSLAIGVV----SSVFTA 554
Cdd:COG0341 244 TLLVVLALLFFGGETLRDFALALLIGIIvgtySSIFIA 281
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
370-558 |
5.90e-17 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 80.78 E-value: 5.90e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 370 SISGFSAEEAQNLKTALRSAWLNV--ALEIENQQVVGASMGEESIRQGTRALVWGLCAVLLFMLVWYQ-EAGVNACVAQL 446
Cdd:TIGR00966 53 RIPTLDTEQSEELREALEEALKNVdpDAEIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEwRFALGAIVALV 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 447 LNLYIMFGVLSAFNLTLTLSSIAGMILTIGMAVDANVVVFERIREELALGKSRGA------AVCSGFERafwAIMDSnVT 520
Cdd:TIGR00966 133 HDVIITVGVYSLFGIEVNLTTVAALLTIIGYSINDTVVVFDRIRENLRKYTRKTFtevinlSINQTLSR---TINTS-LT 208
|
170 180 190
....*....|....*....|....*....|....*...
gi 1059479899 521 TFIAALFLSVLGTGPIKGFAYSLAIGVVSSVFTALFVS 558
Cdd:TIGR00966 209 TLLAVLALYVFGGGVIKDFSLALLVGVIVGTYSSIFIA 246
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
396-576 |
2.64e-15 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 79.12 E-value: 2.64e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 396 EIENQQVVGASMGEESIRQGTRALVWGLCAVLLFMLV---WYqeAGVNACVAQLLNLYIMFGVLSAFNLTLTLSSIAGMI 472
Cdd:PRK13024 560 TIPSSETVGPTVGKELARNAIIAVLIALIGILLYILIrfeWT--FSLGAILALLHDVLIVIGFFSLFRLEVDLTFIAAIL 637
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 473 LTIGMAVDANVVVFERIREELALGKSR------GAAVCSGFERafwaIMDSNVTTFIAALFLSVLGTGPIKGFAYSLAIG 546
Cdd:PRK13024 638 TIIGYSINDTVVVFDRIRENLRLYKKKdlreivNKSINQTLSR----TINTSLTTLLVLLALLIFGGSSLRNFSLALLVG 713
|
170 180 190
....*....|....*....|....*....|.
gi 1059479899 547 VVSSVFTALFV-SRLMFDYGTEVLHKKTVRI 576
Cdd:PRK13024 714 LIVGTYSSIFIaAPLWLDLEKRRLKKKKKRK 744
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
382-558 |
1.99e-14 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 71.87 E-value: 1.99e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 382 LKTALRSawLNVALEIENQQVVGASMGEESIRQGTRALVWGLCAVLLFMLVWYQ-EAGVNACVAQLLNLYIMFGVLSAFN 460
Cdd:pfam02355 2 VEALLKN--VGPDAEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEwRFALGAIIALAHDVIITVGVFSLFG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 461 LTLTLSSIAGMILTIGMAVDANVVVFERIREElaLGKSRGA--------AVCSGFERafwAIMDSnVTTFIAALFLSVLG 532
Cdd:pfam02355 80 IEVDLATVAALLTIIGYSVNDTVVVFDRVREN--LRKKTRAtlneimnlSINQTLTR---TINTS-LTTLLVVVALFVFG 153
|
170 180
....*....|....*....|....*.
gi 1059479899 533 TGPIKGFAYSLAIGVVSSVFTALFVS 558
Cdd:pfam02355 154 GGSLKDFSLALLVGVIVGTYSSIFIA 179
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
402-557 |
2.47e-13 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 72.97 E-value: 2.47e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 402 VVGASMGEESIRQGTRALVWGLCAVLLFMLVWYQE--AGVNACVAQLLNLYIMFGVLSAFNLTLTLSSIAGMILTIGMAV 479
Cdd:COG1033 594 VLFAAINESVIESQIRSLLLALLLIFLLLLLAFRSlrLGLISLIPNLLPILLTFGLMGLLGIPLNIATAVVASIALGIGV 673
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 480 DANVVVFERIREELALGKSRGAAVCSGFERAFWAIMDSNVTTFI--AALFLSVLgtGPIKGFAYSLAIGVVSSVFTALFV 557
Cdd:COG1033 674 DYTIHFLSRYREERRKGGDLEEAIRRALRTTGKAILFTSLTLAAgfGVLLFSSF--PPLADFGLLLALGLLVALLAALLL 751
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
425-562 |
1.24e-11 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 67.88 E-value: 1.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 425 AVLLFMLVWYQEAGVNACVAQLLNLYIMFGVLSAFNLTLTLSSIAGMILTIGMAVDANVVVFERIREELALGKsrgaavc 504
Cdd:NF037998 457 AIMIYLLFAYRLLGLFAIIIALTSISLTLYSPTWFGLAIGPESITAIFIAIGLVLESCSLLFEAFKKHLYKNK------- 529
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1059479899 505 SGFERAF--------WAIMDSNVTTFIAALFLSVLGTGPIKGFAYSLAIGVVSSVFTALFVSRLMF 562
Cdd:NF037998 530 RSIEESFkianketiGIIVDALVVLLIPNLSLFWIGSNSIKSFATILLVGVIISLVLVIIVARLMI 595
|
|
| secF |
PRK13021 |
preprotein translocase subunit SecF; Reviewed |
389-557 |
1.58e-11 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 237274 [Multi-domain] Cd Length: 297 Bit Score: 65.26 E-value: 1.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 389 AWLNVALEIENQQVVGASMGEESIRQGTRALVWGLCAVLLFMLV---WYQEAGvnACVAQLLNLYIMFGVLSAFNLTLTL 465
Cdd:PRK13021 102 APLGTEVQVLNSSIVGPQVGQELAEQGGLALLVAMLCILGYLSYrfeWRLASG--ALFALVHDVIFVLAFFALTQMEFNL 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 466 SSIAGMILTIGMAVDANVVVFERIRE------ELALGKSRGAAVCSGFERAfwaiMDSNVTTFIAALFLSVLGTGPIKGF 539
Cdd:PRK13021 180 TVLAAVLAILGYSLNDSIIIADRIRElliakpKLAIQEINNQAIVATFSRT----MVTSGTTLMTVGALWIMGGGPLEGF 255
|
170
....*....|....*...
gi 1059479899 540 AYSLAIGVVSSVFTALFV 557
Cdd:PRK13021 256 SIAMFIGILTGTFSSISV 273
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
451-557 |
9.35e-11 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 64.88 E-value: 9.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 451 IMFGVLSAFNLTLTLSSIAGMILTIGMAVDANVVVFERIREELALGKSRGAAVCSGFERAFWAIMDSNVTTFIAalFLSV 530
Cdd:COG1033 258 WTLGLMGLLGIPLSPLTILVPPLLLAIGIDYGIHLLNRYREERRKGLDKREALREALRKLGPPVLLTSLTTAIG--FLSL 335
|
90 100
....*....|....*....|....*....
gi 1059479899 531 LGTG--PIKGFAYSLAIGVVSSVFTALFV 557
Cdd:COG1033 336 LFSDipPIRDFGIVAAIGVLLAFLTSLTL 364
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
401-558 |
1.39e-10 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 64.25 E-value: 1.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 401 QVVGASMGEESIRQGTRALVWGLCAVllFMLVWYQ---EAGVNACVAQLLNLYIMFGVLSAFNLTLTLSSIAGMILTIGM 477
Cdd:PRK13023 566 DVVGPTVSEQLSRAGVLAVILSLIGI--FIYVWFRfrwQLALGAVLSTLHDVVILSGMFIVFRMEFNLWSVAAILTIIGY 643
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 478 AVDANVVVFERIREELALGKSR--GAAVCSGFERAFWAIMDSNVTTFIAALFLSVLGTGPIKGFAYSLAIGVVSSVFTAL 555
Cdd:PRK13023 644 SLNDTVVIYDRVRENLRRYKSAplPAIIDASINQTLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSI 723
|
...
gi 1059479899 556 FVS 558
Cdd:PRK13023 724 FIA 726
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
375-558 |
1.59e-09 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 60.89 E-value: 1.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 375 SAEEAQNLKTALRSAWLNVALEIENQQVVGASMGEESIRQGTRALVWGLCAVLLFmlVWYQ---EAGVNACVAQLLNLYI 451
Cdd:PRK14726 634 GGENAEQSAVTLVRGELEDDYDFRRVEVVGPAVSGELTMAATLGVLAALAAILIY--IWIRfewQFAVGAIIATLHDVIL 711
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 452 MFGVLSAFNLTLTLSSIAGMILTIGMAVDANVVVFERIREELA------LGKSRGAAVCSGFERafwAIMDSnVTTFIAA 525
Cdd:PRK14726 712 TLGLFVLTGIEFNLTSIAAILTIVGYSLNDTVVVYDRVRENLRrykkmpLPILIDASINQTLSR---TVLTS-ATTLLAL 787
|
170 180 190
....*....|....*....|....*....|...
gi 1059479899 526 LFLSVLGTGPIKGFAYSLAIGVVSSVFTALFVS 558
Cdd:PRK14726 788 LALYLFGGEVIRSFTFAMLFGVAVGTFSSIYIA 820
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
400-555 |
2.84e-07 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 53.62 E-value: 2.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 400 QQVVGASMGEESIRQGTRALVWGLCAVLLFMLVWYQE---AGVNACVAqLLNLYIMFGVLSAFNLTLTLSSIAGMILT-- 474
Cdd:COG2409 156 PAALAADLNEAFEEDLGRAELITLPVALVVLLLVFRSlvaALLPLLTA-GLAVGVALGLLALLAAFTDVSSFAPNLLTml 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 475 -IGMAVDANVVVFERIREELALGKSRGAAVCSGFERAFWAIMDSNVTTFIAALFLSVLGTGPIKGFAYSLAIGVVSSVFT 553
Cdd:COG2409 235 gLGVGIDYALFLVSRYREELRAGEDREEAVARAVATAGRAVLFSGLTVAIALLGLLLAGLPFLRSMGPAAAIGVAVAVLA 314
|
..
gi 1059479899 554 AL 555
Cdd:COG2409 315 AL 316
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
403-557 |
6.30e-07 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 52.53 E-value: 6.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 403 VGASMGEesirqgTRALVWGLCAVLLFMLVWYQEAGVNACVAQLLNLYIMFGVLSAFNLTLTLSSIAGMILTIGMAVDAN 482
Cdd:TIGR00921 191 FGKDMGT------TMAISGILVVLVLLLDFKRWWRPLLPLVIILFGVAWVLGIMGWLGIPLYATTLLAVPMLIGVGIDYG 264
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1059479899 483 VVVFERIREELALGKSRGAAVCSGFERAFWAIMDSNVTTFI--AALFLSVLGTgpIKGFAYSLAIGVVSSVFTALFV 557
Cdd:TIGR00921 265 IQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIALLTTSAgfAALALSEFPM--VSEFGLGLVAGLITAYLLTLLV 339
|
|
| AcrB |
COG0841 |
Multidrug efflux pump subunit AcrB [Defense mechanisms]; |
451-558 |
8.44e-07 |
|
Multidrug efflux pump subunit AcrB [Defense mechanisms];
Pssm-ID: 440603 [Multi-domain] Cd Length: 1015 Bit Score: 52.03 E-value: 8.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 451 IMFGVLSAFNLTLTLSSIAGMILTIGMAVDANVVVFE---RIREElalGKSRGAAVCSGFERAFWAIMDSNVTT---FIA 524
Cdd:COG0841 371 GTFAVMYLLGFSLNILTLFALVLAIGIVVDDAIVVVEnieRHMEE---GLSPLEAAIKGAREVAGAVIASTLTLvavFLP 447
|
90 100 110
....*....|....*....|....*....|....*
gi 1059479899 525 ALFLSVLgTGPI-KGFAYSLAIGVVSSVFTALFVS 558
Cdd:COG0841 448 LAFMGGI-TGQLfRQFALTVAIALLISLFVALTLT 481
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
393-557 |
1.31e-05 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 48.29 E-value: 1.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 393 VALEIENQQVVGASMGEESIRQGTRALVWGLCAVLLFMLVWYQE--AGVNACVAQLLNLYIMFGVLSAFNLTLTLSSIAG 470
Cdd:TIGR00921 547 VKVGVTGLPVAFAEMHELVNEGMRRMTIAGAILVLMILLAVFRNpiKAVFPLIAIGSGILWAIGLMGLRGIPSFLAMATT 626
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 471 MILTIGMAVDANVVVFERIREELAlGKSRGAAVCSGFERAFWAIMDSNVTTFIAALFLSVLGTGPIKGFAYSLAIGVVSS 550
Cdd:TIGR00921 627 ISIILGLGMDYSIHLAERYFEERK-EHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLLSHFPIMRNFGLVQGIGVLSS 705
|
....*..
gi 1059479899 551 VFTALFV 557
Cdd:TIGR00921 706 LTAALVV 712
|
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
402-555 |
1.75e-05 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 46.90 E-value: 1.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 402 VVGASMGEESIRQGTRALVWGLCAVLLFMLVWYQeagvNACVAQLLNLYIMFGVLSAFNLTLTLSSIAGM---------- 471
Cdd:pfam03176 131 ATVADLRDAGDRDLGLIEAVTLVVIFIILLIVYR----SVVAALLPLLTVGLSLGAAQGLVAILAHILGIglstfalnll 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 472 -ILTIGMAVDANVVVFERIREELALGKSRGAAVCSGFERAFWAIMDSNVTTFIAALFLSVLGTGPIKGFAYSLAIGVVSS 550
Cdd:pfam03176 207 vVLLIAVGTDYALFLVSRYREELRAGEDREEAVIRAVRGTGKVVTAAGLTVAIAMLALSFARLPVFAQVGPTIAIGVLVD 286
|
....*
gi 1059479899 551 VFTAL 555
Cdd:pfam03176 287 VLAAL 291
|
|
| ACR_tran |
pfam00873 |
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ... |
409-555 |
6.97e-05 |
|
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.
Pssm-ID: 395701 [Multi-domain] Cd Length: 1021 Bit Score: 46.13 E-value: 6.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 409 EESIRQGTRALVWGLCAVLLFMLVWYQE--AGVNACVAQLLNLYIMFGVLSAFNLTLTLSSIAGMILTIGMAVDANVVVF 486
Cdd:pfam00873 327 RASIEEVVKTLLEAIVLVILVMFLFLQNwrATLIPAIAIPLSLLGTFAVMKAFGFSINTLTLGGLVLAIGLVVDDAIVVV 406
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1059479899 487 ERIREELAL-GKSRGAAV---CSGFERAFWAIMDSNVTTFIAALFLSVLgTGPI-KGFAYSLAIGVVSSVFTAL 555
Cdd:pfam00873 407 ENIERVLEEnGLKPLEAAyksMGEIGGALVAIALVLSAVFLPILFLGGL-TGRIfRQFAITIVLAILLSVLVAL 479
|
|
| RND_permease_2 |
NF033617 |
multidrug efflux RND transporter permease subunit; |
453-561 |
2.05e-04 |
|
multidrug efflux RND transporter permease subunit;
Pssm-ID: 411236 [Multi-domain] Cd Length: 1009 Bit Score: 44.24 E-value: 2.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 453 FGVLSAFNLTLTLSSIAGMILTIGMAVDANVVVFERIREELALGKSRGAAVCSGF-ERAFWAImdsnVTTF-IAALFLSV 530
Cdd:NF033617 372 FAVMYLFGFSINLLTLMALVLAIGLVVDDAIVVVENIHRHIEEGESPLEAALKGArEIGFTVI----AMTLtLVAVYLPI 447
|
90 100 110
....*....|....*....|....*....|....*.
gi 1059479899 531 LGTGPIKG-----FAYSLAIGVVSSVFTALFVSRLM 561
Cdd:NF033617 448 LFMGGLTGrlfreFAVTLAGAVIISGIVALTLTPMM 483
|
|
| 2A0602 |
TIGR00915 |
The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins ... |
409-555 |
2.20e-04 |
|
The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 273335 [Multi-domain] Cd Length: 1044 Bit Score: 44.33 E-value: 2.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 409 EESIRQGTRALVWGLCAVLLFMLVWYQE--AGVNACVAQLLNLYIMFGVLSAFNLTLTLSSIAGMILTIGMAVDANVVVF 486
Cdd:TIGR00915 334 EASIEEVVHTLIEAIVLVFLVMYLFLQNfrATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFAMVLAIGLLVDDAIVVV 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 487 ERI----REE---------LALGKSRGAAVCSGferafWAIMdsnvTTFIAALFLSVlGTGPI-KGFAYSLAIGVVSSVF 552
Cdd:TIGR00915 414 ENVervmAEEglppkeatrKSMGQIQGALVGIA-----MVLS----AVFVPMAFFGG-STGAIyRQFSITIVSAMALSVL 483
|
...
gi 1059479899 553 TAL 555
Cdd:TIGR00915 484 VAL 486
|
|
| PRK09579 |
PRK09579 |
multidrug efflux RND transporter permease subunit; |
452-561 |
6.67e-04 |
|
multidrug efflux RND transporter permease subunit;
Pssm-ID: 169983 [Multi-domain] Cd Length: 1017 Bit Score: 42.90 E-value: 6.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 452 MFGVL---SAFNLTLTLSSIAGMILTIGMAVDANVVVFERIREELALGKSRGAAVCSGFERAFWAIMDSNVTtfIAAL-- 526
Cdd:PRK09579 369 MIGVLffmQMMGYSINLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKSPFDAALEGAREIAMPVVSMTIT--LAAVya 446
|
90 100 110
....*....|....*....|....*....|....*...
gi 1059479899 527 ---FLSVLGTGPIKGFAYSLAIGVVSSVFTALFVSRLM 561
Cdd:PRK09579 447 pigFLTGLTGALFKEFALTLAGAVIISGIVALTLSPMM 484
|
|
| PRK15127 |
PRK15127 |
multidrug efflux RND transporter permease subunit AcrB; |
411-494 |
2.80e-03 |
|
multidrug efflux RND transporter permease subunit AcrB;
Pssm-ID: 185081 [Multi-domain] Cd Length: 1049 Bit Score: 40.66 E-value: 2.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 411 SIRQGTRALVWGLCAVLLFMLVWYQ--EAGVNACVAQLLNLYIMFGVLSAFNLTLTLSSIAGMILTIGMAVDANVVVFER 488
Cdd:PRK15127 336 SIHEVVKTLVEAIILVFLVMYLFLQnfRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVEN 415
|
....*.
gi 1059479899 489 IREELA 494
Cdd:PRK15127 416 VERVMA 421
|
|
| AcrB |
COG0841 |
Multidrug efflux pump subunit AcrB [Defense mechanisms]; |
452-557 |
3.77e-03 |
|
Multidrug efflux pump subunit AcrB [Defense mechanisms];
Pssm-ID: 440603 [Multi-domain] Cd Length: 1015 Bit Score: 40.47 E-value: 3.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 452 MFGVLSA---FNLTLTLSSIAGMILTIGMAVDANVVVFERIREELALGKSRGAAVC-SGFERaFWAIMDSNVTTFIAALF 527
Cdd:COG0841 889 LIGALLGlllTGTPLNIYSQIGLIMLIGIVVKNAILLVDFANQLREEGMSLREAILeAARLR-LRPILMTSLATILGLLP 967
|
90 100 110
....*....|....*....|....*....|....
gi 1059479899 528 LsVLGTGPIKGFAYSLAIGVV----SSVFTALFV 557
Cdd:COG0841 968 L-ALGTGAGAEFRQPLGIAVIggllFSTLLTLFV 1000
|
|
| HpnN |
TIGR03480 |
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing ... |
392-558 |
4.70e-03 |
|
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Pssm-ID: 274598 [Multi-domain] Cd Length: 862 Bit Score: 39.98 E-value: 4.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 392 NVALEIENQQVVGASMgeesirqgTRALVWGLCAVLLFMLVWYQEAGV--NACVAQLLNLYIMFGVLSAFNLTLTLSSIA 469
Cdd:TIGR03480 256 EVALSDEELATVSEGA--------TVAGLLSFVLVLVLLWLALRSPRLvfAVLVTLIVGLILTAAFATLAVGHLNLISVA 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 470 GMILTIGMAVDANVVVFERIREELALGKSRGAAVCSGFERAFWAIMDSNVTTfiAALFLSVLGTgpikgfAYS----LAI 545
Cdd:TIGR03480 328 FAVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAALLLAALAT--AAGFFAFLPT------DYKgvseLGI 399
|
170
....*....|...
gi 1059479899 546 GVVSSVFTALFVS 558
Cdd:TIGR03480 400 IAGTGMFIALFVT 412
|
|
| ACR_tran |
pfam00873 |
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ... |
407-562 |
5.70e-03 |
|
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.
Pssm-ID: 395701 [Multi-domain] Cd Length: 1021 Bit Score: 39.59 E-value: 5.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 407 MGEESIRQGTRAL-VWGLCAVLLFMLVWYQeagVNACVAQLLnlyIMFGV----------LSAFNLTLTLSSIAGMILTI 475
Cdd:pfam00873 853 QFEQEQLAGNSLPiLIALALLVVFLVLAAL---YESWSDPLS---IMLTVplalvgallaLWLRGLPNSVYAQVGLILLI 926
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1059479899 476 GMAVDANVVVFERIREELAL-GKSRGAAVCSGFERAFWAIMDSNVTTFIAALFLsVLGTGPIKGFAYSLAIGV----VSS 550
Cdd:pfam00873 927 GLAVKNAILMVEFANELREQeGKSLEEAILEACRLRLRPILMTALAAILGVLPL-ALSTGAGSELQQPLGIVVfgglVTS 1005
|
170
....*....|..
gi 1059479899 551 VFTALFVSRLMF 562
Cdd:pfam00873 1006 TVLTLLVVPVFY 1017
|
|
| |
