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Conserved domains on  [gi|1101469641|gb|APB81819|]
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flagellar motor protein MotA [Bacillus amyloliquefaciens]

Protein Classification

flagellar motor stator protein MotA( domain architecture ID 10013003)

motility protein A (MotA) is a flagellar motor stator protein which is energized by a proton (H(+)) motive force

Gene Symbol:  motA
Gene Ontology:  GO:0006935|GO:1902600|GO:0120101
PubMed:  6090403|32931735

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PRK08124 PRK08124
flagellar motor protein MotA; Validated
 1-263 7.59e-171

flagellar motor protein MotA; Validated


:

Pssm-ID: 181238 [Multi-domain]  Cd Length: 263  Bit Score: 472.14  E-value: 7.59e-171
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641   1 MDKTSIIGIILAVIALSVGMVLKGVSLSALANPAAILIILFGTISAVIIAFPGKEIKKVPALFKVLFKENKQLTIAQLIP 80
Cdd:PRK08124    1 MDITTIIGLILGLIAVVVGMVVKGASLAVLLNPAAILIIIVGTIAAVMIAFPMSELKKVPKLFKVLFKEKKDPSKEELIE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641  81 MFSQWAQIARREGLLALEASIEDVDDAFLKNGLSMAVDGQSAEFIRDIMTEEVEAMEDRHQAGAAIFTQAGTYAPTLGVL 160
Cdd:PRK08124   81 QFVEWASESRREGLLALEAQLDEIDDPFLKRGLKMVIDGQSPEFIRDVLEEEIEAMEERHAAGAAIFTQAGTYAPTLGVL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641 161 GAVIGLIAALSNMNNTEALGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKQEVKLREIMIEGVLSVLEGQAPKVIEQ 240
Cdd:PRK08124  161 GAVIGLIAALGNLSDIEKLGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKEEIELKYIIIEGVLAIQEGNAPRVIEE 240

                         250       260
                  ....*....|....*....|...
gi 1101469641 241 KLLMYLPANERAKVAEQEGEANN 263
Cdd:PRK08124  241 KLLGYLSPKERKKLEEGAEKNAE 263
 
Name Accession Description Interval E-value
PRK08124 PRK08124
flagellar motor protein MotA; Validated
 1-263 7.59e-171

flagellar motor protein MotA; Validated


Pssm-ID: 181238 [Multi-domain]  Cd Length: 263  Bit Score: 472.14  E-value: 7.59e-171
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641   1 MDKTSIIGIILAVIALSVGMVLKGVSLSALANPAAILIILFGTISAVIIAFPGKEIKKVPALFKVLFKENKQLTIAQLIP 80
Cdd:PRK08124    1 MDITTIIGLILGLIAVVVGMVVKGASLAVLLNPAAILIIIVGTIAAVMIAFPMSELKKVPKLFKVLFKEKKDPSKEELIE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641  81 MFSQWAQIARREGLLALEASIEDVDDAFLKNGLSMAVDGQSAEFIRDIMTEEVEAMEDRHQAGAAIFTQAGTYAPTLGVL 160
Cdd:PRK08124   81 QFVEWASESRREGLLALEAQLDEIDDPFLKRGLKMVIDGQSPEFIRDVLEEEIEAMEERHAAGAAIFTQAGTYAPTLGVL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641 161 GAVIGLIAALSNMNNTEALGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKQEVKLREIMIEGVLSVLEGQAPKVIEQ 240
Cdd:PRK08124  161 GAVIGLIAALGNLSDIEKLGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKEEIELKYIIIEGVLAIQEGNAPRVIEE 240

                         250       260
                  ....*....|....*....|...
gi 1101469641 241 KLLMYLPANERAKVAEQEGEANN 263
Cdd:PRK08124  241 KLLGYLSPKERKKLEEGAEKNAE 263
MotA COG1291
Flagellar motor component MotA [Cell motility];
3-261 3.05e-106

Flagellar motor component MotA [Cell motility];


Pssm-ID: 440902 [Multi-domain]  Cd Length: 258  Bit Score: 308.54  E-value: 3.05e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641   3 KTSIIGIILAVIALSVGMVLKGVSLSALANPAAILIILFGTISAVIIAFPGKEIKKVPALFKVLFKENKQLTIaQLIPMF 82
Cdd:COG1291     1 MATIIGLVVGLGAVLGGFLLEGGSLGALIQPPSLLIVFGGTLGAVLISFPLKVLKAALKALKKAFKGKKADYE-ELIELL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641  83 SQWAQIARREGLLALEASIEDVDDAFLKNGLSMAVDGQSAEFIRDIMTEEVEAMEDRHQAGAAIFTQAGTYAPTLGVLGA 162
Cdd:COG1291    80 VELAEKARKEGLLALESDIEEIDDPFLRDGLRLVVDGTDPEEIRELLETEIEAMEERHEAGAKVFEAMGDYAPAFGIIGT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641 163 VIGLIAALSNMNNTEALGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKQEVKLREIMIEGVLSVLEGQAPKVIEQKL 242
Cdd:COG1291   160 VLGLIQMLGNLDDPSALGPGIAVALVTTFYGVLLANLFFLPIANKLKRRSEEEVLLREMIIEGLLAIQAGENPRIIEEKL 239

                         250
                  ....*....|....*....
gi 1101469641 243 LMYLPANERAKVAEQEGEA 261
Cdd:COG1291   240 RSFLPPSERPSFEEEELKG 258
MotA_ExbB pfam01618
MotA/TolQ/ExbB proton channel family; This family groups together integral membrane proteins ...
 100-216 6.54e-34

MotA/TolQ/ExbB proton channel family; This family groups together integral membrane proteins that appear to be involved translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flageller motor that uses a proton gradient to generate rotational motion in the flageller. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.


Pssm-ID: 460268  Cd Length: 120  Bit Score: 119.12  E-value: 6.54e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641 100 SIEDVDDAFLKNGLSMAVDGQSAEFIRDIMTEEVEAMEDRHQAGAAIFTQAGTYAPTLGVLGAVIGLIAALSNMNNTEA- 178
Cdd:pfam01618   1 AANSPEDRFLKKGLQLVVDGTDPEEIRRALEEAIDREEERLERGLSILATIGSLAPLLGLLGTVLGLIHAFQNLGDAGPg 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1101469641 179 ---LGHAISAAFVATLLGIFTGyVLWHPFANKLKRKSKQEV 216
Cdd:pfam01618  81 lsaLAPGIAEALIATAYGLFVA-IPALPFYNKLKRRSEREV 120
 
Name Accession Description Interval E-value
PRK08124 PRK08124
flagellar motor protein MotA; Validated
 1-263 7.59e-171

flagellar motor protein MotA; Validated


Pssm-ID: 181238 [Multi-domain]  Cd Length: 263  Bit Score: 472.14  E-value: 7.59e-171
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641   1 MDKTSIIGIILAVIALSVGMVLKGVSLSALANPAAILIILFGTISAVIIAFPGKEIKKVPALFKVLFKENKQLTIAQLIP 80
Cdd:PRK08124    1 MDITTIIGLILGLIAVVVGMVVKGASLAVLLNPAAILIIIVGTIAAVMIAFPMSELKKVPKLFKVLFKEKKDPSKEELIE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641  81 MFSQWAQIARREGLLALEASIEDVDDAFLKNGLSMAVDGQSAEFIRDIMTEEVEAMEDRHQAGAAIFTQAGTYAPTLGVL 160
Cdd:PRK08124   81 QFVEWASESRREGLLALEAQLDEIDDPFLKRGLKMVIDGQSPEFIRDVLEEEIEAMEERHAAGAAIFTQAGTYAPTLGVL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641 161 GAVIGLIAALSNMNNTEALGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKQEVKLREIMIEGVLSVLEGQAPKVIEQ 240
Cdd:PRK08124  161 GAVIGLIAALGNLSDIEKLGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKEEIELKYIIIEGVLAIQEGNAPRVIEE 240

                         250       260
                  ....*....|....*....|...
gi 1101469641 241 KLLMYLPANERAKVAEQEGEANN 263
Cdd:PRK08124  241 KLLGYLSPKERKKLEEGAEKNAE 263
MotA COG1291
Flagellar motor component MotA [Cell motility];
3-261 3.05e-106

Flagellar motor component MotA [Cell motility];


Pssm-ID: 440902 [Multi-domain]  Cd Length: 258  Bit Score: 308.54  E-value: 3.05e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641   3 KTSIIGIILAVIALSVGMVLKGVSLSALANPAAILIILFGTISAVIIAFPGKEIKKVPALFKVLFKENKQLTIaQLIPMF 82
Cdd:COG1291     1 MATIIGLVVGLGAVLGGFLLEGGSLGALIQPPSLLIVFGGTLGAVLISFPLKVLKAALKALKKAFKGKKADYE-ELIELL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641  83 SQWAQIARREGLLALEASIEDVDDAFLKNGLSMAVDGQSAEFIRDIMTEEVEAMEDRHQAGAAIFTQAGTYAPTLGVLGA 162
Cdd:COG1291    80 VELAEKARKEGLLALESDIEEIDDPFLRDGLRLVVDGTDPEEIRELLETEIEAMEERHEAGAKVFEAMGDYAPAFGIIGT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641 163 VIGLIAALSNMNNTEALGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKQEVKLREIMIEGVLSVLEGQAPKVIEQKL 242
Cdd:COG1291   160 VLGLIQMLGNLDDPSALGPGIAVALVTTFYGVLLANLFFLPIANKLKRRSEEEVLLREMIIEGLLAIQAGENPRIIEEKL 239

                         250
                  ....*....|....*....
gi 1101469641 243 LMYLPANERAKVAEQEGEA 261
Cdd:COG1291   240 RSFLPPSERPSFEEEELKG 258
motC PRK09109
flagellar motor protein; Reviewed
 1-246 1.21e-70

flagellar motor protein; Reviewed


Pssm-ID: 181654 [Multi-domain]  Cd Length: 246  Bit Score: 217.50  E-value: 1.21e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641   1 MDKTSIIGIILAVIALSVGMVLKGVSLSALANPAAILIILFGTISAVIIAFPGKEIKKVPALFKVLFKENKqLTIAQLIP 80
Cdd:PRK09109    1 MDVLSLIGLILAFVAIIGGQVLEGGHLGSLLNGPAFLIVIGGTLGAVLLQTPLAVFKRAFKILRWVFFPPR-SDLEGGID 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641  81 MFSQWAQIARREGLLALEASIEDVDDAFLKNGLSMAVDGQSAEFIRDIMTEEVEAMEDRHQAGAAIFTQAGTYAPTLGVL 160
Cdd:PRK09109   80 RIVEWSNTARKEGLLGLEDVADREPDPFARKGLQLLVDGAEPESIRSVLEVEIDTQEHRDLQAAKVFESMGGYAPTIGII 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641 161 GAVIGLIAALSNMNNTEALGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKQEVKLREIMIEGVLSVLEGQAPKVIEQ 240
Cdd:PRK09109  160 GAVMGLIHVMENLADPSQLGSGIAVAFVATIYGVASANLLFLPVANKLKSIIHRQSRYREMLVEGLVAIAEGENPRSIEL 239


                  ....*.
gi 1101469641 241 KLLMYL 246
Cdd:PRK09109  240 KLQGYL 245
PRK06926 PRK06926
flagellar motor protein MotP; Reviewed
 7-270 6.17e-62

flagellar motor protein MotP; Reviewed


Pssm-ID: 180755 [Multi-domain]  Cd Length: 271  Bit Score: 196.09  E-value: 6.17e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641   7 IGIILAVIALSVG-MVLKGVS-LSALANPAAILIILFGTISAVIIAFPGKEIKKVPALFKVLFkENKQLTIAQLIPMFSQ 84
Cdd:PRK06926   10 VGIFLGITIVVLGvISNSGLSgFLSFIDLTSILIVTGGLCAALFISFSPKDLKLAPRVLKQAF-QSQEDDVEELVQTFVS 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641  85 WAQIARREGLLALEASIEDVDDAFLKNGLSMAVDGQSAEFIRDIMTEEVEAMEDRHQAGAAIFTQAGTYAPTLGVLGAVI 164
Cdd:PRK06926   89 LSEKARREGLLSLEAELEEVKDPFIKKGLLLAIDGWEPETIRDIMMAEIAAMEERHRKGRRIFEKAGEYAPAWGMIGTLV 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641 165 GLIAALSNMNNTEALGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKQEVKLREIMIEGVLSVLEGQAPKVIEQKLLM 244
Cdd:PRK06926  169 GLVLMLKNLNDPSTLGPNMAIALLTTLYGTLLANLVFLPIAAKLEEKTEEEVFVKQVIIEGVIGVQSGQNPRILEEKLSV 248

                         250       260
                  ....*....|....*....|....*.
gi 1101469641 245 YLPANERAKvaeQEGEANNGEKKEEE 270
Cdd:PRK06926  249 FSSKEDWTK---EEEDRKKKEEVHEA 271
PRK08456 PRK08456
flagellar motor protein MotA; Validated
 1-250 1.45e-57

flagellar motor protein MotA; Validated


Pssm-ID: 181434 [Multi-domain]  Cd Length: 257  Bit Score: 184.54  E-value: 1.45e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641   1 MDKTSIIGIILAVIALSVGMVLKGVSLSALANPAAILIILFGTISAVIIAFPGKEIKKVPALFKVLFKE---NKQLTIAQ 77
Cdd:PRK08456    1 MDLSTILGMVLAVASISVGDILEGGNPLHVIHLSSFIIVVPTALFAAMTATHKKYVKAAYKELKIVFKNpgvNLNERIKQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641  78 LIpmfsQWAQIARREGLLALEASIEDVDDAFLKNGLSMAVDGQSAEFIRDIMTEEVEAMEDRHQAGAAIFTQAGTYAPTL 157
Cdd:PRK08456   81 LV----ELATLARKDGVLALEGRVAQIEDEFLKNGLSMLVDGKDLEEIKESMEIQIEEMEEYYHGAAHYWITAGETCPTM 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641 158 GVLGAVIGLIAALSNMNNTEALGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKQEVKLREIMIEGVLSVLEGQAPKV 237
Cdd:PRK08456  157 GLVGAVMGLMLALQKLDNPAEMAAGIAGAFTATVTGIMGSYALFGPWGHKLKAKSKDIIKEKTVILEGILGIAEGANPRD 236

                         250
                  ....*....|...
gi 1101469641 238 IEQKLLMYLPANE 250
Cdd:PRK08456  237 LEEKLLNYLSPGE 249
PRK08990 PRK08990
flagellar motor protein PomA; Reviewed
 1-259 1.23e-43

flagellar motor protein PomA; Reviewed


Pssm-ID: 181604 [Multi-domain]  Cd Length: 254  Bit Score: 148.65  E-value: 1.23e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641   1 MDKTSIIGIILAVIALSVGMVLKGvSLSALANPAAILIILFGTISAVIIAFpgkEIKKVPALFKV-----LFK-ENKQLT 74
Cdd:PRK08990    1 MDLATLIGLIGAFAFVIMAMVLGG-GIGMFVDVPSILIVFGGSLFVVLMKF---NLGQFFGAVKIagkafMFKiDKPEDL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641  75 IAQLIPMfsqwAQIARREGLLALEASieDVDDAFLKNGLSMAVDGQSAEFIRDIMTEEVEAMEDRHQAGAAIFTQAGTYA 154
Cdd:PRK08990   77 IEQIVEM----ADAARKGGFLALEEA--EISNSFMQKGVDLLVDGHDGDVVRAALEKDIALTEERHETGIGIFRAFGDVA 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641 155 PTLGVLGAVIGLIAALSNMNNTEALGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKQEVKLREIMIEGVLSVLEGQA 234
Cdd:PRK08990  151 PAMGMIGTLIGLVAMLSNMDDPKSIGPAMAVALLTTLYGAVLANMVAIPIADKLSLRMGEEMLNRNLIMDAVLAIQDGQN 230

                         250       260
                  ....*....|....*....|....*
gi 1101469641 235 PKVIEQKLLMYLPANERaKVAEQEG 259
Cdd:PRK08990  231 PRVIEGFLKNYLAEKKR-KIDTTDG 254
MotA_ExbB pfam01618
MotA/TolQ/ExbB proton channel family; This family groups together integral membrane proteins ...
 100-216 6.54e-34

MotA/TolQ/ExbB proton channel family; This family groups together integral membrane proteins that appear to be involved translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flageller motor that uses a proton gradient to generate rotational motion in the flageller. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.


Pssm-ID: 460268  Cd Length: 120  Bit Score: 119.12  E-value: 6.54e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641 100 SIEDVDDAFLKNGLSMAVDGQSAEFIRDIMTEEVEAMEDRHQAGAAIFTQAGTYAPTLGVLGAVIGLIAALSNMNNTEA- 178
Cdd:pfam01618   1 AANSPEDRFLKKGLQLVVDGTDPEEIRRALEEAIDREEERLERGLSILATIGSLAPLLGLLGTVLGLIHAFQNLGDAGPg 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1101469641 179 ---LGHAISAAFVATLLGIFTGyVLWHPFANKLKRKSKQEV 216
Cdd:pfam01618  81 lsaLAPGIAEALIATAYGLFVA-IPALPFYNKLKRRSEREV 120
PRK06743 PRK06743
flagellar motor protein MotP; Reviewed
 7-246 3.94e-31

flagellar motor protein MotP; Reviewed


Pssm-ID: 136027  Cd Length: 254  Bit Score: 116.23  E-value: 3.94e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641   7 IGIILAVIALSVGMVLKGVSLSALAN---PAAILIILFGTISAVIIAFPGKEIKK-VPALFKVLFKENKQLTiaQLIPMF 82
Cdd:PRK06743    1 VGIIVGFAIVIAAIMLGGGGIKAFKNfldVSSILIVIGGTTATIVVAYRFGEIKKyTKSIFTVLHRREEDLE--QLTDLF 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641  83 SQWAQIARREGLLALEASIEDVDDAFLKNGLSMAVDGQSAEFIRDIMTEEVEAMEDRHQAGAAIFTQAGTYAPTLGVLGA 162
Cdd:PRK06743   79 VDFSKKSKKHGLLSLEVDGEQVDNPFIQKGIRLMLSGYDEDELKEVLMKDVETEVYELRKGAALLDKIGDFAPAWGMIGT 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641 163 VIGLIAALSNMNNTEALGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKQEVKLREIMIEGVLSVLEGQAPKVIEQKL 242
Cdd:PRK06743  159 LIGLIIMLQNLQDTSQIGTGMAVAMLTTLYGSVLANMIAIPLAEKVYRGIEDLYTEKKFVIEAISELYRGQIPSKLKLKL 238


                  ....
gi 1101469641 243 LMYL 246
Cdd:PRK06743  239 DTYV 242
PRK09110 PRK09110
flagellar motor stator protein MotA;
6-237 1.92e-22

flagellar motor stator protein MotA;


Pssm-ID: 181655 [Multi-domain]  Cd Length: 283  Bit Score: 93.69  E-value: 1.92e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641   6 IIGIIlaVIALSV--GMVLKGVSLSALANPAAILIILFGTISAVIIAFPGKEIKKVPALFKVLFK---ENKQLTIAQLIP 80
Cdd:PRK09110    4 IIGYI--VVLGSVfgGYLLAGGHLGALIQPAELLIIGGAALGAFIVGNPGKAIKATLKALPKLFKgpkYKKADYMDLLAL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641  81 MFSqWAQIARREGLLALEASIEDVDD-----------------AFLKNGLSMAVDGQSAEF-IRDIMTEEVEAMEDRHQA 142
Cdd:PRK09110   82 LYE-LLRKARQEGMMALEAHIENPEEspifakypkilkdhhlvDFICDYLRLMISGNMNPHeIEALMDEEIETHHHEAEV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641 143 GAAIFTQAGTYAPTLGVLGAVIGLIAALSNMNNT-EALGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKQEVKLREI 221
Cdd:PRK09110  161 PAHALQKVADALPAFGIVAAVLGVVKTMGSIDQPpAVLGALIGAALVGTFLGILLAYGFVGPLAARLEQVVEEDTKMYQC 240

                         250
                  ....*....|....*.
gi 1101469641 222 MIEGVLSVLEGQAPKV 237
Cdd:PRK09110  241 IKVTLLASLNGYAPQI 256
PRK12482 PRK12482
flagellar motor stator protein MotA;
6-220 3.19e-14

flagellar motor stator protein MotA;


Pssm-ID: 171532 [Multi-domain]  Cd Length: 287  Bit Score: 70.93  E-value: 3.19e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641   6 IIGIILAVIALSVGMVLKGVSLSALANPAAILIILFGTISAVIIAFPGKEIKKVPALFKVLFKENKQLT--IAQLIPMFS 83
Cdd:PRK12482    4 LFGLLVVMGCVFGGYLMSGGSLSSIWQPGEIIIILGAGIGAMILGNPKSVLKEMWHQIKGVIRRKEYGVefQRQLLLLLY 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641  84 QWAQIARREGLLALEASIEDVDDAFL------------------KNGLSMAVDGQSAEFIRDIMTEEVEAMEDRHQAGAA 145
Cdd:PRK12482   84 ELLEMVQEGGLKRLDQHIEIPEESSLfqkyplilqqkrlitfisDNFRLMAMGKINQHELEGILDQELDAVEEELLQPSR 163

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1101469641 146 IFTQAGTYAPTLGVLGAVIGLIAALSNMNNTEAL-GHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKQEVKLRE 220
Cdd:PRK12482  164 SLQRIAEAMPGFGICAAVLGIIITMQSIDGSIAEiGLKVAAALVGTFLGVFICYCLMDPLANAMEQEIKKELSLLE 239
MotA_N pfam20560
Motility protein A N-terminal; This entry represents the N-terminal domain of Motility protein ...
 6-93 6.30e-05

Motility protein A N-terminal; This entry represents the N-terminal domain of Motility protein A (MotA). MotA is a membrane protein that forms the stator element of the flagellar motor complex together with MotB with 5:2 stoichiometry, which couples ion flow across the cytoplasmic membrane to generate torque, and thus, it is required for rotation of the flagellar motor. This domain contains conserved torque-generating charged residues at the C-terminal and is adjacent pfam01618, which represents MotA TMH3 and TMH4.


Pssm-ID: 466709 [Multi-domain]  Cd Length: 91  Bit Score: 40.84  E-value: 6.30e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1101469641   6 IIGIILAVIALSVGMVLKGVSLSAL-ANPAAILIILFGTISAVIIAFPGKEIKKVPALFKVLFK---ENKQLTIaQLIPM 81
Cdd:pfam20560   1 IIGIVVVLGCVFGGYALAGGHLGVLwQLPFELLIIGGAAIGAFIIANPMKVLKATLKALPKAFKgskYKKADYL-DLLAL 79

                          90
                  ....*....|..
gi 1101469641  82 FSQWAQIARREG 93
Cdd:pfam20560  80 LYELLRKARKEG 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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